net_p = ntc.newnet('BNZeebrugge', env)
# define nodes
nodeBC1 = ntc.newnode('PeakWaterLevel', 5, net_p)
ntc.setnodelevels(nodeBC1, 5,
np.asarray([6.35, 7.1, 7.4, 7.8, 7.9], dtype='float64'))
ntc.setnodetitle(nodeBC1, 'Peak Water Level (m)')
nodeBC2 = ntc.newnode('MaxSignificantWaveHeight', 5, net_p)
ntc.setnodelevels(nodeBC2, 5,
np.asarray([5.2, 5.7, 5.9, 6.08, 6.2], dtype='float64'))
ntc.setnodetitle(nodeBC2, 'Max. significant wave height (m)')
nodeR1 = ntc.newnode('Location_Houses', 4, net_p)
ntc.setnodetitle(nodeR1, 'Houses - Location')
ntc.setnodestatenames(nodeR1, "Area1, Area2, Area3, Area4")
ntc.setnodestatetitle(nodeR1, 0, 'Area 1 (has 283 houses)')
ntc.setnodestatetitle(nodeR1, 1, 'Area 2 (has 759 houses)')
ntc.setnodestatetitle(nodeR1, 2, 'Area 3 (has 383 houses)')
ntc.setnodestatetitle(nodeR1, 3, 'Area 4 (has 273 houses)')
nodeH1_R1 = ntc.newnode('MaxInundation_Houses', 0, net_p)
ntc.setnodelevels(nodeH1_R1, 4, np.asarray([0, 0, 0.5, 1, 2], dtype='float64'))
ntc.setnodetitle(nodeH1_R1, 'Houses - Max. Inundation depth (m)')
nodeC1_R1 = ntc.newnode('RelativeDamage_Houses', 0, net_p)
ntc.setnodelevels(nodeC1_R1, 4,
np.asarray([0, 0, 23.5, 47, 50], dtype='float64'))
ntc.setnodetitle(nodeC1_R1, 'Houses - Relative Damage (%)')
# define links
env = ntc.newenv()
# initialize environment
ntc.initenv(env)
# create new net
net_p = ntc.newnet('ChestClinic', env)
# define nodes
VisitAsia = ntc.newnode("VisitAsia", 2, net_p)
Tuberculosis = ntc.newnode ("Tuberculosis", 2, net_p)
Smoking = ntc.newnode ("Smoking", 2, net_p)
Cancer = ntc.newnode ("Cancer", 2, net_p)
TbOrCa = ntc.newnode ("TbOrCa", 2, net_p)
XRay = ntc.newnode ("XRay", 2, net_p)
# set node names
ntc.setnodestatenames(VisitAsia, "visit, no_visit");
ntc.setnodestatenames(Tuberculosis,"present, absent");
ntc.setnodestatenames(Smoking, "smoker, nonsmoker");
ntc.setnodestatenames(Cancer, "present, absent");
ntc.setnodestatenames(TbOrCa, "true, false");
ntc.setnodestatenames(XRay, "abnormal,normal");
# define links
ntc.addlink(parent=VisitAsia, child=Tuberculosis)
ntc.addlink(parent=Smoking, child=Cancer)
ntc.addlink(parent=Tuberculosis, child=TbOrCa)
ntc.addlink(parent=Cancer, child=TbOrCa)
ntc.addlink(parent=TbOrCa, child=XRay)
# set node probs
class UnitTests(unittest.TestCase):
def setUp(self):
from netica import Netica
self.netica = Netica()
self.netfilename = 'curvnet.dne'
self.env = self.netica.newenv()
self.netica.initenv(self.env)
self.net = self.netica.opennet(self.env, self.netfilename)
self.nl_p = self.netica.getnetnodes(self.net)
self.netica.compilenet(self.net)
def test_enternodelikelyhood(self):
self.netica.retractnetfindings(self.net)
node_p = self.netica.getnodenamed('radius', self.net)
self.netica.enternodelikelyhood(node_p, [1, 0, 0, 0, 0, 0])
# self.netica.savenet(env, net, 'test.dne')
def test_equationtotable(self):
node_p = self.netica.getnodenamed('radius', self.net)
self.netica.equationtotable(node_p, 10, True, True)
def test_revisecptsbycasefile(self):
casefilename = 'wavedir.cas'
file_p = self.netica._newstream(self.env, casefilename)
self.netica.revisecptsbycasefile(file_p, self.nl_p, 0, 1)
def test_getnodeequation(self):
node_p = self.netica.getnodenamed('phi', self.net)
eqn = self.netica.getnodeequation(node_p)
print eqn
# the radius node has no equation, thus should result in an empty string
node_p = self.netica.getnodenamed('radius', self.net)
eqn = self.netica.getnodeequation(node_p)
self.assertEqual(eqn, '')
