def main(): # o1 = create_test0() # just a fully hybridized strand. # o1 = create_test0B() # just a fully hybridized strand. # o1 = create_test0C() # just a fully hybridized strand. # o1 = create_test1() # testing open-loop # o1 = create_test1B() # testing open-loop with the initialiation penalty # o1 = create_test2() # a very simple test being .(.+.). o1 = create_test2B() # a very simple test being .(.+.). # o1.bimolecular_scaling = 777.0 o1.DNA23Metropolis() # o1 = create_test3() # this is the bi-molecular test # o1 = create_test4() # this is the lightbulb # o1 = create_test5() # testing multi-loop code # o1 = create_test6() # interior loop. # o1 = create_test6B() # small interior loop. # o1 = create_test7() # Bulge loop. # o1 = create_test8() # Hairpin loop. # o1 = create_test9() # Small open-loop code # o1 = create_test10() # half open duplex # o1 = create_test11() # Oscillator gate # o1 = create_test12() # displacement situation. # o1 = create_test13() # this is a test for dissociation # setArrheniusConstantsNM1(o1) # o1.DNA23Metropolis() s = SimSystem(o1) # s.start() s.initialInfo()
def main(): # o1 = create_test0() # just a fully hybridized strand. # o1 = create_test0B() # just a fully hybridized strand. # o1 = create_test0C() # just a fully hybridized strand. # o1 = create_test1() # testing open-loop # o1 = create_test1B() # testing open-loop with the initialiation penalty # o1 = create_test2() # a very simple test # o1 = create_test3() # this is the bi-molecular test # o1 = create_test4() # this is the lightbulb # o1 = create_test5() # testing multi-loop code # o1 = create_test6() # interior loop. # o1 = create_test6B() # small interior loop. # o1 = create_test7() # Bulge loop. # o1 = create_test8() # Hairpin loop. # o1 = create_test9() # Small open-loop code # o1 = create_test10() # half open duplex o1 = create_test11() # Oscillator gate # setArrheniusConstantsNM1(o1) s = SimSystem(o1) # s.start() s.initialInfo()
def main2(): o1 = create_setup_interal(toehold_t, toehold_dd, domain_R, 25) s = SimSystem(o1) s.initialInfo() print "Testing loop internals"
def initialInfo(self): myOptions = self.factory.new(777) simSys = SimSystem(myOptions) simSys.initialInfo()
def main(): o1 = create_test10() # half open duplex s = SimSystem(o1) s.initialInfo()