def monitor_run(n, length, maxP, nsample, scoreFunc,
monitorClass=MonitorRun, **kwargs):
mr = monitorClass(nsample, scoreFunc)
mut.run_test(n, length=length, maxP=maxP, searchFunc=mr, **kwargs)
return mr.p_data
def calc_neighb_dist(n, **kwargs):
root, nseq = mut.run_test(n, **kwargs)
tree = mut.build_ete_tree(root)
return count_tree_neighbors(tree).values()
