def plotbinarylines_quat(ax,
comps,
fom,
ellabels=['A', 'B', 'C', 'D'],
legloc=4,
**kwargs):
cb = comps > .001
qtemp = QuaternaryPlot(None)
ms = ['<', '>', '^', 'v', 's', 'D']
# for i in range(4):
# barr=cb[:, i]>.999
# if not numpt.any(barr):
# continue
# ax.plot(c[j], y, ms[count], c=c, ms=ms, markeredgecolor='None', label='%s,%s' %(ellabels[i], ellabels[j]), **kwargs)
count = -1
for i in range(4):
for j in range(i + 1, 4):
count += 1
k, l = tuple(set(range(4)) - set([i, j]))
barr = numpy.array([numpy.logical_not(b[k] | b[l])
for b in cb]) #numpy.logical_xor(b[i], b[j])&
if not numpy.any(barr):
continue
cmps = comps[barr]
inds = numpy.argsort(cmps[:, j])
cmps = cmps[inds]
cols = qtemp.rgb_comp(cmps)
ys = fom[barr][inds]
for count2, (c, col, y) in enumerate(zip(cmps, cols, ys)):
if count2 == len(ys) // 2:
ax.plot(c[j],
y,
marker=ms[count],
c=col,
markeredgecolor=col,
label='%s,%s' % (ellabels[i], ellabels[j]),
**kwargs)
else:
ax.plot(c[j],
y,
marker=ms[count],
c=col,
markeredgecolor=col,
**kwargs)
#ax.plot(c[j], y, marker=ms[count], c=col, markeredgecolor='None')
for count3, (c1, col1, y1, c2, col2, y2) in enumerate(
zip(cmps[:-1], cols[:-1], ys[:-1], cmps[1:], cols[1:],
ys[1:])):
col = numpy.array([col1, col2]).mean(axis=0)
ax.plot([c1[j], c2[j]], [y1, y2], '-', c=col, **kwargs)
try:
ax.legend(loc=legloc).draggable()
except:
pass
def plotbinarylines_axandinset(ellabels=['A', 'B', 'C', 'D'],
fig=None,
mainax=[.3, .12, .6, .83],
insetax=[0, .7, .2, .3],
numcomppts=21,
view_azim=-159,
view_elev=30,
**kwargs):
if fig is None:
fig = pylab.figure(figsize=(8, 5))
ax = fig.add_axes(mainax)
ax2 = fig.add_axes(insetax, projection='3d')
stpq = QuaternaryPlot(ax2, ellabels=ellabels)
comppairs = []
a = numpy.linspace(0, 1, 21)
count = -1
for i in range(4):
for j in range(i + 1, 4):
count += 1
b = numpy.zeros((numcomppts, 4), dtype='float64')
b[:, i] = a
b[:, j] = 1. - a
comppairs += [(c1, c2) for c1, c2 in zip(b[:-1], b[1:])]
for (c1, c2) in comppairs:
stpq.line(c1,
c2,
fmt='-',
c=stpq.rgb_comp([(c1 + c2) / 2.])[0],
**kwargs)
stpq.set_projection(azim=view_azim, elev=view_elev)
stpq.label()
return ax, ax2
def __init__(self, previousmm, execute=True, **kwargs):
super(MainMenu, self).__init__(None)
self.ui=plottypeDialog(self, **kwargs)
intervs=20
compsint=[[b, c, (intervs-a-b-c), a] for a in numpy.arange(0,intervs+1)[::-1] for b in numpy.arange(0,intervs+1-a) for c in numpy.arange(0,intervs+1-a-b)][::-1]
print len(compsint)
comps=numpy.float32(compsint)/intervs
pylab.figure()
stpquat=QuaternaryPlot(111)
cols=stpquat.rgb_comp(comps)
self.ui.loadplotdata(comps, cols)
if execute:
self.ui.exec_()
class binarylines:
def __init__(self, ax, insetax, ellabels=['A', 'B', 'C', 'D'], offset=0.02, numcomppts=21, view_azim=-159, view_elev=30, **kwargs):
self.ax=ax
self.insetax=insetax
self.ellabels=ellabels
self.stpq=QuaternaryPlot(insetax, ellabels=ellabels, offset=offset)
comppairs=[]
a=numpy.linspace(0, 1, 21)
count=-1
for i in range(4):
for j in range(i+1, 4):
count+=1
b=numpy.zeros((numcomppts, 4), dtype='float64')
b[:, i]=a
b[:, j]=1.-a
comppairs+=[(c1, c2) for c1, c2 in zip(b[:-1], b[1:])]
for (c1, c2) in comppairs:
self.stpq.line(c1, c2, fmt='-', c=self.stpq.rgb_comp([(c1+c2)/2.])[0], **kwargs)
self.stpq.set_projection(azim=view_azim, elev=view_elev)
self.stpq.label()
def plotbinaryfom(self, comps, fom, **kwargs):
cb=comps>.001
ms=['<','>','^','v','s','D']
count=-1
for i in range(4):
for j in range(i+1, 4):
count+=1
k, l=tuple(set(range(4))-set([i, j]))
barr=numpy.array([numpy.logical_not(b[k]|b[l]) for b in cb]) #numpy.logical_xor(b[i], b[j])&
if not numpy.any(barr):
continue
cmps=comps[barr]
inds=numpy.argsort(cmps[:, j])
cmps=cmps[inds]
cols=self.stpq.rgb_comp(cmps)
ys=fom[barr][inds]
for count2, (c, col, y) in enumerate(zip(cmps, cols, ys)):
if count2==len(ys)//2:
self.ax.plot(c[j], y, marker=ms[count], c=col, markeredgecolor=col, label='%s,%s' %(self.ellabels[i], self.ellabels[j]), **kwargs)
else:
self.ax.plot(c[j], y, marker=ms[count], c=col, markeredgecolor=col, **kwargs)
#self.ax.plot(c[j], y, marker=ms[count], c=col, markeredgecolor='None')
for count3, (c1, col1, y1, c2, col2, y2) in enumerate(zip(cmps[:-1], cols[:-1], ys[:-1], cmps[1:], cols[1:], ys[1:])):
col=numpy.array([col1, col2]).mean(axis=0)
self.ax.plot([c1[j], c2[j]], [y1, y2], '-', c=col, **kwargs)
def binarylineslegend(self, **kwargs):
try:
self.ax.legend(**kwargs)
except:
pass
def __init__(self, parent=None, title='', folderpath=None):
super(dialog, self).__init__(parent)
plotw = plotwidget(self)
ax = plotw.axes
intervs = 20
compsint = [[b, c, (intervs - a - b - c), a]
for a in numpy.arange(0, intervs + 1)[::-1]
for b in numpy.arange(0, intervs + 1 - a)
for c in numpy.arange(0, intervs + 1 - a - b)][::-1]
print len(compsint)
comps = numpy.float32(compsint) / intervs
pylab.figure()
stpquat = QuaternaryPlot(111)
cols = stpquat.rgb_comp(comps)
stpquat.scatter(comps, c=cols, s=100, edgecolors='none')
stpquat.label()
self.tf = ternaryfaces_shells(ax, nintervals=intervs)
self.tf.label()
self.tf.scatter(comps, cols, skipinds=[0, 1, 2, 3], s='patch')
QObject.connect(plotw, SIGNAL("genericclickonplot"), self.plotclick)
mainlayout = QGridLayout()
mainlayout.addWidget(plotw, 0, 0)
self.setLayout(mainlayout)
def __init__(self, previousmm, execute=True, **kwargs):
super(MainMenu, self).__init__(None)
self.ui = plottypeDialog(self, **kwargs)
intervs = 20
compsint = [[b, c, (intervs - a - b - c), a]
for a in numpy.arange(0, intervs + 1)[::-1]
for b in numpy.arange(0, intervs + 1 - a)
for c in numpy.arange(0, intervs + 1 - a - b)][::-1]
print len(compsint)
comps = numpy.float32(compsint) / intervs
pylab.figure()
stpquat = QuaternaryPlot(111)
cols = stpquat.rgb_comp(comps)
self.ui.loadplotdata(comps, cols)
if execute:
self.ui.exec_()
def __init__(self, ax, insetax, ellabels=['A', 'B', 'C', 'D'], offset=0.02, numcomppts=21, view_azim=-159, view_elev=30, **kwargs):
self.ax=ax
self.insetax=insetax
self.ellabels=ellabels
self.stpq=QuaternaryPlot(insetax, ellabels=ellabels, offset=offset)
comppairs=[]
a=numpy.linspace(0, 1, 21)
count=-1
for i in range(4):
for j in range(i+1, 4):
count+=1
b=numpy.zeros((numcomppts, 4), dtype='float64')
b[:, i]=a
b[:, j]=1.-a
comppairs+=[(c1, c2) for c1, c2 in zip(b[:-1], b[1:])]
for (c1, c2) in comppairs:
self.stpq.line(c1, c2, fmt='-', c=self.stpq.rgb_comp([(c1+c2)/2.])[0], **kwargs)
