def libs(request):
user_libs_qs = user_accessible_libs(request.user)
# modalFormData = Library.getModalFormData()
modalFormData = build_modal_form_data(Library)
libs_filter = LibraryFilter(
data=request.GET,
request=request,
queryset=user_libs_qs,
filter_id='lib_filter',
form_id='lib_filter_form'
)
table = ModalEditLibrariesTable(
data=libs_filter.qs.order_by('-modified_date'),
order_by="id",
data_target=modalFormData['edit']['modal_id'],
a_class="btn btn-primary " + modalFormData['edit']['url_class'],
table_id='lib_table',
form_id='lib_table_form',
form_action=reverse('modify_libs'),
view_name='lib_edit')
RequestConfig(request, paginate={'per_page': 5}).configure(table)
buttons = [
{'id': 'delete_selected', 'text': 'Delete Selected','class': 'btn-danger btn-confirm'},
# modalFormData['new']['button']
{'id': 'new_lib_btn','text': 'New Library','class': 'btn-primary ' + 'lib_new_url',
'href':reverse('lib_new', kwargs={'form_class':"lib_new_form"})},
]
modals = [
modalFormData['edit'],
modalFormData['new'],
]
context = build_filter_table_context(libs_filter, table, modals, buttons)
return render(request,'experiment/lib_templates/libraries.html', context)
def plates(request, pk_exp=None):
modalFormData = build_modal_form_data(Plate)
plateFilter = PlateFilter(
data=request.GET,
request=request,
queryset=user_editable_plates(request.user),
filter_id='proj_filter',
form_id='proj_filter_form',
)
table = ModalEditPlatesTable(
data=plateFilter.qs.order_by('-modified_date'),
data_target=modalFormData['edit']['modal_id'],
a_class="btn btn-primary " + modalFormData['edit']['url_class'],
table_id='plate_table',
form_id='plate_table_form',
form_action=reverse('modify_plates'),
view_name='plate_edit',
)
RequestConfig(request, paginate={'per_page': 20}).configure(table)
buttons = []
modals = [
modalFormData['edit'],
]
context = build_filter_table_context(plateFilter, table, modals, buttons)
return render(request, 'experiment/proj_templates/projects.html', context)
def plate(request, pk_plate, pk_proj=None):
from my_utils.constants import idx_to_letters_map, letters_to_idx_map
p = get_object_or_404(Plate, pk=pk_plate)
if p:
plateForm = PlateForm(instance=p)
### Handle PlateForm()
if request.method == "POST":
if request.is_ajax():
pass
else:
plateForm = PlateForm(request.POST, instance=p)
if plateForm.is_valid():
update_instance(p, plateForm.cleaned_data,
plateForm.cleaned_data.keys())
messages.success(request, 'Plate ' + p.name + ' updated.')
