def __init__(self, configs):
BaseModel.__init__(self, configs)
self.encoder = TransformerEncoder(configs)
self.pair_scorer = ScoreModule(self.get_pair_embs_size(),
[configs['ffnn_size']] *
configs['ffnn_depth'],
configs['dropout_rate'])
# GENE embeddings (if use_gene_features enabled)
if configs['use_gene_features']:
self.gene_dim = GENE2DIM.get(self.configs['gene_variant'],
GENE_DIM)
self.event2emb = get_event2geneemb(configs['gene_variant'])
for e in self.event2emb:
self.event2emb[e] = self.event2emb[e].to(self.device)
self.defaultgene = nn.Embedding(1, self.gene_dim)
# Initialize embeddings
for name, param in self.named_parameters():
if (not 'transformer'
in name.lower()) and 'embedding' in name.lower():
print('Re-initialize embedding {}'.format(name))
param.data.uniform_(-0.1, 0.1)
# Move model to device
self.to(self.device)
def post(self):
data = request.get_json()
isbn = data['isbn']
name = data['name']
description = data['description']
price = data['price']
writer = data['writer']
handle = data['handle']
password = data['password']
if handle != utils.admin_handle or password != utils.admin_password:
return utils.return_response(message='authentication error')
model = BaseModel(isbn=isbn,
name=name,
description=description,
price=price,
writer=writer)
try:
db.session.add(model)
db.session.commit()
except SQLAlchemyError as e:
current_app.logger.error(e)
db.session.rollback()
return utils.return_response(message='Error in Database')
else:
return utils.return_response(message='Data inserted Ok')
def get_classification_report_for_evaluation(base_model: BaseModel) -> Dict:
y_pred, y_test = base_model.test_model()
report = classification_report(y_test,
y_pred,
target_names=_CLASS_NAMES,
output_dict=True)
return report
def predict_emotion(model: BaseModel, lyrics: str) -> str:
result = model.predict(lyrics)
if result is not None:
encoded_label, probabilities = result
label = label_encoder.inverse_transform(encoded_label)
return label[0]
else:
return 'Prediction did not succeed'
def evaluate_model(base_model: BaseModel) -> None:
y_pred, y_test = base_model.test_model()
print(classification_report(y_test, y_pred, target_names=_CLASS_NAMES))
cm = confusion_matrix(y_test, y_pred)
df_cm = pd.DataFrame(cm, index=_CLASS_NAMES, columns=_CLASS_NAMES)
show_confusion_matrix(df_cm)
def meetings(user_id):
output = dict()
try:
loaded = BaseModel.load_many_by_user(user_id, "Meeting")
output['meetings'] = []
for data in loaded:
output['meetings'].append(data)
if config.is_dev_environment():
print(f"DEBUG: Loading the follow from DB: {data}")
status = 200
if len(output['meetings']) == 0:
status = 204
except Exception as e:
# TODO: Make the Exception handling less broad
output['error'] = f'{e}'
status = 400
return jsonify(output), status
def create_model(opt):
model = BaseModel(opt)
if opt.model == 'Base':
pass
elif opt.model == 'PATN':
model = PATNTransferModel(opt)
elif opt.model == 'CTPS':
model = CTPSModel(opt)
elif opt.model == 'CAN':
model = CANModel(opt)
elif opt.model == 'DCGAN':
model = DCGANModel(opt)
elif opt.model == "AdaIN":
model = AdaIN(opt)
else:
raise ValueError("Model [%s] not recognized." % opt.model)
print("=> model [{}] was created".format(model.name))
return model
def __init__(self, name, tokenizer, optimizer):
BaseModel.__init__(self, name, tokenizer, optimizer)
# Vectorize the data.
self.input_texts = []
self.target_texts = []
self.input_characters = set()
self.target_characters = set()
for ch in self.CHARS_BASIC:
self.input_characters.add(ch)
self.target_characters.add(ch)
lines = data.load_clean_sentences('both')
for line in lines:
input_text = line[1] # Swedish
target_text = line[0] # English
# We use "tab" as the "start sequence" character
# for the targets, and "\n" as "end sequence" character.
target_text = self.CH_START + target_text + self.CH_END
self.input_texts.append(input_text)
self.target_texts.append(target_text)
for char in input_text:
if char not in self.input_characters:
self.input_characters.add(char)
for char in target_text:
if char not in self.target_characters:
self.target_characters.add(char)
self.input_characters = sorted(list(self.input_characters))
self.target_characters = sorted(list(self.target_characters))
self.num_encoder_tokens = len(self.input_characters)
self.num_decoder_tokens = len(self.target_characters)
self.max_encoder_seq_length = max(
[len(txt) for txt in self.input_texts])
self.max_decoder_seq_length = max(
[len(txt) for txt in self.target_texts])
print('Number of samples:', len(self.input_texts))
print('Number of unique input tokens:', self.num_encoder_tokens)
print('Number of unique output tokens:', self.num_decoder_tokens)
print('Max sequence length for inputs:', self.max_encoder_seq_length)
print('Max sequence length for outputs:', self.max_decoder_seq_length)
self.input_token_index = dict([
(char, i) for i, char in enumerate(self.input_characters)
])
self.target_token_index = dict([
(char, i) for i, char in enumerate(self.target_characters)
])
self.encoder_input_data = np.zeros(
(len(self.input_texts), self.max_encoder_seq_length,
self.num_encoder_tokens),
dtype='float32')
self.decoder_input_data = np.zeros(
(len(self.input_texts), self.max_decoder_seq_length,
self.num_decoder_tokens),
dtype='float32')
self.decoder_target_data = np.zeros(
(len(self.input_texts), self.max_decoder_seq_length,
self.num_decoder_tokens),
dtype='float32')
for i, (input_text, target_text) in enumerate(
zip(self.input_texts, self.target_texts)):
for t, char in enumerate(input_text):
self.encoder_input_data[i, t,
self.input_token_index[char]] = 1.
for t, char in enumerate(target_text):
# decoder_target_data is ahead of decoder_input_data by one timestep
self.decoder_input_data[i, t,
self.target_token_index[char]] = 1.
if t > 0:
# decoder_target_data will be ahead by one timestep
# and will not include the start character.
self.decoder_target_data[
i, t - 1, self.target_token_index[char]] = 1.
# Reverse-lookup token index to decode sequences back to
# something readable.
self.reverse_input_char_index = dict(
(i, char) for char, i in self.input_token_index.items())
self.reverse_target_char_index = dict(
(i, char) for char, i in self.target_token_index.items())
def create_model(self, params=None):
"""
Create the input-output model.
"""
self.model = BaseModel(self.p)
def __init__(self,
name,
tokenizer,
optimizer,
include_dropout=False,
latent_dim=256,
reverse_order=False,
bidi=False):
"""
:param reverse_order: If True, reverse the order of input tokens to ease training
"""
BaseModel.__init__(self, name, tokenizer, optimizer)
# Collection all tokens across all input lines
self.include_dropout = include_dropout
self.latent_dim = latent_dim
self.reverse_order = reverse_order
self.bidi = bidi # If true, use a Bidirectional wrapper around the encoder LSTM
self.other_tokens = set() # input
self.eng_tokens = {self.CH_START, self.CH_END} # target
# Collection all tokens across all input lines
for idx, line in enumerate(self.eng_texts):
self.eng_texts[
idx] = self.CH_START + self.eng_texts[idx] + self.CH_END
self.eng_tokenized[idx] = [
self.CH_START
] + self.eng_tokenized[idx] + [self.CH_END]
for token in self.other_tokenized[idx]:
self.other_tokens.add(token)
for token in self.eng_tokenized[idx]:
self.eng_tokens.add(token)
self.other_tokens = sorted(list(self.other_tokens))
self.eng_tokens = sorted(list(self.eng_tokens))