self.stpq.set_projection(azim=view_azim, elev=view_elev)
self.stpq.label()
def __init__(self, parent=None, title='', folderpath=None):
super(dialog, self).__init__(parent)
plotw=plotwidget(self)
ax=plotw.axes
intervs=20
compsint=[[b, c, (intervs-a-b-c), a] for a in numpy.arange(0,intervs+1)[::-1] for b in numpy.arange(0,intervs+1-a) for c in numpy.arange(0,intervs+1-a-b)][::-1]
print len(compsint)
comps=numpy.float32(compsint)/intervs
pylab.figure()
stpquat=QuaternaryPlot(111)
cols=stpquat.rgb_comp(comps)
stpquat.scatter(comps, c=cols, s=100, edgecolors='none')
stpquat.label()
self.tf=ternaryfaces(ax)
self.tf.label()
self.tf.scatter(comps, cols, skipinds=[0, 1, 2, 3], s='patch')
QObject.connect(plotw, SIGNAL("genericclickonplot"), self.plotclick)
mainlayout=QGridLayout()
mainlayout.addWidget(plotw, 0, 0)
self.setLayout(mainlayout)
def plotbinarylines_quat(ax, comps, fom, ellabels=['A', 'B', 'C', 'D'], legloc=4, **kwargs):
cb=comps>.001
qtemp=QuaternaryPlot(None)
ms=['<','>','^','v','s','D']
# for i in range(4):
# barr=cb[:, i]>.999
# if not numpt.any(barr):
# continue
# ax.plot(c[j], y, ms[count], c=c, ms=ms, markeredgecolor='None', label='%s,%s' %(ellabels[i], ellabels[j]), **kwargs)
count=-1
for i in range(4):
for j in range(i+1, 4):
count+=1
k, l=tuple(set(range(4))-set([i, j]))
barr=numpy.array([numpy.logical_not(b[k]|b[l]) for b in cb]) #numpy.logical_xor(b[i], b[j])&
if not numpy.any(barr):
continue
cmps=comps[barr]
inds=numpy.argsort(cmps[:, j])
cmps=cmps[inds]
cols=qtemp.rgb_comp(cmps)
ys=fom[barr][inds]
for count2, (c, col, y) in enumerate(zip(cmps, cols, ys)):
if count2==len(ys)//2:
ax.plot(c[j], y, marker=ms[count], c=col, markeredgecolor=col, label='%s,%s' %(ellabels[i], ellabels[j]), **kwargs)
else:
ax.plot(c[j], y, marker=ms[count], c=col, markeredgecolor=col, **kwargs)
#ax.plot(c[j], y, marker=ms[count], c=col, markeredgecolor='None')
for count3, (c1, col1, y1, c2, col2, y2) in enumerate(zip(cmps[:-1], cols[:-1], ys[:-1], cmps[1:], cols[1:], ys[1:])):
col=numpy.array([col1, col2]).mean(axis=0)
ax.plot([c1[j], c2[j]], [y1, y2], '-', c=col, **kwargs)
try:
ax.legend(loc=legloc).draggable()
except:
pass
def __init__(self, comps, parent=None, title='', folderpath=None):
super(dialog, self).__init__(parent)
plotw = plotwidget(self)
ax = plotw.axes
inds = np.where(comps[:, -1] == 0.)[0]
comps = comps[inds, :-1]
#print comps.shape
stpquat = QuaternaryPlot(ax)
ax.cla()
cols = stpquat.rgb_comp(comps)
#stpquat.scatter(comps, c=cols, s=100, edgecolors='none')
#stpquat.label()
self.tf = ternaryfaces_shells(ax, nintervals=intervs)
self.tf.label()
self.tf.scatter(comps, cols, skipinds=[0, 1, 2, 3], s='patch')
#only select comps
plotw2 = plotwidget(self, projection3d=True)
ax = plotw2.axes
#unary
stpquat = QuaternaryPlot(ax)
stpquat.scatter(comps, c=cols, s=100, edgecolors='none')
stpquat.label()
QObject.connect(plotw, SIGNAL("genericclickonplot"), self.plotclick)
QObject.connect(plotw2, SIGNAL("genericclickonplot"), self.plotclick)
mainlayout = QGridLayout()
mainlayout.addWidget(plotw, 0, 0)
mainlayout.addWidget(plotw2, 1, 0)
self.setLayout(mainlayout)
def __init__(self, comps, parent=None, title='', folderpath=None):
super(dialog, self).__init__(parent)
plotw=plotwidget(self)
ax=plotw.axes
inds=np.where(comps[:, -1]==0.)[0]
comps=comps[inds, :-1]
#print comps.shape
stpquat=QuaternaryPlot(ax)
ax.cla()
cols=stpquat.rgb_comp(comps)
#stpquat.scatter(comps, c=cols, s=100, edgecolors='none')
#stpquat.label()
self.tf=ternaryfaces_shells(ax, nintervals=intervs)
self.tf.label()
self.tf.scatter(comps, cols, skipinds=[0, 1, 2, 3], s='patch')
#only select comps
plotw2=plotwidget(self, projection3d=True)
ax=plotw2.axes
#unary
stpquat=QuaternaryPlot(ax)
stpquat.scatter(comps, c=cols, s=100, edgecolors='none')
stpquat.label()
QObject.connect(plotw, SIGNAL("genericclickonplot"), self.plotclick)
QObject.connect(plotw2, SIGNAL("genericclickonplot"), self.plotclick)
mainlayout=QGridLayout()
mainlayout.addWidget(plotw, 0, 0)
mainlayout.addWidget(plotw2, 1, 0)
self.setLayout(mainlayout)
def plotbinarylines_axandinset(ellabels=['A', 'B', 'C', 'D'], fig=None, mainax=[.3, .12, .6, .83], insetax=[0, .7, .2, .3], numcomppts=21, view_azim=-159, view_elev=30, **kwargs):
if fig is None:
fig=pylab.figure(figsize=(8, 5))
ax=fig.add_axes(mainax)
ax2=fig.add_axes(insetax, projection='3d')
stpq=QuaternaryPlot(ax2, ellabels=ellabels)
comppairs=[]
a=numpy.linspace(0, 1, 21)
count=-1
for i in range(4):
for j in range(i+1, 4):
count+=1
b=numpy.zeros((numcomppts, 4), dtype='float64')
b[:, i]=a
b[:, j]=1.-a
comppairs+=[(c1, c2) for c1, c2 in zip(b[:-1], b[1:])]
for (c1, c2) in comppairs:
stpq.line(c1, c2, fmt='-', c=stpq.rgb_comp([(c1+c2)/2.])[0], **kwargs)
stpq.set_projection(azim=view_azim, elev=view_elev)
stpq.label()
return ax, ax2
dropd[k]=numpy.array(dropd[k]) f.close() dropd['compositions']=numpy.array([dropd[elkey] for elkey in elkeys]).T comps=numpy.array([dropd[elkey] for elkey in elkeys]).T gridi=30 comps30=[(a*1./gridi, b*1./gridi, c*1./gridi, (gridi-a-b-c)*1./gridi) for a in numpy.arange(0,1+gridi) for b in numpy.arange(0,1+gridi-a) for c in numpy.arange(0,1+gridi-a-b)] pylab.figure() #axq=pylab.subplot(111) stpq=QuaternaryPlot(111, ellabels=ellabels) cols=stpq.rgb_comp(comps30) stpq.plotbycolor(comps30, cols, marker='o', markersize=3, alpha=1) stpq.set_projection(azim=view_azim, elev=view_elev) pylab.savefig(os.path.join(savefolder, 'QuatPointsAll.png')) pylab.savefig(os.path.join(savefolder, 'QuatPointsAll.eps')) pylab.figure() #axq=pylab.subplot(111) stpqp=QuaternaryPlot(111, ellabels=ellabels)
import pylab, numpy, copy, itertools
from myquaternaryutility import QuaternaryPlot
from mpl_toolkits.mplot3d.art3d import Poly3DCollection
def samesside(p,q,a,b):
cp1=numpy.cross(b-a,p-a)
cp2=numpy.cross(b-a,q-a)
return numpy.dot(cp1,cp2)>0.
def intriangle(p, trianglepoints):
return not (False in [samesside(p,*triperm) for triperm in itertools.permutations(trianglepoints)])
q=QuaternaryPlot(111)
#define these to be modified for each end member
z=numpy.zeros(4, dtype='float64')
ctr3=numpy.ones(4, dtype='float64')/3.
endmembers=[]
lineendpairs=[]
#iterate over 4 end members and draw a line from there to center of opposing face, e.g. (0,.33,.33,.33)
for i in range(4):
a=copy.copy(z)
a[i]=1.
b=copy.copy(ctr3)
b[i]=0.
