def test_updateRetentionTime(self):
run = Run([], {},
125704171604355508,
'merged.osw',
'file.mzML.gz',
'file.mzML.gz',
useCython=False)
p = Precursor(self.trgr_id, run)
run.addPrecursor(p, self.peptide_group_label)
run.getPrecursor(self.peptide_group_label,
self.trgr_id).add_peakgroup_tpl(
(364283, 0.001, 1.47, 3000),
self.trgr_id,
cluster_id=-1)
t_ref = np.array([
np.nan, 21.1, 21.2, 21.3, 21.35, 21.4, 21.5, 21.55, 21.6, 21.7,
21.8, np.nan
])
t_eXp = np.array([
np.nan, 1.1, 1.2, 1.3, 1.35, 1.4, 1.5, 1.55, 1.6, 1.7, 1.8, np.nan
])
chromAlign.updateRetentionTime(run, self.peptide_group_label,
self.trgr_id, t_ref, t_eXp)
self.assertEqual(
run.getPrecursor(self.peptide_group_label,
self.trgr_id).peakgroups_,
[(364283, 0.001, 21.5, 3000, None)])
