def cartesian(x, y=None, z=None):
max_dim = 1
for val in (x, y, z):
if is_array(type(val)):
if val.size > max_dim:
max_dim = val.size
if max_dim != 1:
if is_scalar(type(x)) or (is_array(type(x)) and x.shape == (1, )):
x = ones(max_dim) * x
if is_scalar(type(y)) or (is_array(type(y)) and y.shape == (1, )):
y = ones(max_dim) * y
if is_scalar(type(z)) or (is_array(type(z)) and z.shape == (1, )):
z = ones(max_dim) * z
if type(x) == type(None):
x = zeros(max_dim)
if type(y) == type(None):
y = zeros(max_dim)
if type(z) == type(None):
z = zeros(max_dim)
if x.ndim == y.ndim == z.ndim == 1:
if x.shape == y.shape == z.shape:
return vstack((x, y, z)).T
print 'EE: CoordinateSystem.cartesian() - This should not happen!'
def cartesian(x, y=None, z=None):
max_dim = 1
for val in (x, y, z):
if is_array(type(val)):
if val.size > max_dim:
max_dim = val.size
if max_dim != 1:
if is_scalar(type(x)) or (is_array(type(x)) and x.shape == (1,)):
x = ones(max_dim)*x
if is_scalar(type(y)) or (is_array(type(y)) and y.shape == (1,)):
y = ones(max_dim)*y
if is_scalar(type(z)) or (is_array(type(z)) and z.shape == (1,)):
z = ones(max_dim)*z
if type(x) == type(None):
x = zeros(max_dim)
if type(y) == type(None):
y = zeros(max_dim)
if type(z) == type(None):
z = zeros(max_dim)
if x.ndim == y.ndim == z.ndim == 1:
if x.shape == y.shape == z.shape:
return vstack((x,y,z)).T
print 'EE: CoordinateSystem.cartesian() - This should not happen!'
def spherical(r, theta=None, phi=None):
# def repetiveStuff():
# self.type = 'spherical'
# self.shape = self.p.shape
max_dim = 1
for val in (r, theta, phi):
if is_array(type(val)):
if val.size > max_dim:
max_dim = val.size
if max_dim != 1:
if is_scalar(type(r)) or (is_array(type(r)) and r.shape == (1,)):
r = ones(max_dim)*r
if is_scalar(type(theta)) or (is_array(type(theta)) and theta.shape == (1,)):
theta = ones(max_dim)*theta
if is_scalar(type(phi)) or (is_array(type(phi)) and phi.shape == (1,)):
phi = ones(max_dim)*phi
if type(r) == type(None):
r = zeros(max_dim)
if type(theta) == type(None):
theta = zeros(max_dim)
if type(phi) == type(None):
phi = zeros(max_dim)
if r.ndim == theta.ndim == phi.ndim == 1:
if r.shape == theta.shape == phi.shape:
p = vstack((r,theta,phi)).T
# repetiveStuff()
return p
print 'EE: CoordinateSystem.spherical() - This should not happen!'
def __new__(self, M=10, phi=0, normalised=True):
# Create the window
if phi == 0:
win = np.ones((M, ), dtype=None) / M
else:
wc = np.ones(M, dtype=complex) # Window coefficients
m = np.arange(0, M) # Create M indeces from 0 to 1
a = exp(-1j * 2 * pi * m * phi) # Steering vector
ws = dot(wc, a) # Normalisation factor
win = a * wc / ws # Steered and normalised window
w = np.Ndarray.__new__(self, win)
# axes=('M',),
# desc = 'Rectangular (phi=%d)'%phi)
# desc='Rectangular (phi=%d)'%phi,
# shape_desc=('M','1'))
return w
def spherical(r, theta=None, phi=None):
# def repetiveStuff():
# self.type = 'spherical'
# self.shape = self.p.shape
max_dim = 1
for val in (r, theta, phi):
if is_array(type(val)):
if val.size > max_dim:
max_dim = val.size
if max_dim != 1:
if is_scalar(type(r)) or (is_array(type(r)) and r.shape == (1, )):
r = ones(max_dim) * r
if is_scalar(type(theta)) or (is_array(type(theta))
and theta.shape == (1, )):
theta = ones(max_dim) * theta
if is_scalar(type(phi)) or (is_array(type(phi))
and phi.shape == (1, )):
phi = ones(max_dim) * phi
if type(r) == type(None):
r = zeros(max_dim)
if type(theta) == type(None):
theta = zeros(max_dim)
if type(phi) == type(None):
phi = zeros(max_dim)
if r.ndim == theta.ndim == phi.ndim == 1:
if r.shape == theta.shape == phi.shape:
p = vstack((r, theta, phi)).T
# repetiveStuff()
return p
print 'EE: CoordinateSystem.spherical() - This should not happen!'
def optimalLightness(npts, cmap_type, l_range=(0.0, 1.0)):
"""
Helper function defining the optimality condition for a colormap.
Depending on the colormap this might mean different things. The
l_range argument can be used to restrict the lightness range so it
does have to equal the full range.
