def main(a=None):
if a is None:
a = sys.argv[1:]
args = parse_cmd(a)
# if output directory doesn't exist, create it
if not os.path.exists(args.model_path):
os.makedirs(args.model_path)
logger = get_logger("VocabBuilder", args.model_path + '/vocab.log.txt')
logger.info('\ncommand-line params : {0}\n'.format(sys.argv[1:]))
logger.info('{0}\n'.format(args))
# load embeds
logger.info("Load embeddings")
assert len(args.embed_paths) == len(args.embed_lang_ids), "One lang id for one embed file!"
word_embeds = [WordVectors.load(one_embed_path) for one_embed_path in args.embed_paths]
combined_word_dict = WordVectors.combine_embeds(word_embeds, args.embed_lang_ids)
logger.info("Final combined un-pruned embeddings size: %d." % len(combined_word_dict))
# create vocabs
logger.info("Creating Alphabets")
alphabet_path = os.path.join(args.model_path, 'alphabets/')
assert not os.path.exists(alphabet_path), "Alphabet path exists, please build with a new path."
word_alphabet, char_alphabet, pos_alphabet, type_alphabet, max_sent_length = create_alphabets(alphabet_path, args.data_paths[0], data_paths=args.data_paths[1:], embedd_dict=combined_word_dict, max_vocabulary_size=100000, creating_mode=True)
# save filtered embed
hit_keys = set()
for one_w in word_alphabet.instance2index:
if one_w in combined_word_dict:
hit_keys.add(one_w)
elif one_w.lower() in combined_word_dict:
hit_keys.add(one_w.lower())
filtered_embed = combined_word_dict.filter(hit_keys)
filtered_embed.save(os.path.join(alphabet_path, 'joint_embed.vec'))
def main():
args_parser = argparse.ArgumentParser(
description='Tuning with stack pointer parser')
args_parser.add_argument('--parser',
choices=['stackptr', 'biaffine'],
help='Parser',
default='stackptr')
args_parser.add_argument(
'--test') # "data/POS-penn/wsj/split1/wsj1.test.original"
args_parser.add_argument('--model_path',
help='path for saving model file.',
required=True)
# 'models/stack_ptr/92.17/'
args_parser.add_argument('--model_name',
help='name for saving model file.',
default='network.pt')
# 'network.pt'
args_parser.add_argument('--punctuation',
nargs='+',
type=str,
help='List of punctuations')
args_parser.add_argument('--beam',
type=int,
default=1,
help='Beam size for decoding')
args_parser.add_argument('--ordered',
action='store_true',
help='Using order constraints in decoding')
args_parser.add_argument('--display',
action='store_true',
help='Display wrong examples')
args_parser.add_argument('--gpu', action='store_true', help='Using GPU')
args_parser.add_argument('--pos_embedding', type=int, default=4)
args = args_parser.parse_args()
logger = get_logger("Analyzer")
test_path = args.test
model_path = args.model_path
model_name = args.model_name
punct_set = None
punctuation = args.punctuation
if punctuation is not None:
punct_set = set(punctuation)
logger.info("punctuations(%d): %s" %
(len(punct_set), ' '.join(punct_set)))
use_gpu = args.gpu
parser = args.parser
if parser == 'stackptr':
stackptr(model_path, model_name, test_path, punct_set, use_gpu, logger,
args)
else:
raise ValueError('Unknown parser: %s' % parser)
def __init__(self, train, test, embeddings_filename, batch_size=1):
self.train_path = train
self.test_path = test
self.mode = 'LSTM'
self.dropout = 'std'
self.num_epochs = 1
self.batch_size = batch_size
self.hidden_size = 256
self.num_filters = 30
self.learning_rate = 0.01
self.momentum = 0.9
self.decay_rate = 0.05
self.gamma = 0.0
self.schedule = 1
self.p_rnn = tuple([0.33, 0.5])
self.p_in = 0.33
self.p_out = 0.5
self.unk_replace = 0.0
self.bigram = True
self.embedding = 'glove'
self.logger = get_logger("NERCRF")
self.char_dim = 30
self.window = 3
self.num_layers = 1
self.tag_space = 128
self.initializer = nn.init.xavier_uniform
self.use_gpu = torch.cuda.is_available()
self.embedd_dict, self.embedd_dim = utils.load_embedding_dict(
self.embedding, embeddings_filename)
self.word_alphabet, self.char_alphabet, self.pos_alphabet, \
self.chunk_alphabet, self.ner_alphabet = conll03_data.create_alphabets("data/alphabets/ner_crf/", self.train_path, data_paths=[self.test_path],
embedd_dict=self.embedd_dict, max_vocabulary_size=50000)
self.word_table = self.construct_word_embedding_table()
self.logger.info("Word Alphabet Size: %d" % self.word_alphabet.size())
self.logger.info("Character Alphabet Size: %d" %
self.char_alphabet.size())
self.logger.info("POS Alphabet Size: %d" % self.pos_alphabet.size())
self.logger.info("Chunk Alphabet Size: %d" %
self.chunk_alphabet.size())
self.logger.info("NER Alphabet Size: %d" % self.ner_alphabet.size())
self.num_labels = self.ner_alphabet.size()
self.data_test = conll03_data.read_data_to_variable(
self.test_path,
self.word_alphabet,
self.char_alphabet,
self.pos_alphabet,
self.chunk_alphabet,
self.ner_alphabet,
use_gpu=self.use_gpu,
volatile=True)
self.writer = CoNLL03Writer(self.word_alphabet, self.char_alphabet,
self.pos_alphabet, self.chunk_alphabet,
self.ner_alphabet)
def main(a=None):
if a is None:
a = sys.argv[1:]
args = parse_cmd(a)
# if output directory doesn't exist, create it
if not os.path.exists(args.model_path):
os.makedirs(args.model_path)
logger = get_logger("VocabBuilder", args.model_path + '/vocab.log.txt')
logger.info('\ncommand-line params : {0}\n'.format(sys.argv[1:]))
logger.info('{0}\n'.format(args))
# load embeds
logger.info("Load embeddings")
word_dicts = []
word_dim = None
for one in args.word_paths:
one_word_dict, one_word_dim = utils.load_embedding_dict(
args.word_embedding, one)
assert word_dim is None or word_dim == one_word_dim, "Embedding size not matched!"
word_dicts.append(one_word_dict)
word_dim = one_word_dim
# combine embeds
combined_word_dict, count_ins, count_repeats = combine_embeds(word_dicts)
logger.info("Final embeddings size: %d." % len(combined_word_dict))
for one_fname, one_count_ins, one_count_repeats in zip(
args.word_paths, count_ins, count_repeats):
logger.info("For embed-file %s, count-in: %d, repeat-discard: %d." %
(one_fname, one_count_ins, one_count_repeats))
# create vocabs
logger.info("Creating Alphabets")
alphabet_path = os.path.join(args.model_path, 'alphabets/')
assert not os.path.exists(
alphabet_path), "Alphabet path exists, please build with a new path."
word_alphabet, char_alphabet, pos_alphabet, type_alphabet, max_sent_length = conllx_stacked_data.create_alphabets(
alphabet_path,
args.train,
data_paths=args.extra,
max_vocabulary_size=100000,
embedd_dict=combined_word_dict)
# printing info
num_words = word_alphabet.size()
num_chars = char_alphabet.size()
num_pos = pos_alphabet.size()
num_types = type_alphabet.size()
logger.info("Word Alphabet Size: %d" % num_words)
logger.info("Character Alphabet Size: %d" % num_chars)
logger.info("POS Alphabet Size: %d" % num_pos)
logger.info("Type Alphabet Size: %d" % num_types)
def main():
args_parser = argparse.ArgumentParser(description='Tuning with stack pointer parser')
args_parser.add_argument('--parser', choices=['stackptr', 'biaffine'], help='Parser', required=True)
args_parser.add_argument('--test') # "data/POS-penn/wsj/split1/wsj1.test.original"
args_parser.add_argument('--model_path', help='path for saving model file.', required=True)
args_parser.add_argument('--model_name', help='name for saving model file.', required=True)
args_parser.add_argument('--out_filename', help='filename to save analysis results.', required=True)
args_parser.add_argument('--punctuation', nargs='+', type=str, help='List of punctuations')
args_parser.add_argument('--beam', type=int, default=1, help='Beam size for decoding')
args_parser.add_argument('--ordered', action='store_true', help='Using order constraints in decoding')
args_parser.add_argument('--decode', choices=['mst', 'greedy', 'proj'], default='mst', help='decoding algorithm')
args_parser.add_argument('--display', action='store_true', help='Display wrong examples')
args_parser.add_argument('--gpu', action='store_true', help='Using GPU')
#
args_parser.add_argument('--extra_embed', type=str, help="Path for extra embedding file for extra language testing.")
args_parser.add_argument('--extra_embed_src', type=str, help="Path for extra embedding file for src language (maybe need adding new ones).")
args_parser.add_argument('--constraints_method', type=str, choices=['Lagrange', 'binary', 'PR'], default='binary', help='constraints training method')
args_parser.add_argument('--tolerance', type=float, default=0.003)
args_parser.add_argument('--constraint_file', type=str)
args_parser.add_argument('--ratio_file', type=str)
args_parser.add_argument('--mt_log', type=str)
args_parser.add_argument('--summary_log', type=str)
args_parser.add_argument('--gamma', type=float, default=1)
args = args_parser.parse_args()
logger = get_logger("Analyzer")
test_path = args.test
model_path = args.model_path
model_name = args.model_name
punct_set = None
punctuation = args.punctuation
if punctuation is not None:
punct_set = set(punctuation)
logger.info("punctuations(%d): %s" % (len(punct_set), ' '.join(punct_set)))
use_gpu = args.gpu
parser = args.parser
if parser == 'stackptr':
stackptr(model_path, model_name, test_path, punct_set, use_gpu, logger, args)
elif parser == 'biaffine':
biaffine(model_path, model_name, test_path, punct_set, use_gpu, logger, args)
else:
raise ValueError('Unknown parser: %s' % parser)
def main():
args_parser = argparse.ArgumentParser(description='Tuning with stack pointer parser')
args_parser.add_argument('--parser', choices=['stackptr', 'biaffine'], help='Parser', required=True)
args_parser.add_argument('--langs', nargs='+', help='Languages to train the classifier')
args_parser.add_argument('--test_lang', default=None, help='Language to be tested')
args_parser.add_argument('--data_dir', help='Data directory path')
args_parser.add_argument('--model_path', help='path for saving model file.', required=True)
args_parser.add_argument('--model_name', help='name for saving model file.', required=True)
args_parser.add_argument('--pre_model_path', type=str, required=True,
help='Path of the pretrained model.')
args_parser.add_argument('--pre_model_name', type=str, required=True,
help='Name of the pretrained model.')
args_parser.add_argument('--gpu', action='store_true', help='Using GPU')
args_parser.add_argument('--nclass', type=int, required=True, help='Number of language classes')
#
args_parser.add_argument('--embed_dir', type=str,
help="Path for extra embedding file for extra language testing.")
args_parser.add_argument('--num_epochs', type=int, default=50, help='Number of training epochs')
args_parser.add_argument('--batch_size', type=int, default=64, help='Number of sentences in each batch')
args_parser.add_argument('--train_level', type=str, default='word', choices=['word', 'sent'],
help='Use X-level classifier training')
# fix data-prepare seed
random.seed(1234)
np.random.seed(1234)
# model's seed
torch.manual_seed(1234)
args = args_parser.parse_args()
logger = get_logger("Classifier")
model_path = args.model_path
model_name = args.model_name
pre_model_path = args.pre_model_path
pre_model_name = args.pre_model_name
use_gpu = args.gpu
parser = args.parser
if parser == 'stackptr':
raise NotImplementedError("I'm lazy!")