q.line(a, b, fmt='b-')
q.scatter([b], c='b', s=15)
endmembers+=[a]
lineendpairs+=[[a, b]]
#convert the end members and pairs of endpts to cartesian
# Data for uniform Point-Distribution
compsint = [[b, c, (intervs - a - b - c), a] for a in np.arange(0, intervs + 1)[::-1] for b in
np.arange(0, intervs + 1 - a) for c in np.arange(0, intervs + 1 - a - b)][::-1]
print len(compsint)
comps = np.float32(compsint) / intervs
# Declaration of the figure with the given number of columns and rows
fig, axis = plt.subplots(nrows=nrows, ncols=ncols, sharex=True, sharey=True)
# Iteration over every axis where the data is used to plot the ternary_shells
points_list = []
for i in range(0, nrows, 1):
for j in range(0, ncols, 1):
# Get the object QuaternaryPlot
stpquat = QuaternaryPlot()
cols = stpquat.rgb_comp(comps)
tf = ternaryfaces_shells(axis[i][j], ellabels, nintervals=intervs)
tf.label()
#Saves all tthe picked data inside a list for the color changing
points_list.append(tf.scatter(comps, cols, skipinds=[0, 1, 2, 3], s=None))
# Pick event for changing color of the picked Data
def onpick(event):
event.artist._facecolors[event.ind, :] = (1, 0, 0, 1)
fig.canvas.draw()
# A Press event executed on mouse-clicks
# It takes the clicked coordinates and turns them into the comp coordinates
# Closes the program after reaching the number of measurments
rgb_cmy=lambda a:1.-a
rgb_cmyk=lambda a:rgb_cmy(cmy_cmyk(a))
return rgb_cmyk(cmp)
fig=pylab.figure()
ax=pylab.subplot(111)
ax.set_aspect(1)
for d in dlist:
mark=marks[codeset.index(d['code'])]
col=rgb_comp(d['compositions'])
if d['compositions'].sum==0:
pylab.scatter(d['x'], d['y'],color=col,s=14,marker=mark, edgecolor='k')
else:
pylab.scatter(d['x'], d['y'],color=col,s=14,marker=mark, edgecolor='none')
for cd, ma in zip(codeset, marks):
pylab.plot([], [], 'k'+ma, mec='none', label=`cd`)
pylab.legend(loc=6)
sys.path.append(r'D:\Google Drive\Documents\PythonCode\JCAP\PythonCompositionPlots')
from myquaternaryutility import QuaternaryPlot
pylab.figure()
carr=numpy.array([d['compositions'] for d in dlist])
stpq=QuaternaryPlot(111)
stpq.scatter(carr)
pylab.show()
errortime
if SYSTEM==0:
elkeys=['Ni', 'Fe', 'Co', 'Ce']
pl=[]
pl+=['C:/Users/gregoire/Documents/EchemDropRawData/NiFeCoCe/results/20130402NiFeCoCe_Plate1_5500_dlist.dat']
pl+=['C:/Users/gregoire/Documents/EchemDropRawData/NiFeCoCe/results/20130403NiFeCoCe_Plate2_5498_dlist.dat']
pl+=['C:/Users/gregoire/Documents/EchemDropRawData/NiFeCoCe/results/20130403NiFeCoCe_Plate3_4835_dlist.dat']
compend1=numpy.array([.5, .5, .0, .0])
compend2=numpy.array([.27, 0, .27, .46])
critdist=.06
savep='C:/Users/gregoire/Documents/EchemDropRawData/NiFeCoCe/parsedresults/201304NiFeCoCe_compline%.2f_plate123_dlist.dat' %critdist
savep2='C:/Users/gregoire/Documents/EchemDropRawData/NiFeCoCe/parsedresults/201304NiFeCoCe_compline%.2f_linedetails.dat' %critdist
savep3='C:/Users/gregoire/Documents/EchemDropRawData/NiFeCoCe/parsedresults/201304NiFeCoCe_compline%.2f_samples.txt' %critdist
betweenpoints=False
stpq=QuaternaryPlot(111)
platesdlist=[]
plotcomps=[]
lined={}
lined['distfromlin']=[]
lined['lineparameter']=[]
lined['compend1']=compend1
lined['compend2']=compend2
lined['critdist']=critdist
lined['betweenpoints']=betweenpoints
for p in pl:
f=open(p, mode='r')
dlist=pickle.load(f)
f.close()
comps=numpy.array([d['compositions'] for d in dlist])
from quaternary_faces_shells import ternaryfaces_shells from myquaternaryutility import QuaternaryPlot intervs=10 compsint=[[b, c, (intervs-a-b-c), a] for a in numpy.arange(0,intervs+1)[::-1] for b in numpy.arange(0,intervs+1-a) for c in numpy.arange(0,intervs+1-a-b)][::-1] print len(compsint) comps=numpy.float32(compsint)/intervs pylab.figure() stpquat=QuaternaryPlot(111) cols=stpquat.rgb_comp(comps) stpquat.scatter(comps, c=cols, s=1200, edgecolors='none') stpquat.label() pylab.figure() ax=pylab.gca() tf=ternaryfaces_shells(ax, nintervals=intervs) tf.label() #inds_x_y=tf.toCart(comps) tf.scatter(comps, cols, skipinds=[0, 1, 2, 3], s='patch') #pylab.figure(figsize=(12, 4)) #tf.quatscatter(comps, cols, s=200, fontsize=0, azim=72, elev=20, edgecolor='none', outline=True)
def samesside(p, q, a, b):
cp1 = numpy.cross(b - a, p - a)
cp2 = numpy.cross(b - a, q - a)
return numpy.dot(cp1, cp2) > 0.
def intriangle(p, trianglepoints):
return not (False in [
samesside(p, *triperm)
for triperm in itertools.permutations(trianglepoints)
])
q = QuaternaryPlot(111)
#define these to be modified for each end member
z = numpy.zeros(4, dtype='float64')
ctr3 = numpy.ones(4, dtype='float64') / 3.
endmembers = []
lineendpairs = []
#iterate over 4 end members and draw a line from there to center of opposing face, e.g. (0,.33,.33,.33)
for i in range(4):
a = copy.copy(z)
a[i] = 1.
b = copy.copy(ctr3)
b[i] = 0.
q.line(a, b, fmt='b-')
q.scatter([b], c='b', s=15)
endmembers += [a]
import pylab, numpy from myquaternaryutility import QuaternaryPlot q=QuaternaryPlot(111) #t=numpy.linspace(0,1.,5) #comps=[[a,b,c,d] for a in t for b in t for c in t for d in t if a+b+c+d==1.] #comps=numpy.float32(comps) t=numpy.linspace(0,1.,30) comps=[[a,b,1.-a-b-(2.*a**2+b),2.*a**2+b] for a in t for b in t[:10] if a+b+(2.*a**2+b)<=1.] comps=numpy.float32(comps) x, y, z=q.toCart(comps) q.scatter(comps,c=comps[:,3]) #q.ax.scatter(x, y, z, c=z) q.plotabcprojection(comps, c=(.4, .4, .4)) q.label(ha='center', va='center', fontsize=16) q.set_projection(azim=-17, elev=-6) pylab.show()
def quatplot3D(self, quatcomps, c, skipinds=range(4), azim=-60, elev=30, alphaall=.2, alphashell=1., fontsize=14, outline=True, **kwargs):
numsubs=int(self.nint//4)+1
quatcomps=numpy.int32(numpy.round(quatcomps*self.nint))
for nshell in range(int(self.nint//4)+int(self.nint%4>0)):
ba=((quatcomps==nshell).sum(axis=1, dtype='int32')>0)&((quatcomps>=nshell).prod(axis=1, dtype='int32')>0)
shellcomps=quatcomps[ba]
shellc=c[ba]
q=QuaternaryPlot((1, numsubs, nshell+1), outline=outline)
if alphaall>0:
q.plot3D(quatcomps*1./self.nint,c, alpha=alphaall, **kwargs)
if alphashell>0:
q.plot3D(shellcomps*1./self.nint,shellc, alpha=alphashell, **kwargs)
if fontsize>0:
q.label(ha='center', va='center', fontsize=fontsize)
q.set_projection(azim=azim, elev=elev)
if self.nint%4==0: #single point with no frame
ba=(quatcomps==self.nint//4).prod(axis=1, dtype='int32')>0
if True in ba:
shellcomps=quatcomps[ba]#only 1 comp but might be duplicated
shellc=c[ba]
q=QuaternaryPlot((1, numsubs, numsubs), outline=outline)
q.plot3D(quatcomps*1./self.nint,c, alpha=alphaall, **kwargs)
q.plot3D(shellcomps*1./self.nint,shellc, alpha=alphashell, **kwargs)
if fontsize>0:
q.label(ha='center', va='center', fontsize=fontsize)
q.set_projection(azim=azim, elev=elev)
import pylab, numpy
from myquaternaryutility import QuaternaryPlot
q = QuaternaryPlot(211)
q2 = QuaternaryPlot(212)
#t=numpy.linspace(0,1.,5)
#comps=[[a,b,c,d] for a in t for b in t for c in t for d in t if a+b+c+d==1.]
#comps=numpy.float32(comps)
t = numpy.linspace(0, 1., 30)
comps = [[a, b, 1. - a - b - (2. * a**2 + b), 2. * a**2 + b] for a in t
for b in t[:10] if a + b + (2. * a**2 + b) <= 1.]