def test_setnodeequation(self):
node_p = self.netica.getnodenamed('phi', self.net)
eqn_in = 'phi (theta, wavedir) = theta - wavedir'
self.netica.setnodeequation(node_p, eqn_in)
eqn_out = self.netica.getnodeequation(node_p)
self.assertEqual(eqn_in, eqn_out)
def test_newnode(self):
nodename = 'test'
node_p = self.netica.newnode(nodename, 3, self.net)
self.assertEqual(self.netica.getnodename(node_p), nodename)
def test_deletenode(self):
nodename = 'test'
node_p = self.netica.newnode(nodename, 3, self.net)
self.netica.deletenode(node_p)
def test_addlink(self):
parent = self.netica.getnodenamed('wavedir', self.net)
child = self.netica.getnodenamed('erosionfactor', self.net)
link_index = self.netica.addlink(parent, child)
print 'index', link_index
def test_deletelink(self):
child = self.netica.getnodenamed('erosionfactor', self.net)
link_index = 1
self.netica.deletelink(link_index, child)
def test_getnodelevels_continuous(self):
node_p = self.netica.getnodenamed('phi', self.net)
print self.netica.getnodelevels(node_p)
def test_getnodelevels_discrete(self):
node_p = self.netica.newnode('Time_horizon', 3, self.net)
#self.netica.setnodestatenames(node_p, "one, five, ten")
self.netica.getnodelevels(node_p)
def test_getnodestatename(self):
node_p = self.netica.newnode('Time_horizon', 3, self.net)
self.netica.setnodestatenames(node_p, "one, five, ten")
print 'STATE: "' + self.netica.getnodestatename(node_p, 0) + '"'
def test_enterfinding(self):
node_p = self.netica.getnodenamed('phi', self.net)
self.netica.enterfinding(node_p, 0)
def test_getnodeexpectedvalue(self):
node_p = self.netica.getnodenamed('phi', self.net)
expval = self.netica.getnodeexpectedvalue(node_p)
print 'expval = ', expval
class UnitTests(unittest.TestCase):
def setUp(self):
from netica import Netica
self.netica = Netica()
self.netfilename = 'curvnet.dne'
self.env = self.netica.newenv()
self.netica.initenv(self.env)
self.net = self.netica.opennet(self.env, self.netfilename)
self.nl_p = self.netica.getnetnodes(self.net)
self.netica.compilenet(self.net)
def test_enternodelikelyhood(self):
self.netica.retractnetfindings(self.net)
node_p = self.netica.getnodenamed('radius', self.net)
self.netica.enternodelikelyhood(node_p, [1,0,0,0,0,0])
# self.netica.savenet(env, net, 'test.dne')
def test_equationtotable(self):
node_p = self.netica.getnodenamed('radius', self.net)
self.netica.equationtotable(node_p, 10, True, True)
def test_revisecptsbycasefile(self):
casefilename = 'wavedir.cas'
file_p = self.netica._newstream(self.env, casefilename)
self.netica.revisecptsbycasefile(file_p, self.nl_p, 0, 1)
def test_getnodeequation(self):
node_p = self.netica.getnodenamed('phi', self.net)
eqn = self.netica.getnodeequation(node_p)
print eqn
# the radius node has no equation, thus should result in an empty string
node_p = self.netica.getnodenamed('radius', self.net)
eqn = self.netica.getnodeequation(node_p)
self.assertEqual(eqn, '')
def test_setnodeequation(self):
node_p = self.netica.getnodenamed('phi', self.net)
eqn_in = 'phi (theta, wavedir) = theta - wavedir'
self.netica.setnodeequation(node_p, eqn_in)
eqn_out = self.netica.getnodeequation(node_p)
self.assertEqual(eqn_in, eqn_out)
def test_newnode(self):
nodename = 'test'
node_p = self.netica.newnode(nodename, 3, self.net)
self.assertEqual(self.netica.getnodename(node_p), nodename)
def test_deletenode(self):
nodename = 'test'
node_p = self.netica.newnode(nodename, 3, self.net)
self.netica.deletenode(node_p)