elif parser == 'biaffine':
biaffine(model_path, model_name, pre_model_path, pre_model_name, use_gpu, logger, args)
else:
raise ValueError('Unknown parser: %s' % parser)
def test_main(args):
logger = get_logger("Analyzer")
test_path = args.input_data
model_path = args.model_path
model_name = args.model_name
punct_set = None
punctuation = args.punctuation
if punctuation is not None:
punct_set = set(punctuation)
logger.info("punctuations(%d): %s" %
(len(punct_set), ' '.join(punct_set)))
use_gpu = args.gpu
parser = args.parser
if parser == 'biaffine':
run_biaffine(model_path, model_name, test_path, punct_set, use_gpu,
logger, args)
else:
raise ValueError('Unknown parser: %s' % parser)
def main():
args_parser = argparse.ArgumentParser(description='Tuning with stack pointer parser')
args_parser.add_argument('--parser', choices=['stackptr', 'biaffine'], help='Parser', default='stackptr')
args_parser.add_argument('--test')
args_parser.add_argument('--model_path', help='path for saving model file.', required=True)
args_parser.add_argument('--model_name', help='name for saving model file.', default='network.pt')
args_parser.add_argument('--punctuation', nargs='+', type=str, help='List of punctuations')
args_parser.add_argument('--beam', type=int, default=1, help='Beam size for decoding')
args_parser.add_argument('--ordered', action='store_true', help='Using order constraints in decoding')
args_parser.add_argument('--gpu', action='store_true', help='Using GPU')
args_parser.add_argument('--pos_embedding', type=int, default=4)
args_parser.add_argument('--bert', action='store_true', help='use elmo embedding.')
args_parser.add_argument('--bert_path', help='path for bert embedding model.')
args_parser.add_argument('--bert_feature_dim', type=int, help='dimension for bert feature embedding')
args_parser.add_argument('--etri_test', help='path for etri data of bert')
args = args_parser.parse_args()
logger = get_logger("Analyzer")
test_path = args.test
model_path = args.model_path
model_name = args.model_name
punct_set = None
punctuation = args.punctuation
if punctuation is not None:
punct_set = set(punctuation)
logger.info("punctuations(%d): %s" % (len(punct_set), ' '.join(punct_set)))
use_gpu = args.gpu
parser = args.parser
if parser == 'stackptr':
stackptr(model_path, model_name, test_path, punct_set, use_gpu, logger, args)
else:
raise ValueError('Unknown parser: %s' % parser)
def train(args):
logger = get_logger("Parsing")
args.cuda = torch.cuda.is_available()
device = torch.device('cuda', 0) if args.cuda else torch.device('cpu')
train_path = args.train
dev_path = args.dev
test_path = args.test
num_epochs = args.num_epochs
batch_size = args.batch_size
optim = args.optim
learning_rate = args.learning_rate
lr_decay = args.lr_decay
amsgrad = args.amsgrad
eps = args.eps
betas = (args.beta1, args.beta2)
warmup_steps = args.warmup_steps
weight_decay = args.weight_decay
grad_clip = args.grad_clip
loss_ty_token = args.loss_type == 'token'
unk_replace = args.unk_replace
freeze = args.freeze
model_path = args.model_path
model_name = os.path.join(model_path, 'model.pt')
punctuation = args.punctuation
word_embedding = args.word_embedding
word_path = args.word_path
char_embedding = args.char_embedding
char_path = args.char_path
print(args)
word_dict, word_dim = utils.load_embedding_dict(word_embedding, word_path)
char_dict = None
if char_embedding != 'random':
char_dict, char_dim = utils.load_embedding_dict(
char_embedding, char_path)
else:
char_dict = None
char_dim = None
logger.info("Creating Alphabets")
alphabet_path = os.path.join(model_path, 'alphabets')
word_alphabet, char_alphabet, pos_alphabet, type_alphabet = conllx_data.create_alphabets(
alphabet_path,
train_path,
data_paths=[dev_path, test_path],
embedd_dict=word_dict,
max_vocabulary_size=200000)
num_words = word_alphabet.size()
num_chars = char_alphabet.size()
num_pos = pos_alphabet.size()
num_types = type_alphabet.size()
logger.info("Word Alphabet Size: %d" % num_words)
logger.info("Character Alphabet Size: %d" % num_chars)
logger.info("POS Alphabet Size: %d" % num_pos)
logger.info("Type Alphabet Size: %d" % num_types)
result_path = os.path.join(model_path, 'tmp')
if not os.path.exists(result_path):
os.makedirs(result_path)
punct_set = None
if punctuation is not None:
punct_set = set(punctuation)
logger.info("punctuations(%d): %s" %
(len(punct_set), ' '.join(punct_set)))
def construct_word_embedding_table():
scale = np.sqrt(3.0 / word_dim)
table = np.empty([word_alphabet.size(), word_dim], dtype=np.float32)
table[conllx_data.UNK_ID, :] = np.zeros([1, word_dim]).astype(
np.float32) if freeze else np.random.uniform(
-scale, scale, [1, word_dim]).astype(np.float32)
oov = 0
for word, index in word_alphabet.items():
if word in word_dict:
embedding = word_dict[word]
elif word.lower() in word_dict:
embedding = word_dict[word.lower()]
else:
embedding = np.zeros([1, word_dim]).astype(
np.float32) if freeze else np.random.uniform(
-scale, scale, [1, word_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('word OOV: %d' % oov)
return torch.from_numpy(table)
def construct_char_embedding_table():
if char_dict is None:
return None
scale = np.sqrt(3.0 / char_dim)
table = np.empty([num_chars, char_dim], dtype=np.float32)
table[conllx_data.UNK_ID, :] = np.random.uniform(
-scale, scale, [1, char_dim]).astype(np.float32)
oov = 0
for char, index, in char_alphabet.items():
if char in char_dict:
embedding = char_dict[char]
else:
embedding = np.random.uniform(-scale, scale,
[1, char_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('character OOV: %d' % oov)
return torch.from_numpy(table)
word_table = construct_word_embedding_table()
char_table = construct_char_embedding_table()
logger.info("constructing network...")
hyps = json.load(open(args.config, 'r'))
json.dump(hyps,
open(os.path.join(model_path, 'config.json'), 'w'),
indent=2)
model_type = hyps['model']
assert model_type in ['DeepBiAffine', 'NeuroMST', 'StackPtr']
assert word_dim == hyps['word_dim']
if char_dim is not None:
assert char_dim == hyps['char_dim']
else:
char_dim = hyps['char_dim']
use_pos = hyps['pos']
pos_dim = hyps['pos_dim']
mode = hyps['rnn_mode']
hidden_size = hyps['hidden_size']
arc_space = hyps['arc_space']
type_space = hyps['type_space']
p_in = hyps['p_in']
p_out = hyps['p_out']
p_rnn = hyps['p_rnn']
activation = hyps['activation']
prior_order = None
alg = 'transition' if model_type == 'StackPtr' else 'graph'
if model_type == 'DeepBiAffine':
num_layers = hyps['num_layers']
network = DeepBiAffine(word_dim,
num_words,
char_dim,
num_chars,
pos_dim,
num_pos,
mode,
hidden_size,
num_layers,
num_types,
arc_space,
type_space,
embedd_word=word_table,
embedd_char=char_table,
p_in=p_in,
p_out=p_out,
p_rnn=p_rnn,
pos=use_pos,
activation=activation)
elif model_type == 'NeuroMST':
num_layers = hyps['num_layers']
network = NeuroMST(word_dim,
num_words,
char_dim,
num_chars,
pos_dim,
num_pos,
mode,
hidden_size,
num_layers,
num_types,
arc_space,
type_space,
embedd_word=word_table,
embedd_char=char_table,
p_in=p_in,
p_out=p_out,
p_rnn=p_rnn,
pos=use_pos,
activation=activation)
elif model_type == 'StackPtr':
encoder_layers = hyps['encoder_layers']
decoder_layers = hyps['decoder_layers']
num_layers = (encoder_layers, decoder_layers)
prior_order = hyps['prior_order']
grandPar = hyps['grandPar']
sibling = hyps['sibling']
network = StackPtrNet(word_dim,
num_words,
char_dim,
num_chars,
pos_dim,
num_pos,
mode,
hidden_size,
encoder_layers,
decoder_layers,
num_types,
arc_space,
type_space,
embedd_word=word_table,
embedd_char=char_table,
prior_order=prior_order,
activation=activation,
p_in=p_in,
p_out=p_out,
p_rnn=p_rnn,
pos=use_pos,
grandPar=grandPar,
sibling=sibling)
else:
raise RuntimeError('Unknown model type: %s' % model_type)
if freeze:
freeze_embedding(network.word_embed)
network = network.to(device)
model = "{}-{}".format(model_type, mode)
logger.info("Network: %s, num_layer=%s, hidden=%d, act=%s" %
(model, num_layers, hidden_size, activation))
logger.info("dropout(in, out, rnn): %s(%.2f, %.2f, %s)" %
('variational', p_in, p_out, p_rnn))
logger.info('# of Parameters: %d' %
(sum([param.numel() for param in network.parameters()])))
logger.info("Reading Data")
if alg == 'graph':
data_train = conllx_data.read_bucketed_data(train_path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
symbolic_root=True)
data_dev = conllx_data.read_data(dev_path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
symbolic_root=True)
data_test = conllx_data.read_data(test_path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
symbolic_root=True)
else:
data_train = conllx_stacked_data.read_bucketed_data(
train_path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
prior_order=prior_order)
data_dev = conllx_stacked_data.read_data(dev_path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
prior_order=prior_order)
data_test = conllx_stacked_data.read_data(test_path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
prior_order=prior_order)
num_data = sum(data_train[1])
logger.info("training: #training data: %d, batch: %d, unk replace: %.2f" %
(num_data, batch_size, unk_replace))
pred_writer = CoNLLXWriter(word_alphabet, char_alphabet, pos_alphabet,
type_alphabet)
gold_writer = CoNLLXWriter(word_alphabet, char_alphabet, pos_alphabet,
type_alphabet)
optimizer, scheduler = get_optimizer(network.parameters(), optim,
learning_rate, lr_decay, betas, eps,
amsgrad, weight_decay, warmup_steps)
best_ucorrect = 0.0
best_lcorrect = 0.0
best_ucomlpete = 0.0
best_lcomplete = 0.0
best_ucorrect_nopunc = 0.0
best_lcorrect_nopunc = 0.0
best_ucomlpete_nopunc = 0.0
best_lcomplete_nopunc = 0.0
best_root_correct = 0.0
best_total = 0
best_total_nopunc = 0
best_total_inst = 0
best_total_root = 0
best_epoch = 0
test_ucorrect = 0.0
test_lcorrect = 0.0
test_ucomlpete = 0.0
test_lcomplete = 0.0
test_ucorrect_nopunc = 0.0
test_lcorrect_nopunc = 0.0
test_ucomlpete_nopunc = 0.0
test_lcomplete_nopunc = 0.0
test_root_correct = 0.0
test_total = 0
test_total_nopunc = 0
test_total_inst = 0
test_total_root = 0
patient = 0
beam = args.beam
reset = args.reset
num_batches = num_data // batch_size + 1
if optim == 'adam':
opt_info = 'adam, betas=(%.1f, %.3f), eps=%.1e, amsgrad=%s' % (
betas[0], betas[1], eps, amsgrad)
else:
opt_info = 'sgd, momentum=0.9, nesterov=True'
for epoch in range(1, num_epochs + 1):
start_time = time.time()
train_loss = 0.
train_arc_loss = 0.
train_type_loss = 0.
