if --printOnly option is given, no folders will be created, only their names will be printed on the screen
xparams can be given in format name1=value1,name2=value2,...
value can be either a single value, or LIST (MIND (default) STATEMENTS IN LISTS !!! )
"""
opts,args=gnu_getopt(sys.argv[1:],'',['printOnly'])
if len(args)<1:
print usage;
quit();
# print 'Opening chain prototype file '+sys.argv[1]+' ... '
# project_name = args[0];
chain=Chain(args[0]);
# methodID = args[2];
project_name = chain.project;
methodID = chain.runMethod;
printOnly = ('--printOnly','') in opts;
# print 'done'
root= os.getenv('MOLDB_PROJECTS') + '/' + project_name + '/Methods';
# methodID = sys.argv[3] if len(sys.argv)>2 else prototype.runMethod;
d=chain.getMethodsDict();
prototype = d[methodID];
def createFolders_callback(data):
params = dict(data);
root = params.pop('moldb_root');
prototype = params.pop('moldb_prototype');
printOnly = params.pop('moldb_printOnly');
project_name = params.pop('moldb_projectName');
visited={}
m = buildImplementation(params,prototype,visited);
meth = [];
for pid in sorted(visited.keys()):
meth.append(visited[pid]);
folder = root + '/' + m.getRef();
relroot = '$MOLDB_PROJECTS/'+project_name+'/Methods';
relfolder = relroot + '/' + m.getRef();
print folder;
if printOnly: return
# mkdir
mkdir_p(folder);
#chain.implementation
chain = Chain();
chain.fromMethods(meth,m.getHash(),project_name,False);
f=open(folder + '/chain.imp','w');
f.write( chain.toString() );
f.close();
#PARAMETERS
paramStr = 'PROJECT='+project_name+'\n';
paramStr += 'FOLDER='+relfolder+'\n'
paramStr += 'PROTOTYPES=$MOLDB_PROJECTS/'+project_name+'/Prototypes\n';
paramStr += paramsString(params);
f=open(folder+'/PARAMETERS','w');
f.write(paramStr);
f.close();
os.system('chmod +x '+folder+ '/PARAMETERS');
#DEPENDENCIES
depStr = dependenciesString(m.dependencies,relroot);
f=open(folder+'/DEPENDENCIES','w');
f.write(depStr);
f.close();
os.system('chmod +x '+ folder +'/DEPENDENCIES');
#Scripts
strPrm = '#!/bin/bash\n'
strPrm += '# METHOD '+m.name+'\n';
strPrm += '# ID' + str(m.getHash())+'\n';
strPrm += '# --- Dependencies --- \n'
strPrm += '. ./DEPENDENCIES\n'
# strPrm += dependenciesString(m.dependencies,root);
strPrm += '# --- Method Parameters ---\n'
strPrm += '. ./PARAMETERS\n'
# strPrm += 'PROJECT='+root+'\n'
# strPrm += 'FOLDER=' + folder +'\n'
strPrm += paramsString(params);
strPrm += '\n # ---- Script ----\n'
for script in m.scripts:
f=open(folder+'/'+script.name,'w');
f.write(strPrm+script.text);
f.close();
os.system('chmod +x '+folder+'/'+script.name);
opts, args = gnu_getopt(sys.argv[1:], '')
if len(args) < 4:
sys.stderr.write(usage)
quit()
# Project=args[0];
chain_file = args[0]
# methodID=args[2];
rows = args[1].split(',')
cols = args[2].split(',')
fname = args[3]
ch = Chain(chain_file)
Project = ch.project
methodID = ch.runMethod
d = ch.getMethodsDict()
method = d[methodID]
if len(args) >= 5:
parseXparam(args[4], method)
rows_iterators = []
cols_iterators = []
for k in rows:
rows_iterators.append(method.iterators[k])
--printMethod : prints the generated method ( DUBUG ONLY )
--noRoot : print relative paths (w.r.t. Methods folder of the current project )
"""
if __name__ == '__main__':
opts,args=gnu_getopt(sys.argv[1:],'p:',['printMethod','noRefs','addRoot=','--project','noRoot']);
if len(args)<1:
print usage
quit()
ch = Chain(args[0]);
methodID = ch.runMethod;
# methodID = args[1];
methodsDict = ch.getMethodsDict();