def test_addlink(self):
parent = self.netica.getnodenamed('wavedir', self.net)
child = self.netica.getnodenamed('erosionfactor', self.net)
link_index = self.netica.addlink(parent, child)
print 'index',link_index
def test_deletelink(self):
child = self.netica.getnodenamed('erosionfactor', self.net)
link_index = 1
self.netica.deletelink(link_index, child)
def test_getnodelevels_continuous(self):
node_p = self.netica.getnodenamed('phi', self.net)
print self.netica.getnodelevels(node_p)
def test_getnodelevels_discrete(self):
node_p = self.netica.newnode('Time_horizon', 3, self.net)
#self.netica.setnodestatenames(node_p, "one, five, ten")
self.netica.getnodelevels(node_p)
def test_getnodestatename(self):
node_p = self.netica.newnode('Time_horizon', 3, self.net)
self.netica.setnodestatenames(node_p, "one, five, ten")
print 'STATE: "' + self.netica.getnodestatename(node_p, 0) + '"'
def test_enterfinding(self):
node_p = self.netica.getnodenamed('phi', self.net)
self.netica.enterfinding(node_p, 0)
def test_getnodeexpectedvalue(self):
node_p = self.netica.getnodenamed('phi', self.net)
expval = self.netica.getnodeexpectedvalue(node_p)
print 'expval = ',expval
env = ntc.newenv()
# initialize environment
ntc.initenv(env)
# create new net
net_p = ntc.newnet('ChestClinic', env)
# define nodes
VisitAsia = ntc.newnode("VisitAsia", 2, net_p)
Tuberculosis = ntc.newnode("Tuberculosis", 2, net_p)
Smoking = ntc.newnode("Smoking", 2, net_p)
Cancer = ntc.newnode("Cancer", 2, net_p)
TbOrCa = ntc.newnode("TbOrCa", 2, net_p)
XRay = ntc.newnode("XRay", 2, net_p)
# set node names
ntc.setnodestatenames(VisitAsia, "visit, no_visit")
ntc.setnodestatenames(Tuberculosis, "present, absent")
ntc.setnodestatenames(Smoking, "smoker, nonsmoker")
ntc.setnodestatenames(Cancer, "present, absent")
ntc.setnodestatenames(TbOrCa, "true, false")
ntc.setnodestatenames(XRay, "abnormal,normal")
# define links
ntc.addlink(parent=VisitAsia, child=Tuberculosis)
ntc.addlink(parent=Smoking, child=Cancer)
ntc.addlink(parent=Tuberculosis, child=TbOrCa)
ntc.addlink(parent=Cancer, child=TbOrCa)
ntc.addlink(parent=TbOrCa, child=XRay)
# set node probs
ntc.initenv(env)
# create new net
net_p = ntc.newnet('BNZeebrugge', env)
# define nodes
nodeBC1 = ntc.newnode('PeakWaterLevel', 5, net_p)
ntc.setnodelevels(nodeBC1, 5, np.asarray([6.35, 7.1, 7.4, 7.8, 7.9], dtype='float64'))
ntc.setnodetitle(nodeBC1,'Peak Water Level (m)')
nodeBC2 = ntc.newnode('MaxSignificantWaveHeight', 5, net_p)
ntc.setnodelevels(nodeBC2, 5, np.asarray([5.2, 5.7, 5.9, 6.08, 6.2], dtype='float64'))
ntc.setnodetitle(nodeBC2,'Max. significant wave height (m)')
nodeR1 = ntc.newnode('Location_Houses', 4, net_p)
ntc.setnodetitle(nodeR1,'Houses - Location')
ntc.setnodestatenames(nodeR1, "Area1, Area2, Area3, Area4")
ntc.setnodestatetitle(nodeR1, 0, 'Area 1 (has 283 houses)')
ntc.setnodestatetitle(nodeR1, 1, 'Area 2 (has 759 houses)')
ntc.setnodestatetitle(nodeR1, 2, 'Area 3 (has 383 houses)')
ntc.setnodestatetitle(nodeR1, 3, 'Area 4 (has 273 houses)')
nodeH1_R1 = ntc.newnode('MaxInundation_Houses', 0, net_p)
ntc.setnodelevels(nodeH1_R1, 4, np.asarray([0, 0, 0.5, 1, 2], dtype='float64'))
ntc.setnodetitle(nodeH1_R1,'Houses - Max. Inundation depth (m)')
nodeC1_R1 = ntc.newnode('RelativeDamage_Houses', 0, net_p)
ntc.setnodelevels(nodeC1_R1, 4, np.asarray([0, 0, 23.5, 47, 50], dtype='float64'))
ntc.setnodetitle(nodeC1_R1,'Houses - Relative Damage (%)')
# define links
ntc.addlink(parent=nodeBC1, child=nodeH1_R1)