def proxify( reac, reacc, direction, pool, poolc ):
reacc_elm = _moose.element( reacc )
reac_elm = _moose.element( reac )
# Preserve the rates which were set up for the x-compt reacn
#_moose.showfield( reac )
dupname = pool.name + '_xfer_' + _moose.element(poolc).name
#print "#############", pool, dupname, poolc
if _moose.exists( reacc + '/' + dupname ):
duppool = _moose.element( reacc + '/' + dupname )
else:
# This also deals with cases where the duppool is buffered.
duppool = _moose.copy(pool, reacc_elm, dupname )
duppool.diffConst = 0 # diffusion only happens in original compt
removeEnzFromPool( duppool )
disconnectReactant( reac, pool, duppool )
_moose.connect( reac, direction, duppool, 'reac' )
def proxify( reac, reacc, direction, pool, poolc ):
reacc_elm = _moose.element( reacc )
reac_elm = _moose.element( reac )
# Preserve the rates which were set up for the x-compt reacn
#_moose.showfield( reac )
dupname = pool.name + '_xfer_' + _moose.element(poolc).name
#print "#############", pool, dupname, poolc
if _moose.exists( reacc + '/' + dupname ):
duppool = _moose.element( reacc + '/' + dupname )
else:
# This also deals with cases where the duppool is buffered.
duppool = _moose.copy(pool, reacc_elm, dupname )
duppool.diffConst = 0 # diffusion only happens in original compt
removeEnzFromPool( duppool )
disconnectReactant( reac, pool, duppool )
_moose.connect( reac, direction, duppool, 'reac' )
def restoreXreacs( basepath ):
proxyInfo = _moose.wildcardFind( basepath + "/##/#_xfer_#/info" )
for i in proxyInfo:
msgs = i.notes.split( msgSeparator )
oldRates = getOldRates( msgs )
#print( "Deleting {}".format( i.parent.path ) )
#print msgs
_moose.delete( i.parent )
for j in msgs[1:]:
if len( j ) > 0:
args = j.split( ' ' )
assert( len( args ) == 4 )
#_moose.showfield( args[0] )
_moose.connect( args[0], args[1], args[2], args[3] )
#print( "Reconnecting {}".format( args ) )
#_moose.showfield( args[0] )
restoreOldRates( oldRates, msgs )
def restoreXreacs(basepath):
proxyInfo = _moose.wildcardFind(basepath + "/##/#_xfer_#/info")
for i in proxyInfo:
msgs = i.notes.split(msgSeparator)
oldRates = getOldRates(msgs)
#print( "Deleting {}".format( i.parent.path ) )
#print msgs
_moose.delete(i.parent)
for j in msgs[1:]:
if len(j) > 0:
args = j.split(' ')
assert (len(args) == 4)
#_moose.showfield( args[0] )
_moose.connect(args[0], args[1], args[2], args[3])
#print( "Reconnecting {}".format( args ) )
#_moose.showfield( args[0] )
restoreOldRates(oldRates, msgs)
def restoreXreacs( basepath ):
proxyInfo = _moose.wildcardFind( basepath + "/##/#_xfer_#/info" )
for i in proxyInfo:
msgs = i.notes.split( msgSeparator )
oldRates = getOldRates( msgs )
#print( "Deleting {}".format( i.parent.path ) )
#print msgs
_moose.delete( i.parent )
for j in msgs[1:]:
if len( j ) > 0:
args = j.split( ' ' )
assert( len( args ) == 4 )
#_moose.showfield( args[0] )
#check to see if object exist before moose.connect, cases where object is deleted but
#_xref_ annotation info field still holds the reference
if (_moose.exists(args[0]) and _moose.exists(args[2])):
_moose.connect( args[0], args[1], args[2], args[3] )
#print( "Reconnecting {}".format( args ) )
#_moose.showfield( args[0] )
restoreOldRates( oldRates, msgs )
def record(obj, field=None, label=None):
""""""
global _counter
# Checking if object is an iterable like list or a tuple, but not a string.
if hasattr(obj, "__iter__"):
return [record(o, field, label) for o in obj]
if isinstance(obj, str):
obj = _moose.element(obj)
if field is None:
field = _defaultField(obj)
path = _path.format(_counter)
_counter += 1
p = _Plot(path, obj, field, label)
_plots.append(p)
_moose.connect(p, "requestData", obj, "get_" + field)
_moose.useClock(_tick, path, "process")
return p