num_insts = 0
num_words = 0
num_back = 0
num_nans = 0
network.train()
lr = scheduler.get_lr()[0]
print(
'Epoch %d (%s, lr=%.6f, lr decay=%.6f, grad clip=%.1f, l2=%.1e): '
% (epoch, opt_info, lr, lr_decay, grad_clip, weight_decay))
if args.cuda:
torch.cuda.empty_cache()
gc.collect()
with torch.autograd.set_detect_anomaly(True):
for step, data in enumerate(
iterate_data(data_train,
batch_size,
bucketed=True,
unk_replace=unk_replace,
shuffle=True)):
optimizer.zero_grad()
bert_words = data["BERT_WORD"].to(device)
sub_word_idx = data["SUB_IDX"].to(device)
words = data['WORD'].to(device)
chars = data['CHAR'].to(device)
postags = data['POS'].to(device)
heads = data['HEAD'].to(device)
nbatch = words.size(0)
if alg == 'graph':
types = data['TYPE'].to(device)
masks = data['MASK'].to(device)
nwords = masks.sum() - nbatch
BERT = True
if BERT:
loss_arc, loss_type = network.loss(bert_words,
sub_word_idx,
words,
chars,
postags,
heads,
types,
mask=masks)
else:
loss_arc, loss_type = network.loss(words,
chars,
postags,
heads,
types,
mask=masks)
else:
masks_enc = data['MASK_ENC'].to(device)
masks_dec = data['MASK_DEC'].to(device)
stacked_heads = data['STACK_HEAD'].to(device)
children = data['CHILD'].to(device)
siblings = data['SIBLING'].to(device)
stacked_types = data['STACK_TYPE'].to(device)
nwords = masks_enc.sum() - nbatch
loss_arc, loss_type = network.loss(words,
chars,
postags,
heads,
stacked_heads,
children,
siblings,
stacked_types,
mask_e=masks_enc,
mask_d=masks_dec)
loss_arc = loss_arc.sum()
loss_type = loss_type.sum()
loss_total = loss_arc + loss_type
# print("loss", loss_arc, loss_type, loss_total)
if loss_ty_token:
loss = loss_total.div(nwords)
else:
loss = loss_total.div(nbatch)
loss.backward()
if grad_clip > 0:
grad_norm = clip_grad_norm_(network.parameters(),
grad_clip)
else:
grad_norm = total_grad_norm(network.parameters())
if math.isnan(grad_norm):
num_nans += 1
else:
optimizer.step()
scheduler.step()
with torch.no_grad():
num_insts += nbatch
num_words += nwords
train_loss += loss_total.item()
train_arc_loss += loss_arc.item()
train_type_loss += loss_type.item()
# update log
if step % 100 == 0:
torch.cuda.empty_cache()
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
curr_lr = scheduler.get_lr()[0]
num_insts = max(num_insts, 1)
num_words = max(num_words, 1)
log_info = '[%d/%d (%.0f%%) lr=%.6f (%d)] loss: %.4f (%.4f), arc: %.4f (%.4f), type: %.4f (%.4f)' % (
step, num_batches, 100. * step / num_batches, curr_lr,
num_nans, train_loss / num_insts,
train_loss / num_words, train_arc_loss / num_insts,
train_arc_loss / num_words, train_type_loss /
num_insts, train_type_loss / num_words)
sys.stdout.write(log_info)
sys.stdout.flush()
num_back = len(log_info)
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
print(
'total: %d (%d), loss: %.4f (%.4f), arc: %.4f (%.4f), type: %.4f (%.4f), time: %.2fs'
% (num_insts, num_words, train_loss / num_insts,
train_loss / num_words, train_arc_loss / num_insts,
train_arc_loss / num_words, train_type_loss / num_insts,
train_type_loss / num_words, time.time() - start_time))
print('-' * 125)
# evaluate performance on dev data
with torch.no_grad():
pred_filename = os.path.join(result_path, 'pred_dev%d' % epoch)
pred_writer.start(pred_filename)
gold_filename = os.path.join(result_path, 'gold_dev%d' % epoch)
gold_writer.start(gold_filename)
print('Evaluating dev:')
dev_stats, dev_stats_nopunct, dev_stats_root = eval(
alg,
data_dev,
network,
pred_writer,
gold_writer,
punct_set,
word_alphabet,
pos_alphabet,
device,
beam=beam)
pred_writer.close()
gold_writer.close()
dev_ucorr, dev_lcorr, dev_ucomlpete, dev_lcomplete, dev_total = dev_stats
dev_ucorr_nopunc, dev_lcorr_nopunc, dev_ucomlpete_nopunc, dev_lcomplete_nopunc, dev_total_nopunc = dev_stats_nopunct
dev_root_corr, dev_total_root, dev_total_inst = dev_stats_root
if best_ucorrect_nopunc + best_lcorrect_nopunc < dev_ucorr_nopunc + dev_lcorr_nopunc:
best_ucorrect_nopunc = dev_ucorr_nopunc
best_lcorrect_nopunc = dev_lcorr_nopunc
best_ucomlpete_nopunc = dev_ucomlpete_nopunc
best_lcomplete_nopunc = dev_lcomplete_nopunc
best_ucorrect = dev_ucorr
best_lcorrect = dev_lcorr
best_ucomlpete = dev_ucomlpete
best_lcomplete = dev_lcomplete
best_root_correct = dev_root_corr
best_total = dev_total
best_total_nopunc = dev_total_nopunc
best_total_root = dev_total_root
best_total_inst = dev_total_inst
best_epoch = epoch
patient = 0
torch.save(network.state_dict(), model_name)
pred_filename = os.path.join(result_path,
'pred_test%d' % epoch)
pred_writer.start(pred_filename)
gold_filename = os.path.join(result_path,
'gold_test%d' % epoch)
gold_writer.start(gold_filename)
print('Evaluating test:')
test_stats, test_stats_nopunct, test_stats_root = eval(
alg,
data_test,
network,
pred_writer,
gold_writer,
punct_set,
word_alphabet,
pos_alphabet,
device,
beam=beam)
test_ucorrect, test_lcorrect, test_ucomlpete, test_lcomplete, test_total = test_stats
test_ucorrect_nopunc, test_lcorrect_nopunc, test_ucomlpete_nopunc, test_lcomplete_nopunc, test_total_nopunc = test_stats_nopunct
test_root_correct, test_total_root, test_total_inst = test_stats_root
pred_writer.close()
gold_writer.close()
else:
patient += 1
print('-' * 125)
print(
'best dev W. Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)'
% (best_ucorrect, best_lcorrect, best_total,
best_ucorrect * 100 / best_total, best_lcorrect * 100 /
best_total, best_ucomlpete * 100 / dev_total_inst,
best_lcomplete * 100 / dev_total_inst, best_epoch))
print(
'best dev Wo Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)'
% (best_ucorrect_nopunc, best_lcorrect_nopunc,
best_total_nopunc, best_ucorrect_nopunc * 100 /
best_total_nopunc, best_lcorrect_nopunc * 100 /
best_total_nopunc, best_ucomlpete_nopunc * 100 /
best_total_inst, best_lcomplete_nopunc * 100 /
best_total_inst, best_epoch))
print(
'best dev Root: corr: %d, total: %d, acc: %.2f%% (epoch: %d)'
% (best_root_correct, best_total_root,
best_root_correct * 100 / best_total_root, best_epoch))
print('-' * 125)
print(
'best test W. Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)'
% (test_ucorrect, test_lcorrect, test_total,
test_ucorrect * 100 / test_total, test_lcorrect * 100 /
test_total, test_ucomlpete * 100 / test_total_inst,
test_lcomplete * 100 / test_total_inst, best_epoch))
print(
'best test Wo Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)'
% (test_ucorrect_nopunc, test_lcorrect_nopunc,
test_total_nopunc, test_ucorrect_nopunc * 100 /
test_total_nopunc, test_lcorrect_nopunc * 100 /
test_total_nopunc, test_ucomlpete_nopunc * 100 /
test_total_inst, test_lcomplete_nopunc * 100 /
test_total_inst, best_epoch))
print(
'best test Root: corr: %d, total: %d, acc: %.2f%% (epoch: %d)'
% (test_root_correct, test_total_root,
test_root_correct * 100 / test_total_root, best_epoch))
print('=' * 125)
if patient >= reset:
logger.info('reset optimizer momentums')
network.load_state_dict(
torch.load(model_name, map_location=device))
scheduler.reset_state()
patient = 0
def main():
parser = argparse.ArgumentParser(
description='Tuning with bi-directional RNN-CNN')
parser.add_argument('--mode',
choices=['RNN', 'LSTM', 'GRU'],
help='architecture of rnn',
required=True)
parser.add_argument('--num_epochs',
type=int,
default=100,
help='Number of training epochs')
parser.add_argument('--num_layers',
type=int,
default=2,
help='Number of layers')
parser.add_argument('--batch_size',
type=int,
default=16,
help='Number of sentences in each batch')
parser.add_argument('--bidirectional', default=True)
parser.add_argument('--hidden_size',
type=int,
default=128,
help='Number of hidden units in RNN')
parser.add_argument('--tag_space',
type=int,
default=0,
help='Dimension of tag space')
parser.add_argument('--num_filters',
type=int,
default=30,
help='Number of filters in CNN')
parser.add_argument('--char_dim',
type=int,
default=30,
help='Dimension of Character embeddings')
parser.add_argument('--learning_rate',
type=float,
default=0.1,
help='Learning rate')
parser.add_argument('--decay_rate',
type=float,
default=0.1,
help='Decay rate of learning rate')
parser.add_argument('--gamma',
type=float,
default=0.0,
help='weight for regularization')
parser.add_argument('--dropout',
choices=['std', 'variational'],
help='type of dropout',
required=True)
parser.add_argument('--p', type=float, default=0.5, help='dropout rate')
parser.add_argument('--schedule',
type=int,
help='schedule for learning rate decay')
parser.add_argument('--unk_replace',
type=float,
default=0.,
help='The rate to replace a singleton word with UNK')
parser.add_argument('--embedding',
choices=['glove', 'senna', 'sskip', 'polyglot'],
help='Embedding for words',
required=True)
parser.add_argument('--embedding_dict', help='path for embedding dict')
parser.add_argument('--data_path')
parser.add_argument('--modelname',
default="ASR_ERR_LSTM.json.pth.tar",
help='model name')
parser.add_argument('--task',
default="MEDIA",
help='task name : MEDIA or ATIS')
parser.add_argument('--optim',
default="SGD",
help=' Optimizer : SGD or ADAM')
parser.add_argument(
'--train') # "data/POS-penn/wsj/split1/wsj1.train.original"
parser.add_argument(
'--dev') # "data/POS-penn/wsj/split1/wsj1.dev.original"
parser.add_argument(
'--test') # "data/POS-penn/wsj/split1/wsj1.test.original"
args = parser.parse_args()
tim = datetime.now().strftime("%Y%m%d-%H%M%S")
log_file = '%s/log/log_model_%s_mode_%s_num_epochs_%d_batch_size_%d_hidden_size_%d_num_layers_%d_optim_%s_lr_%f_tag_space_%s.txt' % (
args.data_path, args.modelname, args.mode, args.num_epochs,
args.batch_size, args.hidden_size, args.num_layers, args.optim,
args.learning_rate, str(args.tag_space))
logger = get_logger("SLU_BLSTM", log_file)
mode = args.mode
train_path = args.train
dev_path = args.dev
test_path = args.test
num_epochs = args.num_epochs
batch_size = args.batch_size
hidden_size = args.hidden_size
num_filters = args.num_filters
learning_rate = args.learning_rate
momentum = 0.9
decay_rate = args.decay_rate
gamma = args.gamma
schedule = args.schedule
data_path = args.data_path
bidirectional = args.bidirectional
p = args.p
unk_replace = args.unk_replace
embedding = args.embedding
embedding_path = args.embedding_dict
out_path = args.data_path
embedd_dict, embedd_dim = utils.load_embedding_dict(
embedding, embedding_path)
logger.info("Creating Alphabets")
word_alphabet, char_alphabet, target_alphabet = slu_data.create_alphabets(
'%s/data_dic' % (data_path),
train_path,
data_paths=[dev_path, test_path],
embedd_dict=embedd_dict,
max_vocabulary_size=50000)
logger.info("Word Alphabet Size: %d" % word_alphabet.size())
logger.info("Character Alphabet Size: %d" % char_alphabet.size())
logger.info("Target Alphabet Size: %d" % target_alphabet.size())
logger.info("Bidirectionnal %s" % bidirectional)
logger.info("Reading Data")
use_gpu = torch.cuda.is_available()
data_train = slu_data.read_data_to_variable(train_path,
word_alphabet,
