def normalize(C): # briefly transform to msi to be able to apply standard normalizer msi = Msi() msi.set_image(C.copy()) standard_normalizer.normalize(msi) # back to array format used here: return msi.get_image()
def test_add_dummy_wavelengths_automatically(self): msi_no_wavelengths_set = Msi() msi_no_wavelengths_set.set_image(self.msi.get_image()) nr_wavelengths = msi_no_wavelengths_set.get_image().shape[-1] np.testing.assert_equal(msi_no_wavelengths_set.get_wavelengths(), np.arange(nr_wavelengths), "correct dummy wavelength values set")