コード例 #1
0
ファイル: pepFragMain.py プロジェクト: mfitzp/toolz
def mainB():
    import numpy as N
    #    import pylab as P
    import scipy as S
    import sys
    from PyQt4 import QtGui, QtCore
    from mpl_pyqt4_widget import MPL_Widget
    app = QtGui.QApplication(sys.argv)
    w = MPL_Widget(enableAutoScale=False, doublePlot=True, enableEdit=True)
    #seq = 'ANTHRACISAMES'
    seq = 'ANTHRACISSTERNE'
    #X = P.load('amesPredicted.csv', delimiter = ',')
    X = N.loadtxt('sternePredicted.csv', delimiter=',')
    Y = S.rand(len(X))
    Y *= 10
    randInt = []
    for i in xrange(int(0.25 * len(X))):
        ind = N.random.random_integers(len(Y) - 1)
        Y[ind] = N.random.random_integers(10) * 10

    Y /= Y.max()
    Y *= 100
    #    X = N.array(X, dtype = N.float)#conver to array with dtype set or it will default to string types
    #    Y = N.array(Y, dtype = N.float)
    #    print type(X), type(Y)
    pepFrag(seq, X, Y, w.canvas, plotSpec=False)
    w.show()
    sys.exit(app.exec_())
コード例 #2
0
ファイル: pepFragMain.py プロジェクト: pombredanne/toolz-1
def mainB():
    import numpy as N
#    import pylab as P
    import scipy as S
    import sys
    from PyQt4 import QtGui, QtCore
    from mpl_pyqt4_widget import MPL_Widget
    app = QtGui.QApplication(sys.argv)
    w = MPL_Widget(enableAutoScale = False, doublePlot = True, enableEdit = True)
    #seq = 'ANTHRACISAMES'
    seq = 'ANTHRACISSTERNE'
    #X = P.load('amesPredicted.csv', delimiter = ',')
    X = N.loadtxt('sternePredicted.csv', delimiter = ',')
    Y = S.rand(len(X))
    Y*=10
    randInt = []
    for i in xrange(int(0.25*len(X))):
        ind = N.random.random_integers(len(Y)-1)
        Y[ind] = N.random.random_integers(10)*10

    Y/=Y.max()
    Y*=100
#    X = N.array(X, dtype = N.float)#conver to array with dtype set or it will default to string types
#    Y = N.array(Y, dtype = N.float)
#    print type(X), type(Y)
    pepFrag(seq, X, Y, w.canvas, plotSpec = False)
    w.show()
    sys.exit(app.exec_())
コード例 #3
0
ファイル: pepFragMain.py プロジェクト: mfitzp/toolz
def mainA():
    import numpy as N
    import pylab as P
    import sys
    from PyQt4 import QtGui, QtCore
    from mpl_pyqt4_widget import MPL_Widget
    import xtandem_parser_class as XTParser

    app = QtGui.QApplication(sys.argv)

    XT = XTParser.XT_RESULTS('../XTTest.xml')
    selInd = XT.dataDict['pep_eVal'].argsort()
    firstInd = selInd[0]
    secondInd = selInd[1]
    topInd = selInd[30:33]

    w = MPL_Widget(enableAutoScale=False, doublePlot=True, enableEdit=True)

    ind = 53
    #    for ind in topInd:
    #        print XT.dataDict['pep_eVal'][ind]
    seq = XT.dataDict['pepID'][ind]
    X = XT.dataDict['xFrags'][ind]
    Y = XT.dataDict['yFrags'][ind]
    X = X.split()
    Y = Y.split()
    #        print type(X), type(Y)
    X = N.array(
        X, dtype=N.float
    )  #conver to array with dtype set or it will default to string types
    Y = N.array(Y, dtype=N.float)
    #    print type(X), type(Y)
    pepFrag(seq, X, Y, w.canvas)
    w.show()
    sys.exit(app.exec_())
コード例 #4
0
ファイル: pepFragMain.py プロジェクト: pombredanne/toolz-1
def mainA():
    import numpy as N
    import pylab as P
    import sys
    from PyQt4 import QtGui, QtCore
    from mpl_pyqt4_widget import MPL_Widget
    import xtandem_parser_class as XTParser

    app = QtGui.QApplication(sys.argv)

    XT = XTParser.XT_RESULTS('../XTTest.xml')
    selInd = XT.dataDict['pep_eVal'].argsort()
    firstInd = selInd[0]
    secondInd = selInd[1]
    topInd = selInd[30:33]

    w = MPL_Widget(enableAutoScale = False, doublePlot = True, enableEdit = True)

    ind = 53
#    for ind in topInd:
#        print XT.dataDict['pep_eVal'][ind]
    seq = XT.dataDict['pepID'][ind]
    X = XT.dataDict['xFrags'][ind]
    Y = XT.dataDict['yFrags'][ind]
    X = X.split()
    Y = Y.split()
#        print type(X), type(Y)
    X = N.array(X, dtype = N.float)#conver to array with dtype set or it will default to string types
    Y = N.array(Y, dtype = N.float)
#    print type(X), type(Y)
    pepFrag(seq, X, Y, w.canvas)
    w.show()
    sys.exit(app.exec_())