char_alphabet,
target_alphabet,
use_gpu=use_gpu)
num_data = sum(data_train[1])
num_labels = target_alphabet.size()
print(" num_labels", num_labels)
data_dev = slu_data.read_data_to_variable(dev_path,
word_alphabet,
char_alphabet,
target_alphabet,
use_gpu=use_gpu,
volatile=True)
data_test = slu_data.read_data_to_variable(test_path,
word_alphabet,
char_alphabet,
target_alphabet,
use_gpu=use_gpu,
volatile=True)
writer = SLUWriter(word_alphabet, char_alphabet, target_alphabet)
def construct_word_embedding_table():
scale = np.sqrt(3.0 / embedd_dim)
table = np.empty([word_alphabet.size(), embedd_dim], dtype=np.float32)
table[slu_data.UNK_ID, :] = np.random.uniform(
-scale, scale, [1, embedd_dim]).astype(np.float32)
oov = 0
for word, index in word_alphabet.items():
if word in embedd_dict:
embedding = embedd_dict[word]
elif word.lower() in embedd_dict:
embedding = embedd_dict[word.lower()]
else:
embedding = np.random.uniform(
-scale, scale, [1, embedd_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('oov: %d' % oov)
return torch.from_numpy(table)
word_table = construct_word_embedding_table()
char_dim = args.char_dim
window = 3
num_layers = args.num_layers
tag_space = args.tag_space
print(" embedd_dim ", embedd_dim)
if args.dropout == 'std':
network = BiRecurrentConv2(embedd_dim,
word_alphabet.size(),
char_dim,
char_alphabet.size(),
num_filters,
window,
mode,
hidden_size,
num_layers,
num_labels,
tag_space=tag_space,
embedd_word=word_table,
p_rnn=p,
bidirectional=bidirectional)
else:
network = BiVarRecurrentConv(embedd_dim,
word_alphabet.size(),
char_dim,
char_alphabet.size(),
num_filters,
window,
mode,
hidden_size,
num_layers,
num_labels,
tag_space=tag_space,
embedd_word=word_table,
p_rnn=p)
print(network)
if use_gpu:
network.cuda()
lr = learning_rate
if args.optim == "SGD":
optim = SGD(network.parameters(),
lr=lr,
momentum=momentum,
weight_decay=gamma,
nesterov=True)
else:
optim = Adam(network.parameters(),
lr=lr,
betas=(0.9, 0.9),
weight_decay=gamma)
logger.info(
"Network: %s, num_layer=%d, hidden=%d, filter=%d, tag_space=%d" %
(mode, num_layers, hidden_size, num_filters, tag_space))
logger.info(
"training: l2: %f, (#training data: %d, batch: %d, dropout: %.2f, unk replace: %.2f)"
% (gamma, num_data, batch_size, p, unk_replace))
num_batches = num_data / batch_size + 1
dev_f1 = 0.0
dev_acc = 0.0
dev_precision = 0.0
dev_recall = 0.0
test_f1 = 0.0
test_acc = 0.0
test_precision = 0.0
test_recall = 0.0
best_epoch = 0
model_path = ""
for epoch in range(1, num_epochs + 1):
print(
'Epoch %d (%s(%s), learning rate=%.4f, decay rate=%.4f (schedule=%d)): '
% (epoch, mode, args.dropout, lr, decay_rate, schedule))
train_err = 0.
train_corr = 0.
train_total = 0.
start_time = time.time()
num_back = 0
network.train()
for batch in range(1, num_batches + 1):
#for batch_train in slu_data.iterate_batch_variable(data_train, batch_size):
word, char, labels, masks, lengths = slu_data.get_batch_variable(
data_train, batch_size, unk_replace=unk_replace)
optim.zero_grad()
loss, corr, _ = network.loss(
word,
char,
labels,
mask=masks,
length=lengths,
leading_symbolic=slu_data.NUM_SYMBOLIC_TAGS)
loss.backward()
optim.step()
num_tokens = masks.data.sum()
#train_err += loss.data * num_tokens
train_err += loss.data[0] * num_tokens
#train_corr += corr.data
train_corr += corr.data[0]
train_total += num_tokens
time_ave = (time.time() - start_time) / batch
time_left = (num_batches - batch) * time_ave
# update log
if batch % 100 == 0:
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
log_info = 'train: %d/%d loss: %.4f, acc: %.2f%%, time left (estimated): %.2fs' % (
batch, num_batches, train_err / train_total,
train_corr * 100 / train_total, time_left)
sys.stdout.write(log_info)
sys.stdout.flush()
num_back = len(log_info)
batch = batch + 1
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
print('train: %d loss: %.4f, time: %.2fs' %
(num_batches, train_err / train_total, time.time() - start_time))
logger.info(
'train: %d loss: %.4f, time: %.2fs' %
(num_batches, train_err / train_total, time.time() - start_time))
print('train: %d loss: %.4f, acc: %.2f%%, time: %.2fs' %
(num_batches, train_err / train_total,
train_corr * 100 / train_total, time.time() - start_time))
loss_results = train_err / train_total
# evaluate performance on dev data
network.eval()
tmp_filename = '%s/predictions/dev_%s_num_layers_%s_%s.txt' % (
out_path, args.optim, str(args.num_layers), str(uid))
writer.start(tmp_filename)
all_target = []
all_preds = []
for batch in slu_data.iterate_batch_variable(data_dev, batch_size):
word, char, labels, masks, lengths = batch
_, _, preds = network.loss(
word,
char,
labels,
mask=masks,
length=lengths,
leading_symbolic=slu_data.NUM_SYMBOLIC_TAGS)
writer.write(word.data.cpu().numpy(),
preds.data.cpu().numpy(),
labels.data.cpu().numpy(),
lengths.cpu().numpy())
# correct_tag, pred_tag=writer.tensor_to_list(preds.cpu().numpy(),labels.cpu().numpy(), lengths.cpu().numpy())
# all_target.extend(correct_tag)
# all_preds.extend(pred_tag)
writer.close()
# precision, recall,f1,acc=writer.evaluate(all_preds,all_target)
acc, precision, recall, f1 = evaluate(tmp_filename, data_path, "dev",
args.task, args.optim)
print(
'dev acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%%' %
(acc, precision, recall, f1))
logger.info(
'dev acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%%' %
(acc, precision, recall, f1))
if dev_acc < acc:
dev_f1 = f1
dev_acc = acc
dev_precision = precision
dev_recall = recall
best_epoch = epoch
# save best model
model_path = "%s/models/best_model_%s_mode_%s_num_epochs_%d_batch_size_%d_hidden_size_%d_num_layers_%d_bestdevacc_%f_bestepoch_%d_optim_%s_lr_%f_tag_space_%s" % (
args.data_path, args.modelname, mode, num_epochs, batch_size,
hidden_size, args.num_layers, dev_acc, best_epoch, args.optim,
args.learning_rate, str(tag_space))
torch.save(network, model_path)
# evaluate on test data when better performance detected
"""
tmp_filename = '%s/tmp/%s_test%d' % (data_path,tim, epoch)
writer.start(tmp_filename)
for batch in slu_data.iterate_batch_variable(data_test, batch_size):
word, features, sents, char, labels, masks, lengths = batch
_, _, preds,probs = network.loss(features, char, labels, mask=masks, length=lengths,
leading_symbolic=slu_data.NUM_SYMBOLIC_TAGS)
writer.write(word.data.cpu().numpy(),sents.data.cpu().numpy(),
preds.data.cpu().numpy(), probs.data.cpu().numpy(), labels.data.cpu().numpy(), lengths.cpu().numpy())
writer.close()
test_acc, test_precision, test_recall, test_f1 = evaluate(tmp_filename, data_path,"test",tim)
"""
logger.info(
"best dev acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)"
% (dev_acc, dev_precision, dev_recall, dev_f1, best_epoch))
# logger.info("best test acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)" % (
# test_acc, test_precision, test_recall, test_f1, best_epoch))
if epoch % schedule == 0:
lr = learning_rate / (1.0 + epoch * decay_rate)
if args.optim == "SGD":
optim = SGD(network.parameters(),
lr=lr,
momentum=momentum,
weight_decay=gamma,
nesterov=True)
else:
optim = Adam(network.parameters(),
lr=lr,
betas=(0.9, 0.9),
weight_decay=gamma)
# end epoch
# test evaluation
# load model
print("model path ", model_path)
network = torch.load(model_path)
if use_gpu:
network.cuda()
# mode eval
network.eval()
# evaluate on test dev when better performance detected
tmp_filename = '%s/predictions/dev_best_model_%s_mode_%s_num_epochs_%d_batch_size_%d_hidden_size_%d_num_layers_%d_bestdevacc_%f_bestF1_%f_bestepoch_%d_optim_%s_lr_%f_tag_space_%s' % (
out_path, args.modelname, mode, num_epochs, batch_size, hidden_size,
num_layers, dev_acc, dev_f1, best_epoch, args.optim,
args.learning_rate, tag_space)
#tmp_filename = '%s/predictions/dev_best_model_%s_mode_%s_num_epochs_%d_batch_size_%d_hidden_size_%d_num_layers_%d_bestdevacc_%f_bestepoch_%d_optim_%s_lr_%f_tag_space_%s' % (out_path,args.modelname,mode,num_epochs,batch_size,hidden_size,num_layers,dev_acc,best_epoch,args.optim,args.learning_rate,tag_space) #tmp_filename = '%s/predictions/dev_bestmodel_devacc_%f_epoch_%d' % (out_path,dev_acc, best_epoch)
writer.start(tmp_filename)
all_target = []
all_preds = []
for batch in slu_data.iterate_batch_variable(data_dev, batch_size):
word, char, labels, masks, lengths = batch
_, _, preds = network.loss(word,
char,
labels,
mask=masks,
length=lengths,
leading_symbolic=slu_data.NUM_SYMBOLIC_TAGS)
writer.write(word.data.cpu().numpy(),
preds.data.cpu().numpy(),
labels.data.cpu().numpy(),
lengths.cpu().numpy())
writer.close()
dev_acc, dev_precision, dev_recall, dev_f1 = evaluate(
tmp_filename, data_path, "dev", args.task, args.optim)
# evaluate on test data when better performance detected
tmp_filename = '%s/predictions/test_best_model_%s_mode_%s_num_epochs_%d_batch_size_%d_hidden_size_%d_num_layers_%d_bestdevacc_%f_bestF1_%f_bestepoch_%d_optim_%s_lr_%f_tag_space_%s' % (
out_path, args.modelname, mode, num_epochs, batch_size, hidden_size,
num_layers, dev_acc, dev_f1, best_epoch, args.optim,
args.learning_rate, tag_space)
# tmp_filename = '%s/predictions/test_best_model_%s_mode_%s_num_epochs_%d_batch_size_%d_hidden_size_%d_num_layers_%d_bestdevacc_%f_bestepoch_%d_optim_%s_lr_%f_tag_space_%s' % (out_path,args.modelname,mode,num_epochs,batch_size,hidden_size,num_layers,dev_acc,best_epoch, args.optim, args.learning_rate, tag_space)
writer.start(tmp_filename)
all_target = []
all_preds = []
for batch in slu_data.iterate_batch_variable(data_test, batch_size):
word, char, labels, masks, lengths = batch
_, _, preds = network.loss(word,
char,
labels,
mask=masks,
length=lengths,
leading_symbolic=slu_data.NUM_SYMBOLIC_TAGS)
writer.write(word.data.cpu().numpy(),
preds.data.cpu().numpy(),
labels.data.cpu().numpy(),
lengths.cpu().numpy())
writer.close()
test_acc, test_precision, test_recall, test_f1 = evaluate(
tmp_filename, data_path, "test", args.task, args.optim)
print(
"best dev acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)"
% (dev_acc, dev_precision, dev_recall, dev_f1, best_epoch))
print(
"best test acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)"
% (test_acc, test_precision, test_recall, test_f1, best_epoch))
logger.info(
"best dev acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)"
% (dev_acc, dev_precision, dev_recall, dev_f1, best_epoch))
logger.info(
"best test acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)"
% (test_acc, test_precision, test_recall, test_f1, best_epoch))
def main():
parser = argparse.ArgumentParser(description='Tuning with bi-directional RNN-CNN-CRF')
parser.add_argument('--mode', choices=['RNN', 'LSTM', 'GRU'], help='architecture of rnn', required=True)
parser.add_argument('--num_epochs', type=int, default=100, help='Number of training epochs')
parser.add_argument('--batch_size', type=int, default=16, help='Number of sentences in each batch')