comps = numpy.float32(comps)
examplenum = 0
if examplenum == 0:
compvert2 = numpy.array([0.125, .125, .6, .15])
compvert0 = numpy.array([.2, .2, 0., .6])
compvert1 = numpy.array([1., 0., 0., 0])
critdist = .04
withintriangle = False
elif examplenum == 1:
compvert2 = numpy.array([0.125, .125, .6, .15])
compvert0 = numpy.array([.2, .2, 0., .6])
compvert1 = numpy.array([1., 0., 0., 0])
critdist = .04
withintriangle = True
q.scatter(comps, c=comps[:, 3])
def quatplot3D(self,
quatcomps,
c,
skipinds=range(4),
azim=-60,
elev=30,
alphaall=.2,
alphashell=1.,
fontsize=14,
outline=True,
**kwargs):
numsubs = int(self.nint // 4) + 1
quatcomps = numpy.int32(numpy.round(quatcomps * self.nint))
for nshell in range(int(self.nint // 4) + int(self.nint % 4 > 0)):
ba = ((quatcomps == nshell).sum(axis=1, dtype='int32') > 0) & (
(quatcomps >= nshell).prod(axis=1, dtype='int32') > 0)
shellcomps = quatcomps[ba]
shellc = c[ba]
q = QuaternaryPlot((1, numsubs, nshell + 1), outline=outline)
if alphaall > 0:
q.plot3D(quatcomps * 1. / self.nint,
c,
alpha=alphaall,
**kwargs)
if alphashell > 0:
q.plot3D(shellcomps * 1. / self.nint,
shellc,
alpha=alphashell,
**kwargs)
if fontsize > 0:
q.label(ha='center', va='center', fontsize=fontsize)
q.set_projection(azim=azim, elev=elev)
if self.nint % 4 == 0: #single point with no frame
ba = (quatcomps == self.nint // 4).prod(axis=1, dtype='int32') > 0
if True in ba:
shellcomps = quatcomps[
ba] #only 1 comp but might be duplicated
shellc = c[ba]
q = QuaternaryPlot((1, numsubs, numsubs), outline=outline)
q.plot3D(quatcomps * 1. / self.nint,
c,
alpha=alphaall,
**kwargs)
q.plot3D(shellcomps * 1. / self.nint,
shellc,
alpha=alphashell,
**kwargs)
if fontsize > 0:
q.label(ha='center', va='center', fontsize=fontsize)
q.set_projection(azim=azim, elev=elev)
def plot(self):
s = 25
self.plotw_tern.axes.cla()
self.plotw_quat.axes.cla()
self.cbax_quat.cla()
self.cbax_tern.cla()
fom = self.fom
azim = -159.0
elev = 30.0
vstr = str(self.azimelevLineEdit.text()).strip()
if "," in vstr:
a, b, c = vstr.partition(",")
try:
a = myeval(a.strip())
c = myeval(c.strip())
self.vmin = a
self.vmax = c
except:
pass
if self.revcmapCheckBox.isChecked():
cmap = cm.jet_r
else:
cmap = cm.jet
clip = True
skipoutofrange = [False, False]
self.vmin = fom.min()
self.vmax = fom.max()
vstr = str(self.vminmaxLineEdit.text()).strip()
if "," in vstr:
a, b, c = vstr.partition(",")
try:
a = myeval(a.strip())
c = myeval(c.strip())
self.vmin = a
self.vmax = c
for count, (fcn, le) in enumerate(
zip([cmap.set_under, cmap.set_over], [self.belowrangecolLineEdit, self.aboverangecolLineEdit])
):
vstr = str(le.text()).strip()
vstr = vstr.replace('"', "").replace("'", "")
print "^^^", vstr, "none" in vstr or "None" in vstr
if "none" in vstr or "None" in vstr:
skipoutofrange[count] = True
continue
if len(vstr) == 0:
continue
c = col_string(vstr)
try:
fcn(c)
clip = False
except:
print "color entry not understood:", vstr
except:
pass
print "4"
norm = colors.Normalize(vmin=self.vmin, vmax=self.vmax, clip=clip)
print "fom min, max, mean, std:", fom.min(), fom.max(), fom.mean(), fom.std()
comps = self.comps
# comment out this skipoutofrange becuase it could mess up the indexing
# print 'skipoutofrange', skipoutofrange
# print len(fom)
# if skipoutofrange[0]:
# inds=numpy.where(fom>=self.vmin)
# fom=fom[inds]
# comps=comps[inds]
# print len(fom)
# if skipoutofrange[1]:
# inds=numpy.where(fom<=self.vmax)
# fom=fom[inds]
# comps=comps[inds]
# print len(fom)
if numpy.any(fom > self.vmax):
if numpy.any(fom < self.vmin):
extend = "both"
else:
extend = "max"
elif numpy.any(fom < self.vmin):
extend = "min"
else:
extend = "neither"
print "extend ", extend
i = self.ternskipComboBox.currentIndex()
inds = [j for j in range(4) if j != i][:3]
terncomps = numpy.array([c[inds] / c[inds].sum() for c in comps])
reordercomps = comps[:, inds + [i]]
reorderlabels = [self.ellabels[j] for j in inds + [i]]
fomselect = fom[self.selectinds]
compsselect = comps[self.selectinds]
reordercompsselect = reordercomps[self.selectinds]
fomlabel = self.dataclass.fomlabel
self.stackedternplotdict = dict(
[
("comps", reordercomps),
("fom", fom),
("cmap", cmap),
("norm", norm),
("ellabels", reorderlabels),
("fomlabel", fomlabel),
("extend", extend),
]
)
self.echem30_all.clearandplot(self.stackedternplotdict, cb=True, ellabels=reorderlabels)
print len(fomselect), " samples selected"
if len(fomselect) > 0:
self.stackedternplotdictselect = dict(
[
("comps", reordercompsselect),
("fom", fomselect),
("cmap", cmap),
("norm", norm),
("ellabels", reorderlabels),
("fomlabel", fomlabel),
("extend", extend),
]
)
self.echem30_select.clearandplot(self.stackedternplotdictselect, cb=True, ellabels=reorderlabels)
quat = QuaternaryPlot(self.plotw_quat.axes, ellabels=self.ellabels, offset=0)
quat.label()
quat.scatter(
compsselect, c=fomselect, s=s, cmap=cmap, norm=norm, edgecolor="none"
) # vmin=self.vmin, vmax=self.vmax,
cb = self.plotw_quat.fig.colorbar(
quat.mappable, cax=self.cbax_quat, extend=extend, format=autocolorbarformat((fom.min(), fom.max()))
)
cb.set_label(fomlabel, fontsize=18)
quat.set_projection(azim=azim, elev=elev)
if self.calctype == 0:
quat.line(self.compverts[0], self.compverts[1])
self.quatcalc.plotfomalonglineparameter(
self.plotw_tern.axes,
self.lineparameter,
fomselect,
compend1=self.compverts[0],
compend2=self.compverts[1],
lineparticks=numpy.linspace(0, 1, 4),
ls="none",
marker=".",
)
elif self.calctype == 1:
self.quatcalc.plotfominselectedplane(
self.plotw_tern.axes,
self.xyparr,
fomselect,
xyp_verts=self.xyp_verts,
vertcomps_labels=[self.compverts[0], self.compverts[1], self.compverts[2]],
s=20,
edgecolor="none",
cmap=cmap,
norm=norm,
)
quat.line(self.compverts[0], self.compverts[1])
quat.line(self.compverts[0], self.compverts[2])
quat.line(self.compverts[2], self.compverts[1])
cb = self.plotw_tern.fig.colorbar(
quat.mappable, cax=self.cbax_tern, extend=extend, format=autocolorbarformat((fom.min(), fom.max()))
)
cb.set_label(fomlabel, fontsize=18)
self.plotw_quat.axes.mouse_init()
self.plotw_quat.axes.set_axis_off()
self.plotw_tern.fig.canvas.draw()
self.plotw_quat.fig.canvas.draw()
def __init__(self, parent, echem30_select, echem30_all, title="", folderpath=None, ellabels=["A", "B", "C", "D"]):
super(quatsliceDialog, self).__init__(parent)
self.parent = parent
self.echem30_select = echem30_select
self.echem30_all = echem30_all
self.ellabels = ellabels
self.dataclass = fomdatapreset()
self.plotw_quat = plotwidget(self, projection3d=True)
self.plotw_tern = plotwidget(self)
axrect = [0.85, 0.1, 0.04, 0.8]
self.plotw_tern.fig.subplots_adjust(left=0.1, right=axrect[0] - 0.08)
self.cbax_tern = self.plotw_tern.fig.add_axes(axrect)
QObject.connect(self.plotw_tern, SIGNAL("genericclickonplot"), self.ternclickprocess)
self.plotw_quat.fig.subplots_adjust(left=0, right=axrect[0] - 0.08)
self.cbax_quat = self.plotw_quat.fig.add_axes(axrect)
ternskipComboBoxLabel = QLabel()
ternskipComboBoxLabel.setText("Exclude for ternary:")
self.ternskipComboBox = QComboBox()
for i, l in enumerate(["A", "B", "C", "D"]):
self.ternskipComboBox.insertItem(i, l)
self.ternskipComboBox.setCurrentIndex(i)
ternskiplayout = QHBoxLayout()
ternskiplayout.addWidget(ternskipComboBoxLabel)
ternskiplayout.addWidget(self.ternskipComboBox)
self.compcutComboBox = QComboBox()
for i, nam in enumerate(["1-D (pseudobinary)", "2-D (pseudoternnary)"]):
self.compcutComboBox.insertItem(i, nam)
self.compcutComboBox.setCurrentIndex(0)
self.systemsComboBox = QComboBox()
self.systemsinds = [-1, 0]
self.systemsComboBox.insertItem(999, "select files")
self.systemsComboBox.insertItem(999, "update style")
for ind, nam in self.dataclass.systemoptions:
self.systemsComboBox.insertItem(999, nam)
self.systemsinds += [ind]
self.systemsComboBox.setCurrentIndex(0)
sl = ["0.", "0.", "1.", "0.", "0.", "0."]
self.complineeditlist = []
for i in range(3):
self.complineeditlist += [QLineEdit()]
self.complineeditlist[-1].setText(", ".join(sl[2 - i : 2 - i + 4]))
compLabel = QLabel()
compLabel.setText("Composition points")
folderButton = QPushButton()
folderButton.setText("select\nfolder")
QObject.connect(folderButton, SIGNAL("pressed()"), self.selectfolder)
plotButton = QPushButton()
plotButton.setText("update\nfigures")
QObject.connect(plotButton, SIGNAL("pressed()"), self.calcandplot)
saveButton = QPushButton()
saveButton.setText("Save figs\n+ Samples")
QObject.connect(saveButton, SIGNAL("pressed()"), self.save)
templab = QLabel()
templab.setText("Crit Comp. Dist")
self.critdistSpinBox = QDoubleSpinBox()
self.critdistSpinBox.setDecimals(3)
critdistlayout = QHBoxLayout()
critdistlayout.addWidget(templab)
critdistlayout.addWidget(self.critdistSpinBox)
self.compboundCheckBox = QCheckBox()
self.compboundCheckBox.setText("restrict composition\nselection boundaries")
self.invertCheckBox = QCheckBox()
self.invertCheckBox.setText("invert selection")
self.revcmapCheckBox = QCheckBox()
self.revcmapCheckBox.setText("reverse cmap?")
templab = QLabel()
templab.setText("min,max colorbar")
self.vminmaxLineEdit = QLineEdit()
vminmaxlayout = QVBoxLayout()
vminmaxlayout.addWidget(templab)
vminmaxlayout.addWidget(self.vminmaxLineEdit)
templab = QLabel()
templab.setText("azim,elev tetr.")
