def gene_fav_save(request, gene_fav_id=0):
name = request.POST.get("genes-name")
gene_list = request.POST.get("genes-list")
gene_list = [x.strip() for x in gene_list.split(' ')]
gene_list = list(set(gene_list))
if gene_fav_id :
try:
gene_fav_model = GeneFavorite.objects.get(id=gene_fav_id)
if gene_fav_model.user == request.user :
gene_fav_model.name = name
gene_fav_model.save()
gene_fav_model.edit_list(gene_list, request.user)
redirect_url = reverse('gene_fav_detail', kwargs={'gene_fav_id':gene_fav_id})
else :
messages.error(request, 'You do not have permission to update this gene favorite list')
redirect_url = reverse('genes')
except ObjectDoesNotExist:
messages.error(request, 'The gene list you want does not exist.')
redirect_url = reverse('genes')
else :
GeneFavorite.create(name=name, gene_list=gene_list, user=request.user)
redirect_url = reverse('genes')
return redirect(redirect_url)
def gene_fav_list(request, workbook_id=0, worksheet_id=0, new_workbook=0):
template = 'genes/genes_list.html'
context = {}
gene_list = GeneFavorite.get_list(request.user)
if len(gene_list) == 0 :
gene_list = None
context['gene_fav_list']=gene_list
if workbook_id != 0 :
try:
workbook_model = Workbook.objects.get(id=workbook_id)
context['workbook'] = workbook_model
worksheet_model = Worksheet.objects.get(id=worksheet_id)
context['worksheet'] = worksheet_model
context['base_url'] = settings.BASE_URL
template = 'genes/genes_select.html'
if not gene_list :
context['genes'] = []
except ObjectDoesNotExist:
messages.error(request, 'The workbook and worksheet you were referencing does not exist.')
return redirect('genes')
elif new_workbook :
context['new_workbook'] = True
if gene_list :
template = 'genes/genes_select.html'
else :
template = 'genes/genes_edit.html'
context['genes'] = []
context['base_url'] = settings.BASE_URL
return render(request, template, context)
def gene_fav_list(request, workbook_id=0, worksheet_id=0, new_workbook=0):
template = 'genes/genes_list.html'
context = {}
gene_list = GeneFavorite.get_list(request.user)
if len(gene_list) == 0 :
gene_list = None
context['gene_fav_list']=gene_list
if workbook_id != 0 :
try:
workbook_model = Workbook.objects.get(id=workbook_id)
context['workbook'] = workbook_model
worksheet_model = Worksheet.objects.get(id=worksheet_id)
context['worksheet'] = worksheet_model
context['base_url'] = settings.BASE_URL
template = 'genes/genes_select.html'
if not gene_list :
context['genes'] = []
except ObjectDoesNotExist:
messages.error(request, 'The workbook and worksheet you were referencing does not exist.')
return redirect('genes')
elif new_workbook :
context['new_workbook'] = True
if gene_list :
template = 'genes/genes_select.html'
else :
template = 'genes/genes_edit.html'
context['genes'] = []
context['base_url'] = settings.BASE_URL
return render(request, template, context)
def gene_fav_save(request, gene_fav_id=0):
name = request.POST.get("genes-name")
gene_list = request.POST.get("genes-list")
gene_list = [x.strip().upper() for x in gene_list.split(' ')]
gene_list = list(set(gene_list))
whitelist = re.compile(WHITELIST_RE, re.UNICODE)
match = whitelist.search(unicode(name))
if match:
# XSS risk, log and fail this cohort save
match = whitelist.findall(unicode(name))
logger.error('[ERROR] While saving a gene list, saw a malformed name: ' + name + ', characters: ' + match.__str__())
messages.error(request, "Your gene list's name contains invalid characters; please choose another name.")
redirect_url = reverse('genes') if not gene_fav_id else reverse('gene_fav_detail', kwargs={'gene_fav_id':gene_fav_id})
return redirect(redirect_url)
if gene_fav_id :
try:
gene_fav_model = GeneFavorite.objects.get(id=gene_fav_id)
if gene_fav_model.user == request.user :
gene_fav_model.name = name
gene_fav_model.save()
gene_fav_model.edit_list(gene_list, request.user)
redirect_url = reverse('gene_fav_detail', kwargs={'gene_fav_id':gene_fav_id})
else :
messages.error(request, 'You do not have permission to update this gene favorite list')
redirect_url = reverse('genes')
except ObjectDoesNotExist:
messages.error(request, 'The gene list you want does not exist.')
redirect_url = reverse('genes')
else :
GeneFavorite.create(name=name, gene_list=gene_list, user=request.user)
redirect_url = reverse('genes')
return redirect(redirect_url)
def gene_fav_save(request, gene_fav_id=0):
name = request.POST.get("genes-name")
gene_list = request.POST.get("genes-list")
gene_list = [x.strip() for x in gene_list.split(' ')]
gene_list = list(set(gene_list))
whitelist = re.compile(WHITELIST_RE, re.UNICODE)
match = whitelist.search(unicode(name))
if match:
# XSS risk, log and fail this cohort save
match = whitelist.findall(unicode(name))
logger.error('[ERROR] While saving a gene list, saw a malformed name: ' + name + ', characters: ' + match.__str__())
messages.error(request, "Your gene list's name contains invalid characters; please choose another name.")
redirect_url = reverse('genes') if not gene_fav_id else reverse('gene_fav_detail', kwargs={'gene_fav_id':gene_fav_id})
return redirect(redirect_url)
if gene_fav_id :
try:
gene_fav_model = GeneFavorite.objects.get(id=gene_fav_id)
if gene_fav_model.user == request.user :
gene_fav_model.name = name
gene_fav_model.save()
gene_fav_model.edit_list(gene_list, request.user)
redirect_url = reverse('gene_fav_detail', kwargs={'gene_fav_id':gene_fav_id})
else :
messages.error(request, 'You do not have permission to update this gene favorite list')
redirect_url = reverse('genes')
except ObjectDoesNotExist:
messages.error(request, 'The gene list you want does not exist.')
redirect_url = reverse('genes')
else :
GeneFavorite.create(name=name, gene_list=gene_list, user=request.user)
redirect_url = reverse('genes')
return redirect(redirect_url)