parser.add_argument('--hidden_size', type=int, default=128, help='Number of hidden units in RNN')
parser.add_argument('--tag_space', type=int, default=0, help='Dimension of tag space')
parser.add_argument('--num_filters', type=int, default=30, help='Number of filters in CNN')
parser.add_argument('--char_dim', type=int, default=30, help='Dimension of Character embeddings')
parser.add_argument('--learning_rate', type=float, default=0.015, help='Learning rate')
parser.add_argument('--alpha', type=float, default=0.1, help='alpha of rmsprop')
parser.add_argument('--momentum', type=float, default=0, help='momentum')
parser.add_argument('--lr_decay', type=float, default=0, help='Decay rate of learning rate')
parser.add_argument('--gamma', type=float, default=0.0, help='weight for regularization')
parser.add_argument('--dropout', choices=['std', 'variational'], help='type of dropout', required=True)
parser.add_argument('--p', type=float, default=0.5, help='dropout rate')
parser.add_argument('--bigram', action='store_true', help='bi-gram parameter for CRF')
parser.add_argument('--schedule', type=int, help='schedule for learning rate decay')
parser.add_argument('--unk_replace', type=float, default=0., help='The rate to replace a singleton word with UNK')
parser.add_argument('--embedding', choices=['word2vec', 'glove', 'senna', 'sskip', 'polyglot', 'elmo'], help='Embedding for words', required=True)
parser.add_argument('--embedding_dict', help='path for embedding dict')
parser.add_argument('--elmo_option', help='path for ELMo option file')
parser.add_argument('--elmo_weight', help='path for ELMo weight file')
parser.add_argument('--elmo_cuda', help='assign GPU for ELMo embedding task')
parser.add_argument('--attention', choices=['none', 'mlp', 'fine'], help='attetion mode', required=True)
parser.add_argument('--data_reduce', help='data size reduce, value is keeping rate', default=1.0)
parser.add_argument('--train') # "data/POS-penn/wsj/split1/wsj1.train.original"
parser.add_argument('--dev') # "data/POS-penn/wsj/split1/wsj1.dev.original"
parser.add_argument('--test') # "data/POS-penn/wsj/split1/wsj1.test.original"
args = parser.parse_args()
logger = get_logger("NERCRF")
mode = args.mode
train_path = args.train
dev_path = args.dev
test_path = args.test
num_epochs = args.num_epochs
batch_size = args.batch_size
hidden_size = args.hidden_size
num_filters = args.num_filters
learning_rate = args.learning_rate
alpha = args.alpha
momentum = args.momentum
lr_decay = args.lr_decay
gamma = args.gamma
schedule = args.schedule
p = args.p
unk_replace = args.unk_replace
bigram = args.bigram
embedding = args.embedding
embedding_path = args.embedding_dict
elmo_option = args.elmo_option
elmo_weight = args.elmo_weight
elmo_cuda = int(args.elmo_cuda)
attention_mode = args.attention
data_reduce = float(args.data_reduce)
embedd_dict, embedd_dim = utils.load_embedding_dict(embedding, embedding_path)
logger.info("Creating Alphabets")
word_alphabet, char_alphabet, pos_alphabet, \
chunk_alphabet, ner_alphabet = bionlp_data.create_alphabets(os.path.join(Path(train_path).parent.abspath(
), "alphabets"), train_path, data_paths=[dev_path, test_path], embedd_dict=embedd_dict, max_vocabulary_size=50000)
logger.info("Word Alphabet Size: %d" % word_alphabet.size())
logger.info("Character Alphabet Size: %d" % char_alphabet.size())
logger.info("POS Alphabet Size: %d" % pos_alphabet.size())
logger.info("Chunk Alphabet Size: %d" % chunk_alphabet.size())
logger.info("NER Alphabet Size: %d" % ner_alphabet.size())
if embedding == 'elmo':
logger.info("Loading ELMo Embedder")
ee = ElmoEmbedder(options_file=elmo_option, weight_file=elmo_weight, cuda_device=elmo_cuda)
else:
ee = None
logger.info("Reading Data")
use_gpu = torch.cuda.is_available()
data_train = bionlp_data.read_data_to_variable(train_path, word_alphabet, char_alphabet, pos_alphabet,
chunk_alphabet, ner_alphabet, use_gpu=use_gpu,
elmo_ee=ee, data_reduce=data_reduce)
num_data = sum(data_train[1])
num_labels = ner_alphabet.size()
data_dev = bionlp_data.read_data_to_variable(dev_path, word_alphabet, char_alphabet, pos_alphabet,
chunk_alphabet, ner_alphabet, use_gpu=use_gpu, volatile=True,
elmo_ee=ee)
data_test = bionlp_data.read_data_to_variable(test_path, word_alphabet, char_alphabet, pos_alphabet,
chunk_alphabet, ner_alphabet, use_gpu=use_gpu, volatile=True,
elmo_ee=ee)
writer = BioNLPWriter(word_alphabet, char_alphabet, pos_alphabet, chunk_alphabet, ner_alphabet)
def construct_word_embedding_table():
scale = np.sqrt(3.0 / embedd_dim)
table = np.empty([word_alphabet.size(), embedd_dim], dtype=np.float32)
table[bionlp_data.UNK_ID, :] = np.random.uniform(-scale, scale, [1, embedd_dim]).astype(np.float32)
oov = 0
for word, index in word_alphabet.items():
if not embedd_dict == None and word in embedd_dict:
embedding = embedd_dict[word]
elif not embedd_dict == None and word.lower() in embedd_dict:
embedding = embedd_dict[word.lower()]
else:
embedding = np.random.uniform(-scale, scale, [1, embedd_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('oov: %d' % oov)
return torch.from_numpy(table)
word_table = construct_word_embedding_table()
logger.info("constructing network...")
char_dim = args.char_dim
window = 3
num_layers = 1
tag_space = args.tag_space
if args.dropout == 'std':
if attention_mode == 'none':
network = BiRecurrentConvCRF(embedd_dim, word_alphabet.size(),
char_dim, char_alphabet.size(),
num_filters, window,
mode, hidden_size, num_layers, num_labels,
tag_space=tag_space, embedd_word=word_table, p_in=p, p_rnn=p, bigram=bigram,
elmo=(embedding == 'elmo'))
else:
network = BiRecurrentConvAttentionCRF(embedd_dim, word_alphabet.size(),
char_dim, char_alphabet.size(),
num_filters, window,
mode, hidden_size, num_layers, num_labels,
tag_space=tag_space, embedd_word=word_table, p_in=p, p_rnn=p, bigram=bigram,
elmo=(embedding == 'elmo'), attention_mode=attention_mode)
else:
raise NotImplementedError
if use_gpu:
network.cuda()
lr = learning_rate
# optim = SGD(network.parameters(), lr=lr, momentum=momentum, weight_decay=gamma, nesterov=True)
optim = RMSprop(network.parameters(), lr=lr, alpha=alpha, momentum=momentum, weight_decay=gamma)
logger.info("Network: %s, num_layer=%d, hidden=%d, filter=%d, tag_space=%d, crf=%s" % (
mode, num_layers, hidden_size, num_filters, tag_space, 'bigram' if bigram else 'unigram'))
logger.info("training: l2: %f, (#training data: %d, batch: %d, dropout: %.2f, unk replace: %.2f)" % (
gamma, num_data, batch_size, p, unk_replace))
num_batches = num_data // batch_size + 1
dev_f1 = 0.0
dev_acc = 0.0
dev_precision = 0.0
dev_recall = 0.0
test_f1 = 0.0
test_acc = 0.0
test_precision = 0.0
test_recall = 0.0
best_epoch = 0
for epoch in range(1, num_epochs + 1):
print('Epoch %d (%s(%s), learning rate=%.4f, decay rate=%.4f (schedule=%d)): ' % (
epoch, mode, args.dropout, lr, lr_decay, schedule))
train_err = 0.
train_total = 0.
start_time = time.time()
num_back = 0
network.train()
for batch in range(1, num_batches + 1):
word, char, _, _, labels, masks, lengths, elmo_embedding = bionlp_data.get_batch_variable(data_train, batch_size,
unk_replace=unk_replace)
optim.zero_grad()
loss = network.loss(word, char, labels, mask=masks, elmo_word=elmo_embedding)
loss.backward()
clip_grad_norm(network.parameters(), 5.0)
optim.step()
num_inst = word.size(0)
train_err += loss.data[0] * num_inst
train_total += num_inst
time_ave = (time.time() - start_time) / batch
time_left = (num_batches - batch) * time_ave
# update log
if batch % 100 == 0:
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
log_info = 'train: %d/%d loss: %.4f, time left (estimated): %.2fs' % (
batch, num_batches, train_err / train_total, time_left)
sys.stdout.write(log_info)
sys.stdout.flush()
num_back = len(log_info)
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
print('train: %d loss: %.4f, time: %.2fs' % (num_batches, train_err / train_total, time.time() - start_time))
# evaluate performance on dev data
network.eval()
tmp_filename = 'tmp/%s_dev%d' % (str(uid), epoch)
writer.start(tmp_filename)
for batch in bionlp_data.iterate_batch_variable(data_dev, batch_size):
word, char, pos, chunk, labels, masks, lengths, elmo_embedding = batch
preds, _ = network.decode(word, char, target=labels, mask=masks,
leading_symbolic=bionlp_data.NUM_SYMBOLIC_TAGS, elmo_word=elmo_embedding)
writer.write(word.data.cpu().numpy(), pos.data.cpu().numpy(), chunk.data.cpu().numpy(),
preds.cpu().numpy(), labels.data.cpu().numpy(), lengths.cpu().numpy())
writer.close()
acc, precision, recall, f1 = evaluate(tmp_filename)
print('dev acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%%' % (acc, precision, recall, f1))
if dev_f1 < f1:
dev_f1 = f1
dev_acc = acc
dev_precision = precision
dev_recall = recall
best_epoch = epoch
# evaluate on test data when better performance detected
tmp_filename = 'tmp/%s_test%d' % (str(uid), epoch)
writer.start(tmp_filename)
for batch in bionlp_data.iterate_batch_variable(data_test, batch_size):
word, char, pos, chunk, labels, masks, lengths, elmo_embedding = batch
preds, _ = network.decode(word, char, target=labels, mask=masks,
leading_symbolic=bionlp_data.NUM_SYMBOLIC_TAGS, elmo_word=elmo_embedding)
writer.write(word.data.cpu().numpy(), pos.data.cpu().numpy(), chunk.data.cpu().numpy(),
preds.cpu().numpy(), labels.data.cpu().numpy(), lengths.cpu().numpy())
writer.close()
test_acc, test_precision, test_recall, test_f1 = evaluate(tmp_filename)
print("best dev acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)" % (
dev_acc, dev_precision, dev_recall, dev_f1, best_epoch))
print("best test acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)" % (
test_acc, test_precision, test_recall, test_f1, best_epoch))
if epoch % schedule == 0:
# lr = learning_rate / (1.0 + epoch * lr_decay)
# optim = SGD(network.parameters(), lr=lr, momentum=momentum, weight_decay=gamma, nesterov=True)
lr = lr * lr_decay
optim.param_groups[0]['lr'] = lr
def main():
args_parser = argparse.ArgumentParser(
description='Tuning with graph-based parsing')
args_parser.register('type', 'bool', str2bool)
args_parser.add_argument('--seed',
type=int,
default=1234,
help='random seed for reproducibility')
args_parser.add_argument('--mode',
choices=['RNN', 'LSTM', 'GRU', 'FastLSTM'],
help='architecture of rnn',
required=True)
args_parser.add_argument('--num_epochs',
type=int,
default=1000,
help='Number of training epochs')
args_parser.add_argument('--batch_size',
type=int,
default=64,
help='Number of sentences in each batch')
args_parser.add_argument('--hidden_size',
type=int,
default=256,
help='Number of hidden units in RNN')
args_parser.add_argument('--arc_space',
type=int,
default=128,
help='Dimension of tag space')
args_parser.add_argument('--type_space',
type=int,
default=128,
help='Dimension of tag space')
args_parser.add_argument('--num_layers',
type=int,
default=1,
help='Number of layers of encoder.')