self.azimelevLineEdit = QLineEdit()
azimelevlayout = QVBoxLayout()
azimelevlayout.addWidget(templab)
azimelevlayout.addWidget(self.azimelevLineEdit)
self.azimelevLineEdit.setText("-159,30")
templab = QLabel()
templab.setText('below,above range colors:\nEnter a char,0-1 gray,tuple,\n"None" for ignore')
self.aboverangecolLineEdit = QLineEdit()
self.aboverangecolLineEdit.setText("k")
self.belowrangecolLineEdit = QLineEdit()
self.belowrangecolLineEdit.setText("0.9")
outrangecollayout = QGridLayout()
outrangecollayout.addWidget(templab, 0, 0, 2, 1)
outrangecollayout.addWidget(self.belowrangecolLineEdit, 0, 1)
outrangecollayout.addWidget(self.aboverangecolLineEdit, 1, 1)
templab = QLabel()
templab.setText("FOM shift:")
self.fomshiftSpinBox = QDoubleSpinBox()
self.fomshiftSpinBox.setDecimals(3)
fomshiftlayout = QHBoxLayout()
fomshiftlayout.addWidget(templab)
fomshiftlayout.addWidget(self.fomshiftSpinBox)
templab = QLabel()
templab.setText("FOM scaling:")
self.fomscaleSpinBox = QDoubleSpinBox()
self.fomscaleSpinBox.setMaximum(1000.0)
self.fomscaleSpinBox.setMinimum(-1000.0)
self.fomscaleSpinBox.setValue(1.0)
fomscalelayout = QHBoxLayout()
fomscalelayout.addWidget(templab)
fomscalelayout.addWidget(self.fomscaleSpinBox)
mainlayout = QGridLayout()
ctrllayout = QGridLayout()
ctrllayout.addWidget(plotButton, 0, 0)
ctrllayout.addWidget(self.compcutComboBox, 0, 1)
ctrllayout.addWidget(saveButton, 0, 2)
ctrllayout.addWidget(self.systemsComboBox, 0, 3)
ctrllayout.addWidget(compLabel, 1, 0)
ctrllayout.addWidget(self.complineeditlist[0], 1, 1)
ctrllayout.addWidget(self.complineeditlist[1], 1, 2)
ctrllayout.addWidget(self.complineeditlist[2], 1, 3)
ctrllayout.addWidget(self.compboundCheckBox, 2, 0)
ctrllayout.addWidget(self.invertCheckBox, 2, 1)
ctrllayout.addLayout(critdistlayout, 2, 2, 1, 2)
ctrllayout.addWidget(self.revcmapCheckBox, 3, 0)
ctrllayout.addLayout(vminmaxlayout, 3, 1)
ctrllayout.addLayout(outrangecollayout, 3, 2, 1, 2)
ctrllayout.addLayout(ternskiplayout, 4, 0)
# ctrllayout.addLayout(fomshiftlayout, 4, 1)
# ctrllayout.addLayout(fomscalelayout, 4, 2)
ctrllayout.addLayout(azimelevlayout, 4, 1, 1, 2)
mainlayout.addLayout(ctrllayout, 0, 0, 2, 1)
mainlayout.addWidget(self.plotw_quat, 3, 0)
mainlayout.addWidget(self.plotw_tern, 4, 0)
# mainlayout.addWidget(self.plotw_30select, 0, 1, 2, 8)
# mainlayout.addWidget(self.plotw_30all, 2, 1, 2, 8)
self.setLayout(mainlayout)
self.folderpath = folderpath
self.ternskipComboBox.clear()
for i, l in enumerate(self.ellabels):
self.ternskipComboBox.insertItem(i, l)
self.ternskipComboBox.setCurrentIndex(3)
self.selectsystem = None
self.quatcalc = QuaternaryPlot(111, ellabels=self.ellabels)
self.resize(600, 850)
class quatsliceDialog(QDialog):
def __init__(self, parent, echem30_select, echem30_all, title="", folderpath=None, ellabels=["A", "B", "C", "D"]):
super(quatsliceDialog, self).__init__(parent)
self.parent = parent
self.echem30_select = echem30_select
self.echem30_all = echem30_all
self.ellabels = ellabels
self.dataclass = fomdatapreset()
self.plotw_quat = plotwidget(self, projection3d=True)
self.plotw_tern = plotwidget(self)
axrect = [0.85, 0.1, 0.04, 0.8]
self.plotw_tern.fig.subplots_adjust(left=0.1, right=axrect[0] - 0.08)
self.cbax_tern = self.plotw_tern.fig.add_axes(axrect)
QObject.connect(self.plotw_tern, SIGNAL("genericclickonplot"), self.ternclickprocess)
self.plotw_quat.fig.subplots_adjust(left=0, right=axrect[0] - 0.08)
self.cbax_quat = self.plotw_quat.fig.add_axes(axrect)
ternskipComboBoxLabel = QLabel()
ternskipComboBoxLabel.setText("Exclude for ternary:")
self.ternskipComboBox = QComboBox()
for i, l in enumerate(["A", "B", "C", "D"]):
self.ternskipComboBox.insertItem(i, l)
self.ternskipComboBox.setCurrentIndex(i)
ternskiplayout = QHBoxLayout()
ternskiplayout.addWidget(ternskipComboBoxLabel)
ternskiplayout.addWidget(self.ternskipComboBox)
self.compcutComboBox = QComboBox()
for i, nam in enumerate(["1-D (pseudobinary)", "2-D (pseudoternnary)"]):
self.compcutComboBox.insertItem(i, nam)
self.compcutComboBox.setCurrentIndex(0)
self.systemsComboBox = QComboBox()
self.systemsinds = [-1, 0]
self.systemsComboBox.insertItem(999, "select files")
self.systemsComboBox.insertItem(999, "update style")
for ind, nam in self.dataclass.systemoptions:
self.systemsComboBox.insertItem(999, nam)
self.systemsinds += [ind]
self.systemsComboBox.setCurrentIndex(0)
sl = ["0.", "0.", "1.", "0.", "0.", "0."]
self.complineeditlist = []
for i in range(3):
self.complineeditlist += [QLineEdit()]
self.complineeditlist[-1].setText(", ".join(sl[2 - i : 2 - i + 4]))
compLabel = QLabel()
compLabel.setText("Composition points")
folderButton = QPushButton()
folderButton.setText("select\nfolder")
QObject.connect(folderButton, SIGNAL("pressed()"), self.selectfolder)
plotButton = QPushButton()
plotButton.setText("update\nfigures")
QObject.connect(plotButton, SIGNAL("pressed()"), self.calcandplot)
saveButton = QPushButton()
saveButton.setText("Save figs\n+ Samples")
QObject.connect(saveButton, SIGNAL("pressed()"), self.save)
templab = QLabel()
templab.setText("Crit Comp. Dist")
self.critdistSpinBox = QDoubleSpinBox()
self.critdistSpinBox.setDecimals(3)
critdistlayout = QHBoxLayout()
critdistlayout.addWidget(templab)
critdistlayout.addWidget(self.critdistSpinBox)
self.compboundCheckBox = QCheckBox()
self.compboundCheckBox.setText("restrict composition\nselection boundaries")
self.invertCheckBox = QCheckBox()
self.invertCheckBox.setText("invert selection")
self.revcmapCheckBox = QCheckBox()
self.revcmapCheckBox.setText("reverse cmap?")
templab = QLabel()
templab.setText("min,max colorbar")
self.vminmaxLineEdit = QLineEdit()
vminmaxlayout = QVBoxLayout()
vminmaxlayout.addWidget(templab)
vminmaxlayout.addWidget(self.vminmaxLineEdit)
templab = QLabel()
templab.setText("azim,elev tetr.")
