Python Model.processの例

コード例 #1

ファイル: single-trial-GPi-ON.py プロジェクト: mtopalid/Topalidou-et-al-2016

seed = random.randint(0,1000)
np.random.seed(seed)
random.seed(seed)
# seed = 448,380,325
model = Model("model-topalidou.json")
task  = Task("tasks/task-topalidou.json")

print("-"*30)
print("Seed:     %d" % seed)
print("Model:    %s" % model.filename)
print("Task:     %s" % task.filename)
print("-"*30)


trial = task[0]
model.process(task, trial, stop=False, debug=False, cortical_activity=True)

cog = model["CTX"]["cog"].history[:3000]
mot = model["CTX"]["mot"].history[:3000]


duration = 3.0
timesteps = np.linspace(0, duration, 3000)
fig = plt.figure(figsize=(9,7), facecolor="w")
ax = plt.subplot(111)
ax.patch.set_facecolor("w")
ax.spines['right'].set_color('none')
ax.spines['top'].set_color('none')
ax.yaxis.set_ticks_position('left')
ax.yaxis.set_tick_params(direction="in")
ax.xaxis.set_ticks_position('bottom')

コード例 #2

ファイル: single-trial-GPi-ON.py プロジェクト: mtopalid/Topalidou-et-al-2016

seed = random.randint(0, 1000)
np.random.seed(seed)
random.seed(seed)
# seed = 448,380,325
model = Model("model-topalidou.json")
task = Task("tasks/task-topalidou.json")

print("-" * 30)
print("Seed:     %d" % seed)
print("Model:    %s" % model.filename)
print("Task:     %s" % task.filename)
print("-" * 30)

trial = task[0]
model.process(task, trial, stop=False, debug=False, cortical_activity=True)

cog = model["CTX"]["cog"].history[:3000]
mot = model["CTX"]["mot"].history[:3000]

duration = 3.0
timesteps = np.linspace(0, duration, 3000)
fig = plt.figure(figsize=(9, 7), facecolor="w")
ax = plt.subplot(111)
ax.patch.set_facecolor("w")
ax.spines['right'].set_color('none')
ax.spines['top'].set_color('none')
ax.yaxis.set_ticks_position('left')
ax.yaxis.set_tick_params(direction="in")
ax.xaxis.set_ticks_position('bottom')
ax.xaxis.set_tick_params(direction="in")

コード例 #3

seed = 749
model = Model("model-topalidou-thomas.json")
task = Task("tasks/task-topalidou.json")

print("-" * 30)
print("Seed:     %d" % seed)
print("Model:    %s" % model.filename)
print("Task:     %s" % task.filename)
print("-" * 30)

model["CTX:cog → STR:cog"].gain = 0
model["CTX:mot → STR:mot"].gain = 0
model["CTX:cog → STR:ass"].gain = 0
model["CTX:mot → STR:ass"].gain = 0
trial = task[0]
model.process(task, trial, stop=False, debug=False)

cog = model["CTX"]["cog"].history[:3000]
mot = model["CTX"]["mot"].history[:3000]

duration = 3.0
timesteps = np.linspace(0, duration, 3000)

fig = plt.figure(figsize=(9, 7), facecolor="w")
ax = plt.subplot(111)
ax.patch.set_facecolor("w")
ax.spines['right'].set_color('none')
ax.spines['top'].set_color('none')
ax.yaxis.set_ticks_position('left')
ax.yaxis.set_tick_params(direction="in")
ax.xaxis.set_ticks_position('bottom')

コード例 #4

ファイル: single-trial-Str-OFF.py プロジェクト: mtopalid/Topalidou-et-al-2016

seed = 749
model = Model("model-topalidou-thomas.json")
task  = Task("tasks/task-topalidou.json")

print("-"*30)
print("Seed:     %d" % seed)
print("Model:    %s" % model.filename)
print("Task:     %s" % task.filename)
print("-"*30)

model["CTX:cog → STR:cog"].gain = 0
model["CTX:mot → STR:mot"].gain = 0
model["CTX:cog → STR:ass"].gain = 0
model["CTX:mot → STR:ass"].gain = 0
trial = task[0]
model.process(task, trial, stop=False, debug=False)


cog = model["CTX"]["cog"].history[:3000]
mot = model["CTX"]["mot"].history[:3000]


duration = 3.0
timesteps = np.linspace(0, duration, 3000)

fig = plt.figure(figsize=(9,7), facecolor="w")
ax = plt.subplot(111)
ax.patch.set_facecolor("w")
ax.spines['right'].set_color('none')
ax.spines['top'].set_color('none')
ax.yaxis.set_ticks_position('left')