args_parser.add_argument('--num_filters',
type=int,
default=50,
help='Number of filters in CNN')
args_parser.add_argument('--pos',
action='store_true',
help='use part-of-speech embedding.')
args_parser.add_argument('--char',
action='store_true',
help='use character embedding and CNN.')
args_parser.add_argument('--pos_dim',
type=int,
default=50,
help='Dimension of POS embeddings')
args_parser.add_argument('--char_dim',
type=int,
default=50,
help='Dimension of Character embeddings')
args_parser.add_argument('--opt',
choices=['adam', 'sgd', 'adamax'],
help='optimization algorithm')
args_parser.add_argument('--objective',
choices=['cross_entropy', 'crf'],
default='cross_entropy',
help='objective function of training procedure.')
args_parser.add_argument('--decode',
choices=['mst', 'greedy'],
default='mst',
help='decoding algorithm')
args_parser.add_argument('--learning_rate',
type=float,
default=0.01,
help='Learning rate')
# args_parser.add_argument('--decay_rate', type=float, default=0.05, help='Decay rate of learning rate')
args_parser.add_argument('--clip',
type=float,
default=5.0,
help='gradient clipping')
args_parser.add_argument('--gamma',
type=float,
default=0.0,
help='weight for regularization')
args_parser.add_argument('--epsilon',
type=float,
default=1e-8,
help='epsilon for adam or adamax')
args_parser.add_argument('--p_rnn',
nargs='+',
type=float,
required=True,
help='dropout rate for RNN')
args_parser.add_argument('--p_in',
type=float,
default=0.33,
help='dropout rate for input embeddings')
args_parser.add_argument('--p_out',
type=float,
default=0.33,
help='dropout rate for output layer')
# args_parser.add_argument('--schedule', type=int, help='schedule for learning rate decay')
args_parser.add_argument(
'--unk_replace',
type=float,
default=0.,
help='The rate to replace a singleton word with UNK')
args_parser.add_argument('--punctuation',
nargs='+',
type=str,
help='List of punctuations')
args_parser.add_argument(
'--word_embedding',
choices=['word2vec', 'glove', 'senna', 'sskip', 'polyglot'],
help='Embedding for words',
required=True)
args_parser.add_argument('--word_path',
help='path for word embedding dict')
args_parser.add_argument(
'--freeze',
action='store_true',
help='frozen the word embedding (disable fine-tuning).')
args_parser.add_argument('--char_embedding',
choices=['random', 'polyglot'],
help='Embedding for characters',
required=True)
args_parser.add_argument('--char_path',
help='path for character embedding dict')
args_parser.add_argument('--data_dir', help='Data directory path')
args_parser.add_argument(
'--src_lang',
required=True,
help='Src language to train dependency parsing model')
args_parser.add_argument('--aux_lang',
nargs='+',
help='Language names for adversarial training')
args_parser.add_argument('--vocab_path',
help='path for prebuilt alphabets.',
default=None)
args_parser.add_argument('--model_path',
help='path for saving model file.',
required=True)
args_parser.add_argument('--model_name',
help='name for saving model file.',
required=True)
#
args_parser.add_argument('--attn_on_rnn',
action='store_true',
help='use self-attention on top of context RNN.')
args_parser.add_argument('--no_word',
type='bool',
default=False,
help='do not use word embedding.')
args_parser.add_argument('--use_bert',
type='bool',
default=False,
help='use multilingual BERT.')
#
# lrate schedule with warmup in the first iter.
args_parser.add_argument('--use_warmup_schedule',
type='bool',
default=False,
help="Use warmup lrate schedule.")
args_parser.add_argument('--decay_rate',
type=float,
default=0.75,
help='Decay rate of learning rate')
args_parser.add_argument('--max_decay',
type=int,
default=9,
help='Number of decays before stop')
args_parser.add_argument('--schedule',
type=int,
help='schedule for learning rate decay')
args_parser.add_argument('--double_schedule_decay',
type=int,
default=5,
help='Number of decays to double schedule')
args_parser.add_argument(
'--check_dev',
type=int,
default=5,
help='Check development performance in every n\'th iteration')
# encoder selection
args_parser.add_argument('--encoder_type',
choices=['Transformer', 'RNN', 'SelfAttn'],
default='RNN',
help='do not use context RNN.')
args_parser.add_argument(
'--pool_type',
default='mean',
choices=['max', 'mean', 'weight'],
help='pool type to form fixed length vector from word embeddings')
# Tansformer encoder
args_parser.add_argument(
'--trans_hid_size',
type=int,
default=1024,
help='#hidden units in point-wise feed-forward in transformer')
args_parser.add_argument(
'--d_k',
type=int,
default=64,
help='d_k for multi-head-attention in transformer encoder')
args_parser.add_argument(
'--d_v',
type=int,
default=64,
help='d_v for multi-head-attention in transformer encoder')
args_parser.add_argument('--num_head',
type=int,
default=8,
help='Value of h in multi-head attention')
args_parser.add_argument(
'--use_all_encoder_layers',
type='bool',
default=False,
help='Use a weighted representations of all encoder layers')
# - positional
args_parser.add_argument(
'--enc_use_neg_dist',
action='store_true',
help="Use negative distance for enc's relational-distance embedding.")
args_parser.add_argument(
'--enc_clip_dist',
type=int,
default=0,
help="The clipping distance for relative position features.")
args_parser.add_argument('--position_dim',
type=int,
default=50,
help='Dimension of Position embeddings.')
args_parser.add_argument(
'--position_embed_num',
type=int,
default=200,
help=
'Minimum value of position embedding num, which usually is max-sent-length.'
)
args_parser.add_argument('--train_position',
action='store_true',
help='train positional encoding for transformer.')
args_parser.add_argument('--input_concat_embeds',
action='store_true',
help="Concat input embeddings, otherwise add.")
args_parser.add_argument('--input_concat_position',
action='store_true',
help="Concat position embeddings, otherwise add.")
args_parser.add_argument(
'--partitioned',
type='bool',
default=False,
help=
"Partition the content and positional attention for multi-head attention."
)
args_parser.add_argument(
'--partition_type',
choices=['content-position', 'lexical-delexical'],
default='content-position',
help="How to apply partition in the self-attention.")
#
args_parser.add_argument(
'--train_len_thresh',
type=int,
default=100,
help='In training, discard sentences longer than this.')
#
# regarding adversarial training
args_parser.add_argument('--pre_model_path',
type=str,
default=None,
help='Path of the pretrained model.')
args_parser.add_argument('--pre_model_name',
type=str,
default=None,
help='Name of the pretrained model.')
args_parser.add_argument('--adv_training',
type='bool',
default=False,
help='Use adversarial training.')
args_parser.add_argument(
'--lambdaG',
type=float,
default=0.001,
help='Scaling parameter to control generator loss.')