# print ch
method = methodsDict[methodID];
if len(args)>1:
parseXparam(args[1],method,ch);
if ('--printMethod','') in opts:
print method
-p, --proc=Npar : number of parallel processes (processors)
Npar scripts will be generated (+1 main script which runs all others)
"""
if __name__ == '__main__':
if len(sys.argv) < 3:
print usage
quit()
opts, args = gnu_getopt(sys.argv[1:], 'o:x:p:', ['xparam=', 'proc='])
# project_name = args[0];
chain_fname = args[0]
chain_name = chain_fname.split('.')[0]
ch = Chain(chain_fname)
methodsDict = ch.getMethodsDict()
project_name = ch.project
methodID = ch.runMethod
# methodID = args[2];
prototype = methodsDict[methodID]
script = args[1]
script_words = script.split()
output = project_name + '_' + chain_name + '_' + script_words[0] + '.sh'
xparam_arg = False
xparam_arg_val = None
def createFolders_callback(data):
params = dict(data)
root = params.pop('moldb_root')
prototype = params.pop('moldb_prototype')
printOnly = params.pop('moldb_printOnly')
project_name = params.pop('moldb_projectName')
visited = {}
m = buildImplementation(params, prototype, visited)
meth = []
for pid in sorted(visited.keys()):
meth.append(visited[pid])
folder = root + '/' + m.getRef()
relroot = '$MOLDB_PROJECTS/' + project_name + '/Methods'
relfolder = relroot + '/' + m.getRef()
print folder
if printOnly: return
# mkdir
mkdir_p(folder)
#chain.implementation
chain = Chain()
chain.fromMethods(meth, m.getHash(), project_name, False)
f = open(folder + '/chain.imp', 'w')
f.write(chain.toString())
f.close()
#PARAMETERS
paramStr = 'PROJECT=' + project_name + '\n'
paramStr += 'FOLDER=' + relfolder + '\n'
paramStr += 'PROTOTYPES=$MOLDB_PROJECTS/' + project_name + '/Prototypes\n'
paramStr += paramsString(params)
f = open(folder + '/PARAMETERS', 'w')
f.write(paramStr)
f.close()
os.system('chmod +x ' + folder + '/PARAMETERS')
#DEPENDENCIES
depStr = dependenciesString(m.dependencies, relroot)
f = open(folder + '/DEPENDENCIES', 'w')
f.write(depStr)
f.close()
os.system('chmod +x ' + folder + '/DEPENDENCIES')
#Scripts
strPrm = '#!/bin/bash\n'
strPrm += '# METHOD ' + m.name + '\n'
strPrm += '# ID' + str(m.getHash()) + '\n'
strPrm += '# --- Dependencies --- \n'
strPrm += '. ./DEPENDENCIES\n'
# strPrm += dependenciesString(m.dependencies,root);
strPrm += '# --- Method Parameters ---\n'
strPrm += '. ./PARAMETERS\n'
# strPrm += 'PROJECT='+root+'\n'
# strPrm += 'FOLDER=' + folder +'\n'
strPrm += paramsString(params)
strPrm += '\n # ---- Script ----\n'
for script in m.scripts:
f = open(folder + '/' + script.name, 'w')
f.write(strPrm + script.text)
f.close()
os.system('chmod +x ' + folder + '/' + script.name)
if --printOnly option is given, no folders will be created, only their names will be printed on the screen
xparams can be given in format name1=value1,name2=value2,...
value can be either a single value, or LIST (MIND (default) STATEMENTS IN LISTS !!! )
"""
opts, args = gnu_getopt(sys.argv[1:], '', ['printOnly'])
if len(args) < 1:
print usage
quit()
# print 'Opening chain prototype file '+sys.argv[1]+' ... '
# project_name = args[0];
chain = Chain(args[0])
# methodID = args[2];
project_name = chain.project
methodID = chain.runMethod
printOnly = ('--printOnly', '') in opts
# print 'done'
root = os.getenv('MOLDB_PROJECTS') + '/' + project_name + '/Methods'
# methodID = sys.argv[3] if len(sys.argv)>2 else prototype.runMethod;
d = chain.getMethodsDict()
prototype = d[methodID]
if len(args) > 1:
