else: #read the file containing the percentage of observed redshifts per sector
frac_redshift = np.loadtxt(args.fc_file,
usecols=(int(args.fc_column), ))
for fn in args.ifname: #loop through the input file names
if (args.verbose == True):
print("Process catalogue '{0}'.".format(fn.name))
cat = np.loadtxt(fn)
if (args.verbose == True):
print("Catalogue read")
if (args.shuffle != None): #if it is required to shuffle the catalogue
np.random.shuffle(cat) #shuffle the catalogue
ofilesh, skip = mf.insert_src(
fn.name,
args.shuffle,
overwrite=args.soverwrite,
skip=args.sskip
) #create the file name for the shuffled catalogue
if (skip == True):
print("Skipping")
continue
fn = open(ofilesh,
"w") #open the shuffled catalogue output file name
if (args.header == True):
of.write(headersh) #add the header
np.savetxt(fn, cat, fmt=args.sfmt, delimiter="\t") #save the file
fn.close()
#create the output file name
if (args.replace == None):
ofile, skip = mf.insert_src(fn.name,
p.add_argument("-c", "--column", action="store", type=int, default=4, help="Column number in the input file containing the covariance.")
return p.parse_args(args=argv)
if __name__ == "__main__": # if is the main
args = parse(sys.argv[1:])
for fn in args.ifname: #file name loop
if(args.verbose == True):
print("Process catalogue '{0}'.".format(fn.name))
#create the output file name and check it
if(args.replace == None):
ofile, skip = mf.insert_src(fn.name, args.insert, overwrite=args.overwrite, skip=args.skip)
else:
ofile, skip = mf.replace_src(fn.name, args.replace, overwrite=args.overwrite, skip=args.skip)
if(skip == True):
print("Skipping")
continue
cov = np.loadtxt(fn, usecols=[args.column]) #read the covariance
dimcov = int(np.sqrt(cov.size)) #size of the output covariance matrix
cov = cov.reshape([dimcov,dimcov]) #reshape to a square
np.savetxt(ofile, cov, fmt="%8.7e", delimiter="\t") #save the matrix
if(args.verbose == True):
print( "File '{0}' saved".format(ofile) )
default="%7.6e",
action="store",
nargs='+',
help="Format of the output files")
return p.parse_args(args=argv)
if __name__ == "__main__": #if it's the main
args = parse(sys.argv[1:])
#create the output file names
if (args.replace == None): #first file
ofiled1, skip = mf.insert_src(args.catname.name,
args.insert[::2],
overwrite=args.overwrite)
ofiled2, skip = mf.insert_src(args.catname.name,
args.insert[1:],
overwrite=args.overwrite)
else:
ofiled1, skip = mf.replace_src(args.catname.name,
args.replace[:2],
overwrite=args.overwrite)
ofiled2, skip = mf.replace_src(args.catname.name,
args.replace[::2],
overwrite=args.overwrite)
cat = np.loadtxt(args.catname) #read the input catalogue
if (args.sepname !=
None): #if a file with the criteria for the separation is given