return redirect('plate', pk_plate=p.pk)
else:
wells_qs = p.wells.select_related(
'compound',
'soak').prefetch_related('subwells').order_by('name')
wells = [w for w in wells_qs]
well_form_map = {}
subwells = []
for w in wells:
subwells.extend([s for s in w.subwells.all()])
well_form_map[w.id] = WellPriorityForm(instance=w)
reshaped_wells = reshape(wells, (p.numRows, p.numCols))
soaks_qs = Soak.objects.select_related(
'dest', 'src').filter(dest__in=subwells)
soaks = [s for s in soaks_qs]
subwellToSoakMap = dict([(s.dest.name, s) for s in soaks])
context = {}
from lib.tables import CompoundsTable, ModalEditCompoundsTable
from lib.filters import CompoundFilter
compoundsFilter = CompoundFilter(request.GET,
queryset=p.compounds.all(),
filter_id='compounds_filter',
form_id='compounds_filter_form')
compoundsTable = ModalEditCompoundsTable(
data=compoundsFilter.qs,
table_id='compounds_table',
)
RequestConfig(request, paginate={
'per_page': 20
}).configure(compoundsTable)
context = build_filter_table_context(compoundsFilter,
compoundsTable, [], [])
context.update({
'wellMatrix': reshaped_wells,
'subwellToSoakMap': subwellToSoakMap,
'plate': p,
'idx_to_letters_map': idx_to_letters_map,
'canEdit': True,
'well_form_map': well_form_map,
'plateForm': plateForm,
})
return render(request, 'experiment/exp_templates/plate.html', context)
def experiments(request, qs=None):
exp_qs = user_editable_experiments(request.user)
if qs:
exp_qs = qs
modalFormData = build_modal_form_data(Experiment)
expFilter = ExperimentFilter(
data=request.GET,
request=request,
queryset=exp_qs,
filter_id='exp_filter',
form_id='exp_filter_form',
)
table = ModalEditExperimentsTable(
data=expFilter.qs.order_by('-modified_date'),
data_target=modalFormData['edit']['modal_id'],
a_class="btn btn-primary " + modalFormData['edit']['url_class'],
table_id='exp_table',
form_id='exp_table_form',
form_action=reverse('modify_exps'),
view_name='exp_edit',
)
RequestConfig(request, paginate={'per_page': 5}).configure(table)
buttons = [
{
'id': 'delete_selected',
'text': 'Delete Selected',
'class': 'btn-danger btn-confirm'
},
{
'id': 'new_exp_btn',
'text': 'New Experiment',
'class': 'btn-primary ' + 'exp_new_url',
'href': reverse('exp_new')
},
]
modals = [
modalFormData['new'],
modalFormData['edit'],
]
context = build_filter_table_context(expFilter, table, modals, buttons)
return render(request, 'experiment/exp_templates/experiments.html',
context) #,{'experiments':})
def lib_compounds(request, pk_lib):
lib_qs = Library.objects.filter(id=pk_lib)
lib = lib_qs.first()
expsTable = ExperimentsTable(
data=lib.experiments.all(),
exclude=['project', 'library', 'protein', 'owner', 'checked'],
)
compounds = lib.compounds.filter()
compounds_filter = CompoundFilter(data=request.GET,
queryset=compounds,
filter_id='compounds_filter',
form_id='compounds_filter_form')
table = ModalEditCompoundsTable(
exclude=[
'id',
'chemicalName',
'chemicalFormula',
'smiles',
'zincURL',
],
data=compounds_filter.qs,
table_id='compounds_table',
form_id='compounds_table_form',
form_action=reverse('modify_lib_compounds', kwargs={'pk_lib': pk_lib}),
)
RequestConfig(request, paginate={'per_page': 10}).configure(table)
url_class = "compounds_edit_url"
modal_id = "compounds_edit_modal"
exc = list(ModalEditLibrariesTable.Meta.fields)
libTable = ModalEditLibrariesTable(
data=lib_qs,
data_target=modal_id,
a_class="btn btn-primary " + url_class,
exclude=exc,
attrs={'th': {
'id': 'lib_table_header'
}})
buttons = [
{
'id': 'remove_compounds',
'text': 'Remove Selected',
'class': 'btn-danger btn-confirm',
'msg': 'Remove selected compounds from library?'
},
{
'id': 'deactivate_compounds',
'text': 'Deactivate Selected',
'class': 'btn-secondary btn-confirm'
},
{
'id': 'activate_compounds',
'text': 'Activate Selected',
'class': 'btn-secondary btn-confirm'
},
]
modals = [
{
'url_class': url_class,
'modal_id': modal_id,
'form_class': "compounds_edit_form"
},
{
'url_class': 'update_compounds_from_file_url',
'modal_id': 'update_compounds_from_file_modal',
'form_class': "update_compounds_from_file_url_form"
},
]
context = build_filter_table_context(compounds_filter, table, modals,
buttons)
context.update({
'expsTable': expsTable,
'lib': lib,
'libTable': libTable,
})
return render(request, 'experiment/lib_templates/library_compounds.html',
context)