"""
if cmap_type == "sequential_rising":
opt = np.linspace(l_range[0], l_range[1], npts)
elif cmap_type == "sequential_falling":
opt = np.linspace(l_range[1], l_range[0], npts)
elif cmap_type == "diverging_center_top":
s = npts // 2
opt = np.empty(npts)
opt[:s] = np.linspace(l_range[0], l_range[1], s)
opt[s:] = np.linspace(l_range[1], l_range[0], npts - s)
elif cmap_type == "diverging_center_bottom":
s = npts // 2
opt = np.empty(npts)
opt[:s] = np.linspace(l_range[1], l_range[0], s)
opt[s:] = np.linspace(l_range[0], l_range[1], npts - s)
elif cmap_type == "flat":
opt = np.ones(npts) * l_range[0]
return opt
def beta(t):
if t==(len(X)-1):
return np.ones(self.bins)
return # TODO return the apprpriate value
def beta(t):
if t==(len(X)):
return np.ones(self.bins)
evidence = np.array([self.pEmission(z,X[t-1]) for z in self.states])
return np.array(M(t)*np.matrix(evidence*beta(t+1)).T)[...,0]
return # TODO return the appropriate value
# backwards algorithm
def beta(t):
if t==(len(X)-1):
return np.ones(self.bins)
return # TODO return the apprpriate value
res = alpha(t)*beta(t)
return res/sum(res)
if __name__ == "__main__":
import matplotlib.pyplot as plt
# Define size of network
T = 100 # number of timebinss
N = 3 # number of candidates
M = 5 # number of polls
# Randomly model parameters based on priors
I = 2*np.ones(N)
B = 10*np.random.randn(M,N)
B = np.exp(B)
W = np.concatenate((.5*np.random.randn(1) + 7,np.random.randn(M)))
W = np.exp(W)
model = Model(i=I,b=B,w=W)
Z, X = model.generate(T)
plt.plot(range(T),Z)
plt.show()
def normalize(A, delLoops=False):
B = deepcopy(A)
J = np.ones((len(A), len(A)))
output = B / (B @ J)
output[np.isnan(output)] = 0
return output
res = 1
for i in xrange(self.num_polls):
alpha = self.b[i]*z
res *= Beta.pdf(x[i,0], alpha[0], alpha[1])
return res
if __name__ == "__main__":
import matplotlib.pyplot as plt
# Generate a test case
# Define size of network
T = 100 # number of time steps
M = 3 # number of polls
# Randomly model parameters based on priors
I = 2*np.ones(2)
B = np.random.randn(M,2)
B = np.exp(B)
W = np.concatenate((.5*np.random.randn(1) + 7,np.random.randn(M)))
W = np.exp(W)
model = BetaModel(i=I,b=B,w=W)
## Generate Test Data
Z, X = model.generate(T)
## Plot Test Data
plt.plot(range(T),Z)
plt.show()
print np.sum(model.pState(X,1))
y_parts = f.readline().split(" ")
x_coord = float(x_parts[-1][:-2])
y_coord = float(y_parts[-1][:-1])
output[currID].append(x_coord)
output[currID].append(y_coord)
for j in range(3):
f.readline()
return output
if __name__ == '__main__':
betas = np.linspace(1e-3, 1, 25)
num_betas = 8
name = 'mod'
x = np.ones((num_betas, 3))
y = np.ones((num_betas, 3))
# blue to purple, use 8
x[:, 0:3] = (0, .5, .5)
y[:, 0:3] = (.5, 0, .5)
# green to orange, use 6
# x[:, 0:3] = (0, .5, 0)
# y[:, 0:3] = (1, .5, 0)
#sw colorscheme
# x[:, 0:3] = (.75, .25, 0)
# y[:, 0:3] = (0, .75, .5)
c = np.linspace(0, 1, num_betas)[:, None]
gradient = x + (y - x) * c
def getWindow(
image,
tx_coords, # x,y
tx_angle, # radians
img_coords, # x_min, x_max, y_min, y_max
width=0.8,
scale=1):
Nx, Ny = image.shape
N = Nx
img_width = img_coords[1] - img_coords[0]
img_length = img_coords[3] - img_coords[2]
x_mean = np.mean(img_coords[0:2])
y_mean = np.mean(img_coords[2:4])
dx = float(img_width) / Nx
dy = float(img_length) / Ny
image_window = np.ones(image.shape)
x_old = np.zeros(N)
x_new = np.zeros(N)
# tx_img_range = img_coords[2]
r = img_coords[2] + dy / 2
has_overflowed = False
for row in range(Ny):
row_data = image_window[:, row]
x_cut = r * np.sin(tx_angle / 2)
# x_cut_rel = x_cut / extent[0]
# w_idx = np.linspace(0,1,N)
x_old[:] = np.linspace(x_mean - (2 - width) * x_cut,
x_mean + (2 - width) * x_cut,
N) #*0.5/img_width + 0.5
x_new[:] = np.linspace(img_coords[0], img_coords[1],
Nx) #*0.5/img_width + 0.5
up = x_new[x_new > x_old[0]]
updown = up[up <= x_old[-1]]
# print(x_cut, updown.shape[0])
Nlower = Nx - up.shape[0]
Nhigher = Nx - updown.shape[0] - Nlower
transition = (0.5 + 0.5 * np.cos(
np.linspace(0, np.pi, int(Nx * width * x_cut /
(2 * img_width))))) * scale + (1 - scale)
# fn = None
# if row == 0:
# fn = pl.figure()
# ax = fn.add_subplot(121)
# ax.plot(transition)
Nt = transition.shape[0]
if N <= 2 * Nt:
w = np.ones(N)
has_overflowed = True
else:
w = np.hstack(
(2 - scale - transition, np.ones(N - 2 * Nt), transition))
w_new_center = np.interpolate1D(x_old,
w,
updown,
kind='linear',
fill_value=1 - scale)
w_new = np.hstack((np.ones(Nlower) * (1 - scale), w_new_center,
np.ones(Nhigher) * (1 - scale)))
image_window[:, row] = w_new
# if row == 0:
# ax = fn.add_subplot(122)
# ax.plot(w_new)
# fn.savefig('test2.eps')
r = r + dy
if has_overflowed:
print("WARNING: Not making a window")
return image_window