def main():
import mrc
im1 = mrc.read(
'/ami/data00/leginon/07sep26cal/rawdata/07sep26cal_00006m.mrc')
mag1 = 14500
im2 = mrc.read(
'/ami/data00/leginon/07sep26cal/rawdata/07sep26cal_00007m.mrc')
mag2 = 11500
'''
im1 = mrc.read('/ami/data00/leginon/07sep26cal/rawdata/07sep26cal_00002m.mrc')
mag1 = 50000
im2 = mrc.read('/ami/data00/leginon/07sep26cal/rawdata/07sep26cal_00003m.mrc')
mag2 = 29000
'''
'''
im1 = mrc.read('/ami/data00/leginon/07sep25jim/rawdata/07sep25jim_00005hl3.mrc')
mag1 = 7800
im2 = mrc.read('/ami/data00/leginon/07sep25jim/rawdata/07sep25jim_00005hl2.mrc')
mag2 = 6500
'''
'''
im1 = mrc.read('/ami/data00/leginon/07sep25jim/rawdata/07sep25jim_00004fa.mrc')
mag1 = 50000
im2 = mrc.read('/ami/data00/leginon/07sep25jim/rawdata/07sep25jim_00004fa2.mrc')
mag2 = 29000
'''
'''
im1 = mrc.read('../images/07apr03a/07apr03a_00003gr_00005sq_v01_00006hl.mrc')
mag1 = 5000
im2 = mrc.read('../images/07apr03a/07apr03a_00003gr_00005sq_v01.mrc')
mag2 = 800
'''
#im1 = mrc.read('../images/07sep17jim4/07sep17jim4_00001a.mrc')
#im2 = mrc.read('../images/07sep17jim4/07sep17jim4_00003a.mrc')
#im1 = mrc.read('im00.mrc')
#im2 = mrc.read('im01.mrc')
scale = float(mag2) / mag1
scalestart = scale - 0.02
scaleend = scale + 0.02
scaleinc = 0.005
anglestart = -3
angleend = 3
angleinc = 0.25
bin = 4
binim1 = imagefun.bin(im1, bin)
binim2 = imagefun.bin(im2, bin)
rotation, scale = findRotationScale(binim1, binim2, anglestart, angleend,
angleinc, scalestart, scaleend,
scaleinc)
shift = findShift(im1, im2, scale, rotation)
print 'BEST SHIFT', shift
def main():
import mrc
im1 = mrc.read("/ami/data00/leginon/07sep26cal/rawdata/07sep26cal_00006m.mrc")
mag1 = 14500
im2 = mrc.read("/ami/data00/leginon/07sep26cal/rawdata/07sep26cal_00007m.mrc")
mag2 = 11500
"""
im1 = mrc.read('/ami/data00/leginon/07sep26cal/rawdata/07sep26cal_00002m.mrc')
mag1 = 50000
im2 = mrc.read('/ami/data00/leginon/07sep26cal/rawdata/07sep26cal_00003m.mrc')
mag2 = 29000
"""
"""
im1 = mrc.read('/ami/data00/leginon/07sep25jim/rawdata/07sep25jim_00005hl3.mrc')
mag1 = 7800
im2 = mrc.read('/ami/data00/leginon/07sep25jim/rawdata/07sep25jim_00005hl2.mrc')
mag2 = 6500
"""
"""
im1 = mrc.read('/ami/data00/leginon/07sep25jim/rawdata/07sep25jim_00004fa.mrc')
mag1 = 50000
im2 = mrc.read('/ami/data00/leginon/07sep25jim/rawdata/07sep25jim_00004fa2.mrc')
mag2 = 29000
"""
"""
im1 = mrc.read('../images/07apr03a/07apr03a_00003gr_00005sq_v01_00006hl.mrc')
mag1 = 5000
im2 = mrc.read('../images/07apr03a/07apr03a_00003gr_00005sq_v01.mrc')
mag2 = 800
"""
# im1 = mrc.read('../images/07sep17jim4/07sep17jim4_00001a.mrc')
# im2 = mrc.read('../images/07sep17jim4/07sep17jim4_00003a.mrc')
# im1 = mrc.read('im00.mrc')
# im2 = mrc.read('im01.mrc')
scale = float(mag2) / mag1
scalestart = scale - 0.02
scaleend = scale + 0.02
scaleinc = 0.005
anglestart = -3
angleend = 3
angleinc = 0.25
bin = 4
binim1 = imagefun.bin(im1, bin)
binim2 = imagefun.bin(im2, bin)
rotation, scale = findRotationScale(binim1, binim2, anglestart, angleend, angleinc, scalestart, scaleend, scaleinc)
shift = findShift(im1, im2, scale, rotation)
print "BEST SHIFT", shift
def readMrc():
if len(sys.argv) <= 1:
return numpy.zeros((1,1,1))
mrcfile = sys.argv[1]
if not os.path.isfile(mrcfile):
return numpy.zeros((1,1,1))
import mrc
voldata = mrc.read(mrcfile)
array = numpy.where(voldata > 0.5, 1.0, 0.0)
return array