self.num_encoder_tokens = len(self.other_tokens)
self.num_decoder_tokens = len(self.eng_tokens)
self.max_encoder_seq_length = max(
[len(txt) for txt in self.other_tokenized])
self.max_decoder_seq_length = max(
[len(txt) for txt in self.eng_tokenized])
print('Number of samples:', self.num_samples)
print('Number of unique input tokens:', self.num_encoder_tokens)
print('Number of unique output tokens:', self.num_decoder_tokens)
print('Max sequence length for inputs:', self.max_encoder_seq_length)
print('Max sequence length for outputs:', self.max_decoder_seq_length)
self.input_token_index = dict([
(token, i) for i, token in enumerate(self.other_tokens)
])
self.target_token_index = dict([
(token, i) for i, token in enumerate(self.eng_tokens)
])
self.encoder_input_data = numpy.zeros(
(self.num_samples, self.max_encoder_seq_length,
self.num_encoder_tokens),
dtype='uint8')
self.decoder_input_data = numpy.zeros(
(self.num_samples, self.max_decoder_seq_length,
self.num_decoder_tokens),
dtype='uint8')
self.decoder_target_data = numpy.zeros(
(self.num_samples, self.max_decoder_seq_length,
self.num_decoder_tokens),
dtype='uint8')
# Create one-hot encoded values directly
for i, (input_text, target_text) in enumerate(
zip(self.other_tokenized, self.eng_tokenized)):
for t, token in enumerate(input_text):
self.encoder_input_data[i, t,
self.input_token_index[token]] = 1.
if reverse_order:
self.encoder_input_data = numpy.flip(self.encoder_input_data,
1)
for t, token in enumerate(target_text):
# decoder_target_data is ahead of decoder_input_data by one timestep
self.decoder_input_data[i, t,
self.target_token_index[token]] = 1.
if t > 0:
# decoder_target_data will be ahead by one timestep
# and will not include the start character.
self.decoder_target_data[
i, t - 1, self.target_token_index[token]] = 1.
# Reverse-lookup token index to decode sequences back to something readable.
self.reverse_input_token_index = dict(
(i, token) for token, i in self.input_token_index.items())
self.reverse_target_token_index = dict(
(i, token) for token, i in self.target_token_index.items())
def __init__(self):
BaseModel.__init__(self)
self.name = map_collections["scope"]
def validate(self):
BaseModel.validate(self)
self.validate_existance('user_id', User)
#!/usr/bin/python3
from models import storage
from models.base import BaseModel
all_objs = storage.all()
print("-- Reloaded objects --")
for obj_id in all_objs.keys():
obj = all_objs[obj_id]
print(obj)
print("-- Create a new object --")
my_model = BaseModel()
my_model.name = "Holberton"
my_model.my_number = 89
my_model.save()
print(my_model)
parser.add_argument("--epochs", type=int, default=50, help="train epochs")
parser.add_argument("--batch_size", type=int, default=16, help="batch size")
parser.add_argument("--emb_drop_rate", type=float, default=0.2, help="dropout rate for embeddings")
parser.add_argument("--rnn_drop_rate", type=float, default=0.5, help="dropout rate for embeddings")
parser.add_argument("--max_to_keep", type=int, default=1, help="maximum trained model to be saved")
parser.add_argument("--no_imprv_tolerance", type=int, default=None, help="no improvement tolerance")
config = Configurations(parser.parse_args())
# os environment
os.environ['TF_CPP_MIN_LOG_LEVEL'] = "3"
os.environ["CUDA_VISIBLE_DEVICES"] = config.gpu_idx
# if dataset is not prepared, then build it
if not os.path.exists(config.save_path) or not os.listdir(config.save_path):
process_base(config)
print("load dataset...")
train_ratio = int(config.train_ratio) if float(config.train_ratio) > 1.0 else float(config.train_ratio)
dataset = Dataset(config.train_set, config.dev_set, config.test_set, batch_size=config.batch_size,
train_rate=train_ratio, shuffle=True)
print("build model and train...")