args_parser.add_argument('--discriminator',
choices=['weak', 'not-so-weak', 'strong'],
default='weak',
help='architecture of the discriminator')
args_parser.add_argument(
'--delay',
type=int,
default=0,
help='Number of epochs to be run first for the source task')
args_parser.add_argument(
'--n_critic',
type=int,
default=5,
help='Number of training steps for discriminator per iter')
args_parser.add_argument(
'--clip_disc',
type=float,
default=5.0,
help='Lower and upper clip value for disc. weights')
args_parser.add_argument('--debug',
type='bool',
default=False,
help='Use debug portion of the training data')
args_parser.add_argument('--train_level',
type=str,
default='word',
choices=['word', 'sent'],
help='Use X-level adversarial training')
args_parser.add_argument('--train_type',
type=str,
default='GAN',
choices=['GR', 'GAN', 'WGAN'],
help='Type of adversarial training')
#
# regarding motivational training
args_parser.add_argument(
'--motivate',
type='bool',
default=False,
help='This is opposite of the adversarial training')
#
args = args_parser.parse_args()
# fix data-prepare seed
random.seed(1234)
np.random.seed(1234)
# model's seed
torch.manual_seed(args.seed)
# if output directory doesn't exist, create it
if not os.path.exists(args.model_path):
os.makedirs(args.model_path)
logger = get_logger("GraphParser")
logger.info('\ncommand-line params : {0}\n'.format(sys.argv[1:]))
logger.info('{0}\n'.format(args))
logger.info("Visible GPUs: %s", str(os.environ["CUDA_VISIBLE_DEVICES"]))
args.parallel = False
if torch.cuda.device_count() > 1:
args.parallel = True
mode = args.mode
obj = args.objective
decoding = args.decode
train_path = args.data_dir + args.src_lang + "_train.debug.1_10.conllu" \
if args.debug else args.data_dir + args.src_lang + '_train.conllu'
dev_path = args.data_dir + args.src_lang + "_dev.conllu"
test_path = args.data_dir + args.src_lang + "_test.conllu"
#
vocab_path = args.vocab_path if args.vocab_path is not None else args.model_path
model_path = args.model_path
model_name = args.model_name
num_epochs = args.num_epochs
batch_size = args.batch_size
hidden_size = args.hidden_size
arc_space = args.arc_space
type_space = args.type_space
num_layers = args.num_layers
num_filters = args.num_filters
learning_rate = args.learning_rate
opt = args.opt
momentum = 0.9
betas = (0.9, 0.9)
eps = args.epsilon
decay_rate = args.decay_rate
clip = args.clip
gamma = args.gamma
schedule = args.schedule
p_rnn = tuple(args.p_rnn)
p_in = args.p_in
p_out = args.p_out
unk_replace = args.unk_replace
punctuation = args.punctuation
freeze = args.freeze
use_word_emb = not args.no_word
word_embedding = args.word_embedding
word_path = args.word_path
use_char = args.char
char_embedding = args.char_embedding
char_path = args.char_path
attn_on_rnn = args.attn_on_rnn
encoder_type = args.encoder_type
if attn_on_rnn:
assert encoder_type == 'RNN'
t_types = (args.adv_training, args.motivate)
t_count = sum(1 for tt in t_types if tt)
if t_count > 1:
assert False, "Only one of: adv_training or motivate can be true"
# ------------------- Loading/initializing embeddings -------------------- #
use_pos = args.pos
pos_dim = args.pos_dim
word_dict, word_dim = utils.load_embedding_dict(word_embedding, word_path)
char_dict = None
char_dim = args.char_dim
if char_embedding != 'random':
char_dict, char_dim = utils.load_embedding_dict(
char_embedding, char_path)
logger.info("Creating Alphabets")
alphabet_path = os.path.join(vocab_path, 'alphabets/')
model_name = os.path.join(model_path, model_name)
# TODO (WARNING): must build vocabs previously
assert os.path.isdir(alphabet_path), "should have build vocabs previously"
word_alphabet, char_alphabet, pos_alphabet, type_alphabet, max_sent_length = conllx_data.create_alphabets(
alphabet_path,
train_path,
data_paths=[dev_path, test_path],
max_vocabulary_size=50000,
embedd_dict=word_dict)
max_sent_length = max(max_sent_length, args.position_embed_num)
num_words = word_alphabet.size()
num_chars = char_alphabet.size()
num_pos = pos_alphabet.size()
num_types = type_alphabet.size()
logger.info("Word Alphabet Size: %d" % num_words)
logger.info("Character Alphabet Size: %d" % num_chars)
logger.info("POS Alphabet Size: %d" % num_pos)
logger.info("Type Alphabet Size: %d" % num_types)
# ------------------------------------------------------------------------- #
# --------------------- Loading/building the model ------------------------ #
logger.info("Reading Data")
use_gpu = torch.cuda.is_available()
def construct_word_embedding_table():
scale = np.sqrt(3.0 / word_dim)
table = np.empty([word_alphabet.size(), word_dim], dtype=np.float32)
table[conllx_data.UNK_ID, :] = np.zeros([1, word_dim]).astype(
np.float32) if freeze else np.random.uniform(
-scale, scale, [1, word_dim]).astype(np.float32)
oov = 0
for word, index in word_alphabet.items():
if word in word_dict:
embedding = word_dict[word]
elif word.lower() in word_dict:
embedding = word_dict[word.lower()]
else:
embedding = np.zeros([1, word_dim]).astype(
np.float32) if freeze else np.random.uniform(
-scale, scale, [1, word_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('word OOV: %d' % oov)
return torch.from_numpy(table)
def construct_char_embedding_table():
if char_dict is None:
return None
scale = np.sqrt(3.0 / char_dim)
table = np.empty([num_chars, char_dim], dtype=np.float32)
table[conllx_data.UNK_ID, :] = np.random.uniform(
-scale, scale, [1, char_dim]).astype(np.float32)
oov = 0
for char, index, in char_alphabet.items():
if char in char_dict:
embedding = char_dict[char]
else:
embedding = np.random.uniform(-scale, scale,
[1, char_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('character OOV: %d' % oov)
return torch.from_numpy(table)
word_table = construct_word_embedding_table() if use_word_emb else None
char_table = construct_char_embedding_table() if use_char else None
def load_model_arguments_from_json():
arguments = json.load(open(pre_model_path, 'r'))
return arguments['args'], arguments['kwargs']
window = 3
if obj == 'cross_entropy':
if args.pre_model_path and args.pre_model_name:
pre_model_name = os.path.join(args.pre_model_path,
args.pre_model_name)
pre_model_path = pre_model_name + '.arg.json'
model_args, kwargs = load_model_arguments_from_json()
network = BiRecurrentConvBiAffine(use_gpu=use_gpu,
*model_args,
**kwargs)
network.load_state_dict(torch.load(pre_model_name))
logger.info("Model reloaded from %s" % pre_model_path)
# Adjust the word embedding layer
if network.embedder.word_embedd is not None:
network.embedder.word_embedd = nn.Embedding(num_words,
word_dim,
_weight=word_table)
else:
network = BiRecurrentConvBiAffine(
word_dim,
num_words,
char_dim,
num_chars,
pos_dim,
num_pos,
num_filters,
window,
mode,
hidden_size,
num_layers,
num_types,
arc_space,
type_space,
embedd_word=word_table,
embedd_char=char_table,
p_in=p_in,
p_out=p_out,
p_rnn=p_rnn,
biaffine=True,
pos=use_pos,
char=use_char,
train_position=args.train_position,
encoder_type=encoder_type,
trans_hid_size=args.trans_hid_size,
d_k=args.d_k,
d_v=args.d_v,
num_head=args.num_head,
enc_use_neg_dist=args.enc_use_neg_dist,
enc_clip_dist=args.enc_clip_dist,
position_dim=args.position_dim,
max_sent_length=max_sent_length,
use_gpu=use_gpu,
use_word_emb=use_word_emb,
input_concat_embeds=args.input_concat_embeds,
input_concat_position=args.input_concat_position,
attn_on_rnn=attn_on_rnn,
partitioned=args.partitioned,
partition_type=args.partition_type,
use_all_encoder_layers=args.use_all_encoder_layers,
use_bert=args.use_bert)
elif obj == 'crf':
raise NotImplementedError
else:
raise RuntimeError('Unknown objective: %s' % obj)
# ------------------------------------------------------------------------- #
# --------------------- Loading data -------------------------------------- #
train_data = dict()
dev_data = dict()
test_data = dict()
num_data = dict()
lang_ids = dict()
reverse_lang_ids = dict()
# ===== the reading =============================================
def _read_one(path, is_train):
lang_id = guess_language_id(path)
logger.info("Reading: guess that the language of file %s is %s." %
(path, lang_id))
one_data = conllx_data.read_data_to_variable(
path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
use_gpu=False,
volatile=(not is_train),
symbolic_root=True,
lang_id=lang_id,
use_bert=args.use_bert,
len_thresh=(args.train_len_thresh if is_train else 100000))
return one_data
data_train = _read_one(train_path, True)
train_data[args.src_lang] = data_train
num_data[args.src_lang] = sum(data_train[1])
lang_ids[args.src_lang] = len(lang_ids)
reverse_lang_ids[lang_ids[args.src_lang]] = args.src_lang
data_dev = _read_one(dev_path, False)
data_test = _read_one(test_path, False)
dev_data[args.src_lang] = data_dev
test_data[args.src_lang] = data_test
# ===============================================================
# ===== reading data for adversarial training ===================
if t_count > 0:
for language in args.aux_lang:
aux_train_path = args.data_dir + language + "_train.debug.1_10.conllu" \
if args.debug else args.data_dir + language + '_train.conllu'
aux_train_data = _read_one(aux_train_path, True)
num_data[language] = sum(aux_train_data[1])
train_data[language] = aux_train_data
lang_ids[language] = len(lang_ids)
reverse_lang_ids[lang_ids[language]] = language
# ===============================================================
punct_set = None
if punctuation is not None:
punct_set = set(punctuation)
logger.info("punctuations(%d): %s" %
(len(punct_set), ' '.join(punct_set)))
def save_args():
arg_path = model_name + '.arg.json'
arguments = [
word_dim, num_words, char_dim, num_chars, pos_dim, num_pos,
num_filters, window, mode, hidden_size, num_layers, num_types,
arc_space, type_space
]
kwargs = {
'p_in': p_in,
'p_out': p_out,
'p_rnn': p_rnn,
'biaffine': True,
'pos': use_pos,
'char': use_char,
'train_position': args.train_position,
'encoder_type': args.encoder_type,
'trans_hid_size': args.trans_hid_size,
'd_k': args.d_k,
'd_v': args.d_v,
'num_head': args.num_head,
'enc_use_neg_dist': args.enc_use_neg_dist,
'enc_clip_dist': args.enc_clip_dist,
'position_dim': args.position_dim,
'max_sent_length': max_sent_length,
'use_word_emb': use_word_emb,
'input_concat_embeds': args.input_concat_embeds,
'input_concat_position': args.input_concat_position,
'attn_on_rnn': attn_on_rnn,
'partitioned': args.partitioned,
'partition_type': args.partition_type,
'use_all_encoder_layers': args.use_all_encoder_layers,
'use_bert': args.use_bert
}
json.dump({
'args': arguments,
'kwargs': kwargs
},
open(arg_path, 'w'),
indent=4)
if use_word_emb and freeze:
freeze_embedding(network.embedder.word_embedd)
if args.parallel:
network = torch.nn.DataParallel(network)
if use_gpu:
network = network.cuda()
save_args()
param_dict = {}
encoder = network.module.encoder if args.parallel else network.encoder
for name, param in encoder.named_parameters():
if param.requires_grad:
param_dict[name] = np.prod(param.size())
total_params = np.sum(list(param_dict.values()))
logger.info('Total Encoder Parameters = %d' % total_params)
# ------------------------------------------------------------------------- #
# =============================================
if args.adv_training:
disc_feat_size = network.module.encoder.output_dim if args.parallel else network.encoder.output_dim
reverse_grad = args.train_type == 'GR'
nclass = len(lang_ids) if args.train_type == 'GR' else 1
kwargs = {
'input_size': disc_feat_size,
'disc_type': args.discriminator,
'train_level': args.train_level,
'train_type': args.train_type,
'reverse_grad': reverse_grad,
'soft_label': True,
'nclass': nclass,
'scale': args.lambdaG,
'use_gpu': use_gpu,
'opt': 'adam',
'lr': 0.001,
'betas': (0.9, 0.999),
'gamma': 0,
'eps': 1e-8,
'momentum': 0,
'clip_disc': args.clip_disc
}
AdvAgent = Adversarial(**kwargs)
if use_gpu:
AdvAgent.cuda()
elif args.motivate:
disc_feat_size = network.module.encoder.output_dim if args.parallel else network.encoder.output_dim
nclass = len(lang_ids)
kwargs = {
'input_size': disc_feat_size,
'disc_type': args.discriminator,
'train_level': args.train_level,
'nclass': nclass,
'scale': args.lambdaG,
'use_gpu': use_gpu,
'opt': 'adam',
'lr': 0.001,
'betas': (0.9, 0.999),
'gamma': 0,
'eps': 1e-8,
'momentum': 0,
'clip_disc': args.clip_disc
}
MtvAgent = Motivator(**kwargs)
if use_gpu:
MtvAgent.cuda()
# =============================================
# --------------------- Initializing the optimizer ------------------------ #
lr = learning_rate
optim = generate_optimizer(opt, lr, network.parameters(), betas, gamma,
eps, momentum)
opt_info = 'opt: %s, ' % opt
if opt == 'adam':
opt_info += 'betas=%s, eps=%.1e' % (betas, eps)
elif opt == 'sgd':
opt_info += 'momentum=%.2f' % momentum
elif opt == 'adamax':
opt_info += 'betas=%s, eps=%.1e' % (betas, eps)
# =============================================
total_data = min(num_data.values())
word_status = 'frozen' if freeze else 'fine tune'
char_status = 'enabled' if use_char else 'disabled'
pos_status = 'enabled' if use_pos else 'disabled'
logger.info(
"Embedding dim: word=%d (%s), char=%d (%s), pos=%d (%s)" %
(word_dim, word_status, char_dim, char_status, pos_dim, pos_status))
logger.info("CNN: filter=%d, kernel=%d" % (num_filters, window))
logger.info(
"RNN: %s, num_layer=%d, hidden=%d, arc_space=%d, type_space=%d" %
(mode, num_layers, hidden_size, arc_space, type_space))
logger.info(
"train: obj: %s, l2: %f, (#data: %d, batch: %d, clip: %.2f, unk replace: %.2f)"
% (obj, gamma, total_data, batch_size, clip, unk_replace))
logger.info("dropout(in, out, rnn): (%.2f, %.2f, %s)" %
(p_in, p_out, p_rnn))
logger.info("decoding algorithm: %s" % decoding)
logger.info(opt_info)
# ------------------------------------------------------------------------- #
# --------------------- Form the mini-batches ----------------------------- #
num_batches = total_data // batch_size + 1
aux_lang = []
if t_count > 0:
for language in args.aux_lang:
aux_lang.extend([language] * num_data[language])
assert num_data[args.src_lang] <= len(aux_lang)
# ------------------------------------------------------------------------- #
dev_ucorrect = 0.0
dev_lcorrect = 0.0
dev_ucomlpete_match = 0.0
dev_lcomplete_match = 0.0
dev_ucorrect_nopunc = 0.0
dev_lcorrect_nopunc = 0.0
dev_ucomlpete_match_nopunc = 0.0
dev_lcomplete_match_nopunc = 0.0
dev_root_correct = 0.0
best_epoch = 0
if decoding == 'greedy':
decode = network.module.decode if args.parallel else network.decode
elif decoding == 'mst':
decode = network.module.decode_mst if args.parallel else network.decode_mst
else:
raise ValueError('Unknown decoding algorithm: %s' % decoding)
patient = 0
decay = 0
max_decay = args.max_decay
double_schedule_decay = args.double_schedule_decay
# lrate schedule
step_num = 0
use_warmup_schedule = args.use_warmup_schedule
if use_warmup_schedule:
logger.info("Use warmup lrate for the first epoch, from 0 up to %s." %
(lr, ))
skip_adv_tuning = 0
loss_fn = network.module.loss if args.parallel else network.loss
for epoch in range(1, num_epochs + 1):
print(
'Epoch %d (%s, optim: %s, learning rate=%.6f, eps=%.1e, decay rate=%.2f (schedule=%d, patient=%d, decay=%d)): '
%
(epoch, mode, opt, lr, eps, decay_rate, schedule, patient, decay))
train_err = 0.