self.azimelevLineEdit = QLineEdit()
azimelevlayout = QVBoxLayout()
azimelevlayout.addWidget(templab)
azimelevlayout.addWidget(self.azimelevLineEdit)
self.azimelevLineEdit.setText("-159,30")
templab = QLabel()
templab.setText('below,above range colors:\nEnter a char,0-1 gray,tuple,\n"None" for ignore')
self.aboverangecolLineEdit = QLineEdit()
self.aboverangecolLineEdit.setText("k")
self.belowrangecolLineEdit = QLineEdit()
self.belowrangecolLineEdit.setText("0.9")
outrangecollayout = QGridLayout()
outrangecollayout.addWidget(templab, 0, 0, 2, 1)
outrangecollayout.addWidget(self.belowrangecolLineEdit, 0, 1)
outrangecollayout.addWidget(self.aboverangecolLineEdit, 1, 1)
templab = QLabel()
templab.setText("FOM shift:")
self.fomshiftSpinBox = QDoubleSpinBox()
self.fomshiftSpinBox.setDecimals(3)
fomshiftlayout = QHBoxLayout()
fomshiftlayout.addWidget(templab)
fomshiftlayout.addWidget(self.fomshiftSpinBox)
templab = QLabel()
templab.setText("FOM scaling:")
self.fomscaleSpinBox = QDoubleSpinBox()
self.fomscaleSpinBox.setMaximum(1000.0)
self.fomscaleSpinBox.setMinimum(-1000.0)
self.fomscaleSpinBox.setValue(1.0)
fomscalelayout = QHBoxLayout()
fomscalelayout.addWidget(templab)
fomscalelayout.addWidget(self.fomscaleSpinBox)
mainlayout = QGridLayout()
ctrllayout = QGridLayout()
ctrllayout.addWidget(plotButton, 0, 0)
ctrllayout.addWidget(self.compcutComboBox, 0, 1)
ctrllayout.addWidget(saveButton, 0, 2)
ctrllayout.addWidget(self.systemsComboBox, 0, 3)
ctrllayout.addWidget(compLabel, 1, 0)
ctrllayout.addWidget(self.complineeditlist[0], 1, 1)
ctrllayout.addWidget(self.complineeditlist[1], 1, 2)
ctrllayout.addWidget(self.complineeditlist[2], 1, 3)
ctrllayout.addWidget(self.compboundCheckBox, 2, 0)
ctrllayout.addWidget(self.invertCheckBox, 2, 1)
ctrllayout.addLayout(critdistlayout, 2, 2, 1, 2)
ctrllayout.addWidget(self.revcmapCheckBox, 3, 0)
ctrllayout.addLayout(vminmaxlayout, 3, 1)
ctrllayout.addLayout(outrangecollayout, 3, 2, 1, 2)
ctrllayout.addLayout(ternskiplayout, 4, 0)
# ctrllayout.addLayout(fomshiftlayout, 4, 1)
# ctrllayout.addLayout(fomscalelayout, 4, 2)
ctrllayout.addLayout(azimelevlayout, 4, 1, 1, 2)
mainlayout.addLayout(ctrllayout, 0, 0, 2, 1)
mainlayout.addWidget(self.plotw_quat, 3, 0)
mainlayout.addWidget(self.plotw_tern, 4, 0)
# mainlayout.addWidget(self.plotw_30select, 0, 1, 2, 8)
# mainlayout.addWidget(self.plotw_30all, 2, 1, 2, 8)
self.setLayout(mainlayout)
self.folderpath = folderpath
self.ternskipComboBox.clear()
for i, l in enumerate(self.ellabels):
self.ternskipComboBox.insertItem(i, l)
self.ternskipComboBox.setCurrentIndex(3)
self.selectsystem = None
self.quatcalc = QuaternaryPlot(111, ellabels=self.ellabels)
self.resize(600, 850)
def selectfolder(self, folder=None):
if folder is None:
self.folderpath = mygetdir(self, markstr="for saving")
else:
self.folderpath = folder
def calcandplot(self):
print "0"
i = self.systemsinds[self.systemsComboBox.currentIndex()]
if self.selectsystem is None or i == -1 or (i != 0 and i != self.selectsystem):
self.selectsystem = i
self.dataclass.readdata(self.selectsystem, qparent=self)
self.comps = self.dataclass.compsall
self.fom = self.dataclass.fomall
self.smp = self.dataclass.smpsall
self.code = self.dataclass.codeall
# self.codeorig=self.dataclass.codeorig
# self.smpsorig=self.dataclass.smpsorig
self.ellabels = self.dataclass.ellabels
self.vminmaxLineEdit.setText(` self.dataclass.vmin ` + "," + ` self.dataclass.vmax `)
for le, v in zip(
[self.belowrangecolLineEdit, self.aboverangecolLineEdit],
[self.dataclass.belowrangecolstr, self.dataclass.aboverangecolstr],
):
le.setText(` v `)
i0 = self.ternskipComboBox.currentIndex()
self.ternskipComboBox.clear()
for i, l in enumerate(self.ellabels):
self.ternskipComboBox.insertItem(i, l)
self.ternskipComboBox.setCurrentIndex(i0)
self.calctype = self.compcutComboBox.currentIndex()
critdist = self.critdistSpinBox.value()
print "1"
self.compverts = []
for i in range(2 + self.calctype):
sl = str(self.complineeditlist[i].text()).split(",")
c = [myeval(s.strip()) for s in sl]
c = c[:4]
c += [0.0] * (4 - len(c))
c = numpy.float64(c)
c /= c.sum()
self.compverts += [c]
betweenbool = self.compboundCheckBox.isChecked()
invertbool = self.invertCheckBox.isChecked()
if self.calctype == 0:
self.selectinds, distfromlin, self.lineparameter = self.quatcalc.filterbydistancefromline(
self.comps,
self.compverts[0],
self.compverts[1],
critdist,
betweenpoints=betweenbool,
invlogic=invertbool,
returnall=True,
)
self.lineparameter = self.lineparameter[self.selectinds]
elif self.calctype == 1:
self.selectinds, distfromplane, self.xyparr, self.xyp_verts, intriangle = self.quatcalc.filterbydistancefromplane(
self.comps,
self.compverts[0],
self.compverts[1],
self.compverts[2],
critdist,
withintriangle=betweenbool,
invlogic=invertbool,
returnall=True,
)
self.xyparr = self.xyparr[self.selectinds]
self.selectcomps = self.comps[self.selectinds]
self.plot()
def plot(self):
s = 25
self.plotw_tern.axes.cla()
self.plotw_quat.axes.cla()
self.cbax_quat.cla()
self.cbax_tern.cla()
fom = self.fom
azim = -159.0
elev = 30.0
vstr = str(self.azimelevLineEdit.text()).strip()
if "," in vstr:
a, b, c = vstr.partition(",")
try:
a = myeval(a.strip())
c = myeval(c.strip())
self.vmin = a
self.vmax = c
except:
pass
if self.revcmapCheckBox.isChecked():
cmap = cm.jet_r
else:
cmap = cm.jet
clip = True
skipoutofrange = [False, False]
self.vmin = fom.min()
self.vmax = fom.max()
vstr = str(self.vminmaxLineEdit.text()).strip()
if "," in vstr:
a, b, c = vstr.partition(",")
try:
a = myeval(a.strip())
c = myeval(c.strip())
self.vmin = a
self.vmax = c
for count, (fcn, le) in enumerate(
zip([cmap.set_under, cmap.set_over], [self.belowrangecolLineEdit, self.aboverangecolLineEdit])
):
vstr = str(le.text()).strip()
vstr = vstr.replace('"', "").replace("'", "")
print "^^^", vstr, "none" in vstr or "None" in vstr
if "none" in vstr or "None" in vstr:
skipoutofrange[count] = True
continue
if len(vstr) == 0:
continue
c = col_string(vstr)
try:
fcn(c)
clip = False
except:
print "color entry not understood:", vstr
except:
pass
print "4"
norm = colors.Normalize(vmin=self.vmin, vmax=self.vmax, clip=clip)
print "fom min, max, mean, std:", fom.min(), fom.max(), fom.mean(), fom.std()
comps = self.comps
# comment out this skipoutofrange becuase it could mess up the indexing
# print 'skipoutofrange', skipoutofrange
# print len(fom)
# if skipoutofrange[0]:
# inds=numpy.where(fom>=self.vmin)
# fom=fom[inds]
# comps=comps[inds]
# print len(fom)
# if skipoutofrange[1]:
# inds=numpy.where(fom<=self.vmax)
# fom=fom[inds]
# comps=comps[inds]
# print len(fom)
if numpy.any(fom > self.vmax):
if numpy.any(fom < self.vmin):
extend = "both"
else:
extend = "max"
elif numpy.any(fom < self.vmin):
extend = "min"
else:
extend = "neither"
print "extend ", extend
i = self.ternskipComboBox.currentIndex()
inds = [j for j in range(4) if j != i][:3]
terncomps = numpy.array([c[inds] / c[inds].sum() for c in comps])
reordercomps = comps[:, inds + [i]]
reorderlabels = [self.ellabels[j] for j in inds + [i]]
fomselect = fom[self.selectinds]
compsselect = comps[self.selectinds]
reordercompsselect = reordercomps[self.selectinds]
fomlabel = self.dataclass.fomlabel
self.stackedternplotdict = dict(
[
("comps", reordercomps),
("fom", fom),
("cmap", cmap),
("norm", norm),
("ellabels", reorderlabels),
("fomlabel", fomlabel),
("extend", extend),
]
)
self.echem30_all.clearandplot(self.stackedternplotdict, cb=True, ellabels=reorderlabels)
print len(fomselect), " samples selected"
if len(fomselect) > 0:
self.stackedternplotdictselect = dict(
[
("comps", reordercompsselect),
("fom", fomselect),
("cmap", cmap),
("norm", norm),
("ellabels", reorderlabels),
("fomlabel", fomlabel),
("extend", extend),
]
)
self.echem30_select.clearandplot(self.stackedternplotdictselect, cb=True, ellabels=reorderlabels)
quat = QuaternaryPlot(self.plotw_quat.axes, ellabels=self.ellabels, offset=0)
quat.label()
quat.scatter(
compsselect, c=fomselect, s=s, cmap=cmap, norm=norm, edgecolor="none"
) # vmin=self.vmin, vmax=self.vmax,
cb = self.plotw_quat.fig.colorbar(
quat.mappable, cax=self.cbax_quat, extend=extend, format=autocolorbarformat((fom.min(), fom.max()))
)
cb.set_label(fomlabel, fontsize=18)
quat.set_projection(azim=azim, elev=elev)
if self.calctype == 0:
quat.line(self.compverts[0], self.compverts[1])
self.quatcalc.plotfomalonglineparameter(
self.plotw_tern.axes,
self.lineparameter,
fomselect,
compend1=self.compverts[0],
compend2=self.compverts[1],
lineparticks=numpy.linspace(0, 1, 4),
ls="none",
marker=".",
)
elif self.calctype == 1:
self.quatcalc.plotfominselectedplane(
self.plotw_tern.axes,
self.xyparr,
fomselect,
xyp_verts=self.xyp_verts,
vertcomps_labels=[self.compverts[0], self.compverts[1], self.compverts[2]],
s=20,
edgecolor="none",
cmap=cmap,
norm=norm,
)
quat.line(self.compverts[0], self.compverts[1])
quat.line(self.compverts[0], self.compverts[2])
quat.line(self.compverts[2], self.compverts[1])
cb = self.plotw_tern.fig.colorbar(
quat.mappable, cax=self.cbax_tern, extend=extend, format=autocolorbarformat((fom.min(), fom.max()))
)
cb.set_label(fomlabel, fontsize=18)
self.plotw_quat.axes.mouse_init()
self.plotw_quat.axes.set_axis_off()
self.plotw_tern.fig.canvas.draw()
self.plotw_quat.fig.canvas.draw()
def ternclickprocess(self, coords_button):
xc, yc, button = coords_button
if self.calctype == 0:
clickindsel = numpy.argmin((self.lineparameter - xc) ** 2)
elif self.calctype == 1:
clickindsel = numpy.argmin([(x - xc) ** 2 + (y - yc) ** 2 for x, y in self.xyparr])
cmp = self.selectcomps[clickindsel]
clickind = numpy.argmin([((cmp - c) ** 2).sum() for c in self.comps])
s = self.smp[clickind]
print "clicked composition is ", cmp, " sample is ", s
def save(self):
self.selectfolder(None)
lab = str(self.systemsComboBox.currentText())
lab += "_" + self.dataclass.expstr + "_"
if self.calctype == 0:
lab += "1Dcut_"
elif self.calctype == 1:
lab += "2Dcut_"
pngname = lambda sn: os.path.join(self.folderpath, lab + "_" + sn + ".png")
epsname = lambda sn: os.path.join(self.folderpath, lab + "_" + sn + ".eps")
for fig, saven in zip(
[self.plotw_quat.fig, self.plotw_tern.fig, self.echem30_select.plotw.fig, self.echem30_all.plotw.fig],
["tetr", "projection", "stackedselect", "stackedall"],
):
fig.savefig(pngname(saven))
fig.savefig(epsname(saven))
s = "\n".join([` i ` for i in self.smp[self.selectinds]])
#ax=pylab.subplot(211)
#ax2=pylab.subplot(212)
#pylab.subplots_adjust(left=.03, right=.97, top=.97, bottom=.03, hspace=.01)
ax2=fig.add_subplot(len(dropdl), 1, count+1)
ax2.set_aspect(1)
mapbl=ax2.scatter(x, y, c=fom, s=60, marker='s', edgecolors='none', cmap=cmap, norm=norm)
ax2.set_xlim(x.min()-2, x.max()+2)
ax2.set_ylim(y.min()-2, y.max()+2)
ax2.set_title('plate %d' %(count+1))
#pylab.title('CP1Ess (V) Map')
figquat=pylab.figure(figsize=(8, 8))
stp = QuaternaryPlot(111, minlist=[0., 0., 0., 0.], ellabels=ellabels)
stp.scatter(comp, c=fom, s=pointsize, edgecolors='none', cmap=cmap, norm=norm)
stp.label(ha='center', va='center', fontsize=20)
stp.set_projection(azim=view_azim, elev=view_elev)
caxquat=figquat.add_axes((.83, .3, .04, .4))
cb=pylab.colorbar(stp.mappable, cax=caxquat, extend=extend)
cb.set_label(fomlabel, fontsize=16)
stp.ax.set_title('plate %d' %(count+1))
figquatall+=[figquat]
compsall=numpy.array(compsall)
fomall=numpy.array(fomall)
plateindall=numpy.array(plateindall)
from myquaternaryutility import QuaternaryPlot
gridi = 20
comps_10full = [(a * 1. / gridi, b * 1. / gridi, c * 1. / gridi,
(gridi - a - b - c) * 1. / gridi)
for a in numpy.arange(0, 1 + gridi)
for b in numpy.arange(0, 1 + gridi - a)
for c in numpy.arange(0, 1 + gridi - a - b)]
comps_10full = list(set(comps_10full))
print len(comps_10full)
#comps_10full=[[1., 0, 0, 0], [0, 1, 0, 0], [0, 0, 1, 0], [0, 0, 0, 1]]
comps_10full = numpy.array(comps_10full)
pylab.figure()
stpquat = QuaternaryPlot(111)
cols = stpquat.rgb_comp(comps_10full)
stpquat.scatter(comps_10full, c=cols, s=20, edgecolors='none')
stpquat.label()
pylab.figure()
ax = pylab.gca()
tf = ternaryfaces(ax, nintervals=gridi)
tf.label()
#inds_x_y=tf.toCart(comps_10full)
tf.scatter(comps_10full, cols, skipinds=[0, 1, 2, 3], s='patch')
pylab.show()
##f.close()
#
sys.path.append('C:/Users/Gregoire/Documents/PythonCode/ternaryplot')
from myquaternaryutility import QuaternaryPlot
from quaternary_FOM_stackedtern20 import *
axl, stpl=make20ternaxes()
#
#for d in dlist:
# c=numpy.array([d[el] for el in ['A', 'B', 'C', 'D']])
# if c.sum()>0:
# c/=c.sum()
# d['compositions']=c
#carr=numpy.array([d['compositions'] for d in dlist])
carr=numpy.array(comps)
pylab.figure()
stpq=QuaternaryPlot(111)
#stpq.scatter(carr)
cols=stpq.rgb_comp(carr)
stpq.scatter(carr, c=cols, s=20, edgecolors='none')
scatter_20axes(carr, cols, stpl, s=20, edgecolors='none', cb=False)
stpq.label()
#axl[0].figure.savefig('C:/Users/Gregoire/Documents/CaltechWork/platemaps/nestedtetr/test2.png')
pylab.show()
import pylab, numpy
from myquaternaryutility import QuaternaryPlot
q=QuaternaryPlot(211)
q2=QuaternaryPlot(212)
#t=numpy.linspace(0,1.,5)
#comps=[[a,b,c,d] for a in t for b in t for c in t for d in t if a+b+c+d==1.]
#comps=numpy.float32(comps)
t=numpy.linspace(0,1.,30)
comps=[[a,b,1.-a-b-(2.*a**2+b),2.*a**2+b] for a in t for b in t[:10] if a+b+(2.*a**2+b)<=1.]
comps=numpy.float32(comps)
examplenum=1
if examplenum==0:
compend1=numpy.array([.2, .4, .3, .1])
compend2=numpy.array([.2, 0, .2, .6])
critdist=.1
betweenpoints=False
elif examplenum==1:
compend1=numpy.array([0.1, .1, .8, 0])
compend2=numpy.array([.2, .2, 0., .6])
critdist=.05
betweenpoints=False
elif examplenum==2:
compend1=numpy.array([0.125, .125, .6, .15])
compend2=numpy.array([.2, .2, 0., .6])
critdist=.05
f=open(newpath, mode='w')
f.write('\n'.join(writelines))
f.close()
sys.path.append('C:/Users/Gregoire/Documents/PythonCode/ternaryplot')
from myquaternaryutility import QuaternaryPlot
from myternaryutility import TernaryPlot
for d in dlist:
c=numpy.array([d[el] for el in ['A', 'B', 'C', 'D']])
if c.sum()>0:
c/=c.sum()
d['compositions']=c
carr=numpy.array([d['compositions'] for d in dlist])
stpq=QuaternaryPlot(111)
stpq.scatter(carr)
pylab.figure()
for count, tv in enumerate(comps_d):
stpq=TernaryPlot((4, 2, count+1))
tvnorm=[tvv/tvv.sum() for tvv in tv]
stpq.scatter(tvnorm, marker='.', c='r', edgecolor='none')
if count<5:
ttt=tc
else:
ttt=tc19
stpq.scatter(ttt, marker='.', c='g', edgecolor='none')
pylab.show()
#ax2=pylab.subplot(212)
#pylab.subplots_adjust(left=.03, right=.97, top=.97, bottom=.03, hspace=.01)
ax2=fig.add_subplot(len(dropdl), 1, count+1)
ax2.set_aspect(1)
mapbl=ax2.scatter(x, y, c=fom, s=60, marker='s', edgecolors='none', cmap=cmap, norm=norm)
ax2.set_xlim(x.min()-2, x.max()+2)
ax2.set_ylim(y.min()-2, y.max()+2)
ax2.set_title('plate %d' %(count+1))
#pylab.title('CP1Ess (V) Map')
comp=numpy.array([[dropd['A'][i], dropd['B'][i], dropd['C'][i], dropd['D'][i]] for i in dropinds])
comp=numpy.array([a/a.sum() for a in comp])
figquat=pylab.figure(figsize=(8, 8))
stp = QuaternaryPlot(111, minlist=[0., 0., 0., 0.], ellabels=ellabels)
stp.scatter(comp, c=fom, s=pointsize, edgecolors='none', cmap=cmap, norm=norm)
stp.label(ha='center', va='center', fontsize=16)
stp.set_projection(azim=view_azim, elev=view_elev)
caxquat=figquat.add_axes((.83, .3, .04, .4))
cb=pylab.colorbar(stp.mappable, cax=caxquat, extend=extend)
cb.set_label(fomlabel, fontsize=16)
stp.ax.set_title('plate %d' %(count+1))
compsall+=list(comp)
fomall+=list(fom)
figquatall+=[figquat]
