def mainB():
import numpy as N
# import pylab as P
import scipy as S
import sys
from PyQt4 import QtGui, QtCore
from mpl_pyqt4_widget import MPL_Widget
app = QtGui.QApplication(sys.argv)
w = MPL_Widget(enableAutoScale=False, doublePlot=True, enableEdit=True)
#seq = 'ANTHRACISAMES'
seq = 'ANTHRACISSTERNE'
#X = P.load('amesPredicted.csv', delimiter = ',')
X = N.loadtxt('sternePredicted.csv', delimiter=',')
Y = S.rand(len(X))
Y *= 10
randInt = []
for i in xrange(int(0.25 * len(X))):
ind = N.random.random_integers(len(Y) - 1)
Y[ind] = N.random.random_integers(10) * 10
Y /= Y.max()
Y *= 100
# X = N.array(X, dtype = N.float)#conver to array with dtype set or it will default to string types
# Y = N.array(Y, dtype = N.float)
# print type(X), type(Y)
pepFrag(seq, X, Y, w.canvas, plotSpec=False)
w.show()
sys.exit(app.exec_())
def mainB():
import numpy as N
# import pylab as P
import scipy as S
import sys
from PyQt4 import QtGui, QtCore
from mpl_pyqt4_widget import MPL_Widget
app = QtGui.QApplication(sys.argv)
w = MPL_Widget(enableAutoScale = False, doublePlot = True, enableEdit = True)
#seq = 'ANTHRACISAMES'
seq = 'ANTHRACISSTERNE'
#X = P.load('amesPredicted.csv', delimiter = ',')
X = N.loadtxt('sternePredicted.csv', delimiter = ',')
Y = S.rand(len(X))
Y*=10
randInt = []
for i in xrange(int(0.25*len(X))):
ind = N.random.random_integers(len(Y)-1)
Y[ind] = N.random.random_integers(10)*10
Y/=Y.max()
Y*=100
# X = N.array(X, dtype = N.float)#conver to array with dtype set or it will default to string types
# Y = N.array(Y, dtype = N.float)
# print type(X), type(Y)
pepFrag(seq, X, Y, w.canvas, plotSpec = False)
w.show()
sys.exit(app.exec_())
def mainA():
import numpy as N
import pylab as P
import sys
from PyQt4 import QtGui, QtCore
from mpl_pyqt4_widget import MPL_Widget
import xtandem_parser_class as XTParser
app = QtGui.QApplication(sys.argv)
XT = XTParser.XT_RESULTS('../XTTest.xml')
selInd = XT.dataDict['pep_eVal'].argsort()
firstInd = selInd[0]
secondInd = selInd[1]
topInd = selInd[30:33]
w = MPL_Widget(enableAutoScale=False, doublePlot=True, enableEdit=True)
ind = 53
# for ind in topInd:
# print XT.dataDict['pep_eVal'][ind]
seq = XT.dataDict['pepID'][ind]
X = XT.dataDict['xFrags'][ind]
Y = XT.dataDict['yFrags'][ind]
X = X.split()
Y = Y.split()
# print type(X), type(Y)
X = N.array(
X, dtype=N.float
) #conver to array with dtype set or it will default to string types
Y = N.array(Y, dtype=N.float)
# print type(X), type(Y)
pepFrag(seq, X, Y, w.canvas)
w.show()
sys.exit(app.exec_())
def mainA():
import numpy as N
import pylab as P
import sys
from PyQt4 import QtGui, QtCore
from mpl_pyqt4_widget import MPL_Widget
import xtandem_parser_class as XTParser
app = QtGui.QApplication(sys.argv)
XT = XTParser.XT_RESULTS('../XTTest.xml')
selInd = XT.dataDict['pep_eVal'].argsort()
firstInd = selInd[0]
secondInd = selInd[1]
topInd = selInd[30:33]
w = MPL_Widget(enableAutoScale = False, doublePlot = True, enableEdit = True)
ind = 53
# for ind in topInd:
# print XT.dataDict['pep_eVal'][ind]
seq = XT.dataDict['pepID'][ind]
X = XT.dataDict['xFrags'][ind]
Y = XT.dataDict['yFrags'][ind]
X = X.split()
Y = Y.split()
# print type(X), type(Y)
X = N.array(X, dtype = N.float)#conver to array with dtype set or it will default to string types
Y = N.array(Y, dtype = N.float)
# print type(X), type(Y)
pepFrag(seq, X, Y, w.canvas)
w.show()
sys.exit(app.exec_())