model = BaseModel(config)
if config.restore_model:
model.restore_last_session()
if config.train:
model.train(dataset)
model.restore_last_session()
model.evaluate_data(dataset.get_data_batches("test"), name="test")
model.close_session()
def __init__(self, name, tokenizer, optimizer):
BaseModel.__init__(self, name, tokenizer, optimizer)
def __call__(self, hparams, mode, iterator, **kwargs):
BaseModel.__call__(self, hparams, mode, iterator, **kwargs)
return self
def validate(self):
BaseModel.validate(self)
self.validate_existance('movement_id', Movement)
def train(model: BaseModel, config, train_dataset, val_dataset, step=0):
train_iterator = DataIterator(train_dataset,
batch_size=config.batch_size,
num_workers=config.data.num_workers,
sampler=InfiniteRandomSampler(train_dataset))
# Prepare for summary
writer = SummaryWriter(config.log_dir)
config_str = yaml.dump(namedtuple_to_dict(config))
writer.add_text('config', config_str)
train_sampler = SubsetSequentialSampler(train_dataset,
config.summary.train_samples)
val_sampler = SubsetSequentialSampler(val_dataset,
config.summary.val_samples)
train_sample_iterator = DataIterator(train_dataset.for_summary(),
sampler=train_sampler,
num_workers=2)
val_sample_iterator = DataIterator(val_dataset.for_summary(),
sampler=val_sampler,
num_workers=2)
# Training loop
start_time = time.time()
start_step = step
while True:
step += 1
save_summary = step % config.summary_step == 0
d_summary, g_summary, p_summary = None, None, None
if config.mode == MODE_PRED:
if model.lr_sched_p is not None:
model.lr_sched_p.step()
x, y = next(train_iterator)
p_summary = model.optimize_p(x,
y,
step=step,
summarize=save_summary)
else:
if model.lr_sched_d is not None:
model.lr_sched_d.step()
x, y = next(train_iterator)
summarize_d = save_summary and config.d_updates_per_step == 1
d_summary = model.optimize_d(x,
y,
step=step,
summarize=summarize_d)
for i in range(config.d_updates_per_step - 1):
x, y = next(train_iterator)
summarize_d = save_summary and (
i == config.d_updates_per_step - 2)
d_summary = model.optimize_d(x,
y,
step=step,
summarize=summarize_d)
if model.lr_sched_g is not None:
model.lr_sched_g.step()
summarize_g = save_summary and config.g_updates_per_step == 1
g_summary = model.optimize_g(x,
y,
step=step,
summarize=summarize_g)
for i in range(config.g_updates_per_step - 1):
x, y = next(train_iterator)
summarize_g = save_summary and (
i == config.g_updates_per_step - 2)
g_summary = model.optimize_g(x,
y,
step=step,
summarize=summarize_g)
# Print status
elapsed_time = time.time() - start_time
elapsed_step = step - start_step
print('\r[Step %d] %s' %
(step, time.strftime('%H:%M:%S', time.gmtime(elapsed_time))),
end='')
if elapsed_time > elapsed_step:
print(' | %.2f s/it' % (elapsed_time / elapsed_step), end='')
else:
print(' | %.2f it/s' % (elapsed_step / elapsed_time), end='')
if step % config.ckpt_step == 0:
model.save(step)
if save_summary:
# Save summaries from optimization process
for summary in [p_summary, d_summary, g_summary]:
if summary is None:
continue
model.write_summary(writer, summary, step)
# Summarize learning rates and gradients
for component, optimizer in [
('d', model.optim_d),
('g', model.optim_g),
('p', model.optim_p),
]:
if optimizer is None:
continue
for i, group in enumerate(optimizer.param_groups):
writer.add_scalar('lr/%s/%d' % (component, i), group['lr'],
step)
grads = []
for param in group['params']:
if param.grad is not None:
grads.append(param.grad.data.view([-1]))
if grads:
grads = torch.cat(grads, 0)
writer.add_histogram('grad/%s/%d' % (component, i),
grads, step)
# Custom summaries
model.summarize(writer, step, train_sample_iterator,
val_sample_iterator)
def __init__(self):
BaseModel.__init__(self)
self.name = map_collections["rol_relation"]