plateindall+=[count]*len(fom)
import operator, copy, os
from quaternary_faces_shells import ternaryfaces_shells
from myquaternaryutility import QuaternaryPlot
intervs = 10
compsint = [[b, c, (intervs - a - b - c), a]
for a in numpy.arange(0, intervs + 1)[::-1]
for b in numpy.arange(0, intervs + 1 - a)
for c in numpy.arange(0, intervs + 1 - a - b)][::-1]
print len(compsint)
comps = numpy.float32(compsint) / intervs
pylab.figure()
stpquat = QuaternaryPlot(111)
cols = stpquat.rgb_comp(comps)
stpquat.scatter(comps, c=cols, s=100, edgecolors='none')
stpquat.label()
pylab.figure()
ax = pylab.gca()
tf = ternaryfaces_shells(ax, nintervals=intervs)
tf.label()
#inds_x_y=tf.toCart(comps)
tf.scatter(comps, cols, skipinds=[0, 1, 2, 3], s='patch')
#pylab.figure(figsize=(12, 4))
#tf.quatscatter(comps, cols, s=200, fontsize=0, azim=72, elev=20, edgecolor='none', outline=True)
#pylab.subplots_adjust(left=0, right=1, bottom=0, top=1, wspace=0, hspace=0)
from myquaternaryutility import QuaternaryPlot
from quaternary_FOM_stackedtern10 import *
ellabels=['Aa', 'Bb', 'Cc', 'Dd']
axl, stpl=make10ternaxes(ellabels=ellabels)
gridi=30
comps_10full=[(a*1./gridi, b*1./gridi, c*1./gridi, (gridi-a-b-c)*1./gridi) for a in numpy.arange(0,1+gridi) for b in numpy.arange(0,1+gridi-a) for c in numpy.arange(0,1+gridi-a-b)]
comps_10full=list(set(comps_10full))
print len(comps_10full)
#plotpoints_cmyk
comps_10full=numpy.array(comps_10full)
pylab.figure()
stpquat=QuaternaryPlot(111, ellabels=ellabels)
cols=stpquat.rgb_comp(comps_10full)
stpquat.scatter(comps_10full, c=cols, s=20, edgecolors='none')
norm=colors.Normalize(vmin=0, vmax=1)
cmap=cm.jet
scatter_10axes(comps_10full, cols, stpl, s=20, edgecolors='none', cb=True, norm=norm, cmap=cmap)
stpquat.label()
pylab.savefig('stackedtern_quat.png')
pylab.figure(axl[0].figure.number)
pylab.savefig('stackedtern.png')
pylab.show()
dropd={}
for l in dr:
for kr in l.keys():
k=kr.strip()
if not k in dropd.keys():
dropd[k]=[]
dropd[k]+=[myeval(l[kr].strip())]
for k in dropd.keys():
dropd[k]=numpy.array(dropd[k])
f.close()
dropd['compositions']=numpy.array([dropd[elkey] for elkey in elkeys]).T
pylab.figure()
#axq=pylab.subplot(111)
stpq=QuaternaryPlot(111, ellabels=ellabels)
comps=numpy.array([dropd[elkey] for elkey in elkeys]).T
selectinds, distfromlin, lineparameter=stpq.filterbydistancefromline(comps, compverts[0], compverts[1], critdist, betweenpoints=betweenbool, invlogic=invertbool, returnall=True)
dropd['lineparameter']=lineparameter
dropd['distfromlin']=distfromlin
lineparameter=lineparameter[selectinds]
cols=stpq.rgb_comp(comps[selectinds])
stpq.plotbycolor(comps[selectinds], cols, marker='o', markersize=5, alpha=.6)
stpq.line(compverts[0], compverts[1], lw=2)
#stpq.scatter(comps[selectinds], pointsize
stpq.set_projection(azim=view_azim, elev=view_elev)
stpq.label(fontsize=20)
import pylab, numpy
from myquaternaryutility import QuaternaryPlot
q = QuaternaryPlot(211)
q2 = QuaternaryPlot(212)
# t=numpy.linspace(0,1.,5)
# comps=[[a,b,c,d] for a in t for b in t for c in t for d in t if a+b+c+d==1.]
# comps=numpy.float32(comps)
t = numpy.linspace(0, 1.0, 30)
comps = [
[a, b, 1.0 - a - b - (2.0 * a ** 2 + b), 2.0 * a ** 2 + b]
for a in t
for b in t[:10]
if a + b + (2.0 * a ** 2 + b) <= 1.0
]
comps = numpy.float32(comps)
examplenum = 0
if examplenum == 0:
compvert2 = numpy.array([0.125, 0.125, 0.6, 0.15])
compvert0 = numpy.array([0.2, 0.2, 0.0, 0.6])
compvert1 = numpy.array([1.0, 0.0, 0.0, 0])
critdist = 0.04
withintriangle = False
elif examplenum == 1:
compvert2 = numpy.array([0.125, 0.125, 0.6, 0.15])
compvert0 = numpy.array([0.2, 0.2, 0.0, 0.6])
compvert1 = numpy.array([1.0, 0.0, 0.0, 0])
import pylab, numpy
from myquaternaryutility import QuaternaryPlot
q = QuaternaryPlot(111)
#t=numpy.linspace(0,1.,5)
#comps=[[a,b,c,d] for a in t for b in t for c in t for d in t if a+b+c+d==1.]
#comps=numpy.float32(comps)
t = numpy.linspace(0, 1., 30)
comps = [[a, b, 1. - a - b - (2. * a**2 + b), 2. * a**2 + b] for a in t
for b in t[:10] if a + b + (2. * a**2 + b) <= 1.]
comps = numpy.float32(comps)
x, y, z = q.toCart(comps)
q.scatter(comps, c=comps[:, 3])
#q.ax.scatter(x, y, z, c=z)
q.plotabcprojection(comps, c=(.4, .4, .4))
q.label(ha='center', va='center', fontsize=16)
q.set_projection(azim=-17, elev=-6)
pylab.show()
f=open(newpath, mode='w')
f.write('\n'.join(writelines))
f.close()
sys.path.append('Z:/Documents/PythonCode/ternaryplot')
from myquaternaryutility import QuaternaryPlot
from myternaryutility import TernaryPlot
for d in dlist:
c=numpy.array([d[el] for el in ['A', 'B', 'C', 'D']])
if c.sum()>0:
c/=c.sum()
d['compositions']=c
carr=numpy.array([d['compositions'] for d in dlist])
stpq=QuaternaryPlot(111)
stpq.scatter(carr)
pylab.figure()
x, y=numpy.array([[d['x'], d['y']] for d in dlist if (d['code'])==0]).T
x2, y2=numpy.array([[d['x'], d['y']] for d in dlist if (d['code'])==100]).T
x3, y3=numpy.array([[d['x'], d['y']] for d in dlist if (d['code'])==200]).T
xn, yn=numpy.array([[d['x'], d['y']] for d in dlist if (d['code']%100)!=0]).T
pylab.plot(x, y, 'rs')
pylab.plot(x2, y2, 'gs')
pylab.plot(x3, y3, 'bs')
pylab.plot(xn, yn, 'k.')
pylab.show()
#
sys.path.append('C:/Users/Gregoire/Documents/PythonCode/ternaryplot')
from myquaternaryutility import QuaternaryPlot
from quaternary_FOM_stackedtern20 import *
axl, stpl = make20ternaxes()
#
#for d in dlist:
# c=numpy.array([d[el] for el in ['A', 'B', 'C', 'D']])
# if c.sum()>0:
# c/=c.sum()
# d['compositions']=c
#carr=numpy.array([d['compositions'] for d in dlist])
carr = numpy.array(comps)
pylab.figure()
stpq = QuaternaryPlot(111)
#stpq.scatter(carr)
cols = stpq.rgb_comp(carr)
stpq.scatter(carr, c=cols, s=20, edgecolors='none')
scatter_20axes(carr, cols, stpl, s=20, edgecolors='none', cb=False)
stpq.label()
axl[0].figure.savefig(
'C:/Users/Gregoire/Documents/CaltechWork/platemaps/nestedtetr/test2.png')
pylab.show()
#ax=pylab.subplot(211)
#ax2=pylab.subplot(212)
#pylab.subplots_adjust(left=.03, right=.97, top=.97, bottom=.03, hspace=.01)
ax2=fig.add_subplot(len(dropdl), 1, count+1)
ax2.set_aspect(1)
mapbl=ax2.scatter(x, y, c=fom, s=60, marker='s', edgecolors='none', cmap=cmap, norm=norm)
ax2.set_xlim(x.min()-2, x.max()+2)
ax2.set_ylim(y.min()-2, y.max()+2)
ax2.set_title('plate %d' %(count+1))
#pylab.title('CP1Ess (V) Map')
figquat=pylab.figure(figsize=(8, 8))
stp = QuaternaryPlot(111, minlist=[0., 0., 0., 0.], ellabels=ellabels)
stp.scatter(comp, c=fom, s=pointsize, edgecolors='none', cmap=cmap, norm=norm)
stp.label(ha='center', va='center', fontsize=20)
stp.set_projection(azim=view_azim, elev=view_elev)
caxquat=figquat.add_axes((.83, .3, .04, .4))
cb=pylab.colorbar(stp.mappable, cax=caxquat, extend=extend)
cb.set_label(fomlabel, fontsize=16)
stp.ax.set_title('plate %d' %(count+1))
figquatall+=[figquat]
compsall=numpy.array(compsall)
fomall=numpy.array(fomall)
plateindall=numpy.array(plateindall)
import pylab, numpy
from myquaternaryutility import QuaternaryPlot
q = QuaternaryPlot(211)
q2 = QuaternaryPlot(212)
#t=numpy.linspace(0,1.,5)
#comps=[[a,b,c,d] for a in t for b in t for c in t for d in t if a+b+c+d==1.]
#comps=numpy.float32(comps)
t = numpy.linspace(0, 1., 30)
comps = [[a, b, 1. - a - b - (2. * a**2 + b), 2. * a**2 + b] for a in t
for b in t[:10] if a + b + (2. * a**2 + b) <= 1.]
comps = numpy.float32(comps)
examplenum = 1
if examplenum == 0:
compend1 = numpy.array([.2, .4, .3, .1])
compend2 = numpy.array([.2, 0, .2, .6])
critdist = .1
betweenpoints = False
elif examplenum == 1:
compend1 = numpy.array([0.1, .1, .8, 0])
compend2 = numpy.array([.2, .2, 0., .6])
critdist = .05
betweenpoints = False
elif examplenum == 2:
compend1 = numpy.array([0.125, .125, .6, .15])
compend2 = numpy.array([.2, .2, 0., .6])
critdist = .05