train_err_arc = 0.
train_err_type = 0.
train_total = 0.
start_time = time.time()
num_back = 0
skip_adv_tuning += 1
loss_d_real, loss_d_fake = [], []
acc_d_real, acc_d_fake, = [], []
gen_loss, parsing_loss = [], []
disent_loss = []
if t_count > 0 and skip_adv_tuning > args.delay:
batch_size = args.batch_size // 2
num_batches = total_data // batch_size + 1
# ---------------------- Sample the mini-batches -------------------------- #
if t_count > 0:
sampled_aux_lang = random.sample(aux_lang, num_batches)
lang_in_batch = [(args.src_lang, sampled_aux_lang[k])
for k in range(num_batches)]
else:
lang_in_batch = [(args.src_lang, None) for _ in range(num_batches)]
assert len(lang_in_batch) == num_batches
# ------------------------------------------------------------------------- #
network.train()
warmup_factor = (lr + 0.) / num_batches
for batch in range(1, num_batches + 1):
update_generator = True
update_discriminator = False
# lrate schedule (before each step)
step_num += 1
if use_warmup_schedule and epoch <= 1:
cur_lrate = warmup_factor * step_num
# set lr
for param_group in optim.param_groups:
param_group['lr'] = cur_lrate
# considering source language as real and auxiliary languages as fake
real_lang, fake_lang = lang_in_batch[batch - 1]
real_idx, fake_idx = lang_ids.get(real_lang), lang_ids.get(
fake_lang, -1)
#
word, char, pos, heads, types, masks, lengths, bert_inputs = conllx_data.get_batch_variable(
train_data[real_lang], batch_size, unk_replace=unk_replace)
if use_gpu:
word = word.cuda()
char = char.cuda()
pos = pos.cuda()
heads = heads.cuda()
types = types.cuda()
masks = masks.cuda()
lengths = lengths.cuda()
if bert_inputs[0] is not None:
bert_inputs[0] = bert_inputs[0].cuda()
bert_inputs[1] = bert_inputs[1].cuda()
bert_inputs[2] = bert_inputs[2].cuda()
real_enc = network(word,
char,
pos,
input_bert=bert_inputs,
mask=masks,
length=lengths,
hx=None)
# ========== Update the discriminator ==========
if t_count > 0 and skip_adv_tuning > args.delay:
# fake examples = 0
word_f, char_f, pos_f, heads_f, types_f, masks_f, lengths_f, bert_inputs = conllx_data.get_batch_variable(
train_data[fake_lang], batch_size, unk_replace=unk_replace)
if use_gpu:
word_f = word_f.cuda()
char_f = char_f.cuda()
pos_f = pos_f.cuda()
heads_f = heads_f.cuda()
types_f = types_f.cuda()
masks_f = masks_f.cuda()
lengths_f = lengths_f.cuda()
if bert_inputs[0] is not None:
bert_inputs[0] = bert_inputs[0].cuda()
bert_inputs[1] = bert_inputs[1].cuda()
bert_inputs[2] = bert_inputs[2].cuda()
fake_enc = network(word_f,
char_f,
pos_f,
input_bert=bert_inputs,
mask=masks_f,
length=lengths_f,
hx=None)
# TODO: temporary crack
if t_count > 0 and skip_adv_tuning > args.delay:
# skip discriminator training for '|n_critic|' iterations if 'n_critic' < 0
if args.n_critic > 0 or (batch - 1) % (-1 *
args.n_critic) == 0:
update_discriminator = True
if update_discriminator:
if args.adv_training:
real_loss, fake_loss, real_acc, fake_acc = AdvAgent.update(
real_enc['output'].detach(),
fake_enc['output'].detach(), real_idx, fake_idx)
loss_d_real.append(real_loss)
loss_d_fake.append(fake_loss)
acc_d_real.append(real_acc)
acc_d_fake.append(fake_acc)
elif args.motivate:
real_loss, fake_loss, real_acc, fake_acc = MtvAgent.update(
real_enc['output'].detach(),
fake_enc['output'].detach(), real_idx, fake_idx)
loss_d_real.append(real_loss)
loss_d_fake.append(fake_loss)
acc_d_real.append(real_acc)
acc_d_fake.append(fake_acc)
else:
raise NotImplementedError()
if args.n_critic > 0 and (batch - 1) % args.n_critic != 0:
update_generator = False
# ==============================================
# =========== Update the generator =============
if update_generator:
others_loss = None
if args.adv_training and skip_adv_tuning > args.delay:
# for GAN: L_G= L_parsing - (lambda_G * L_D)
# for GR : L_G= L_parsing + L_D
others_loss = AdvAgent.gen_loss(real_enc['output'],
fake_enc['output'],
real_idx, fake_idx)
gen_loss.append(others_loss.item())
elif args.motivate and skip_adv_tuning > args.delay:
others_loss = MtvAgent.gen_loss(real_enc['output'],
fake_enc['output'],
real_idx, fake_idx)
gen_loss.append(others_loss.item())
optim.zero_grad()
loss_arc, loss_type = loss_fn(real_enc['output'],
heads,
types,
mask=masks,
length=lengths)
loss = loss_arc + loss_type
num_inst = word.size(
0) if obj == 'crf' else masks.sum() - word.size(0)
train_err += loss.item() * num_inst
train_err_arc += loss_arc.item() * num_inst
train_err_type += loss_type.item() * num_inst
train_total += num_inst
parsing_loss.append(loss.item())
if others_loss is not None:
loss = loss + others_loss
loss.backward()
clip_grad_norm_(network.parameters(), clip)
optim.step()
time_ave = (time.time() - start_time) / batch
time_left = (num_batches - batch) * time_ave
if (args.adv_training
or args.motivate) and skip_adv_tuning > args.delay:
logger.info(
'epoch: %d train: %d loss: %.4f, arc: %.4f, type: %.4f, dis_loss: (%.2f, %.2f), dis_acc: (%.2f, %.2f), '
'gen_loss: %.2f, time: %.2fs' %
(epoch, num_batches, train_err / train_total,
train_err_arc / train_total, train_err_type / train_total,
sum(loss_d_real) / len(loss_d_real), sum(loss_d_fake) /
len(loss_d_fake), sum(acc_d_real) / len(acc_d_real),
sum(acc_d_fake) / len(acc_d_fake),
sum(gen_loss) / len(gen_loss), time.time() - start_time))
else:
logger.info(
'epoch: %d train: %d loss: %.4f, arc: %.4f, type: %.4f, time: %.2fs'
% (epoch, num_batches, train_err / train_total,
train_err_arc / train_total, train_err_type / train_total,
time.time() - start_time))
################# Validation on Dependency Parsing Only #################################
if epoch % args.check_dev != 0:
continue
with torch.no_grad():
# evaluate performance on dev data
network.eval()
dev_ucorr = 0.0
dev_lcorr = 0.0
dev_total = 0
dev_ucomlpete = 0.0
dev_lcomplete = 0.0
dev_ucorr_nopunc = 0.0
dev_lcorr_nopunc = 0.0
dev_total_nopunc = 0
dev_ucomlpete_nopunc = 0.0
dev_lcomplete_nopunc = 0.0
dev_root_corr = 0.0
dev_total_root = 0.0
dev_total_inst = 0.0
for lang, data_dev in dev_data.items():
for batch in conllx_data.iterate_batch_variable(
data_dev, batch_size):
word, char, pos, heads, types, masks, lengths, bert_inputs = batch
if use_gpu:
word = word.cuda()
char = char.cuda()
pos = pos.cuda()
heads = heads.cuda()
types = types.cuda()
masks = masks.cuda()
lengths = lengths.cuda()
if bert_inputs[0] is not None:
bert_inputs[0] = bert_inputs[0].cuda()
bert_inputs[1] = bert_inputs[1].cuda()
bert_inputs[2] = bert_inputs[2].cuda()
heads_pred, types_pred = decode(
word,
char,
pos,
input_bert=bert_inputs,
mask=masks,
length=lengths,
leading_symbolic=conllx_data.NUM_SYMBOLIC_TAGS)
word = word.cpu().numpy()
pos = pos.cpu().numpy()
lengths = lengths.cpu().numpy()
heads = heads.cpu().numpy()
types = types.cpu().numpy()
stats, stats_nopunc, stats_root, num_inst = parser.eval(
word,
pos,
heads_pred,
types_pred,
heads,
types,
word_alphabet,
pos_alphabet,
lengths,
punct_set=punct_set,
symbolic_root=True)
ucorr, lcorr, total, ucm, lcm = stats
ucorr_nopunc, lcorr_nopunc, total_nopunc, ucm_nopunc, lcm_nopunc = stats_nopunc
corr_root, total_root = stats_root
dev_ucorr += ucorr
dev_lcorr += lcorr
dev_total += total
dev_ucomlpete += ucm
dev_lcomplete += lcm
dev_ucorr_nopunc += ucorr_nopunc
dev_lcorr_nopunc += lcorr_nopunc
dev_total_nopunc += total_nopunc
dev_ucomlpete_nopunc += ucm_nopunc
dev_lcomplete_nopunc += lcm_nopunc
dev_root_corr += corr_root
dev_total_root += total_root
dev_total_inst += num_inst
print(
'W. Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%%'
% (dev_ucorr, dev_lcorr, dev_total, dev_ucorr * 100 /
dev_total, dev_lcorr * 100 / dev_total, dev_ucomlpete *
100 / dev_total_inst, dev_lcomplete * 100 / dev_total_inst))
print(
'Wo Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%%'
%
(dev_ucorr_nopunc, dev_lcorr_nopunc, dev_total_nopunc,
dev_ucorr_nopunc * 100 / dev_total_nopunc, dev_lcorr_nopunc *
100 / dev_total_nopunc, dev_ucomlpete_nopunc * 100 /
dev_total_inst, dev_lcomplete_nopunc * 100 / dev_total_inst))
print('Root: corr: %d, total: %d, acc: %.2f%%' %
(dev_root_corr, dev_total_root,
dev_root_corr * 100 / dev_total_root))
if dev_lcorrect_nopunc < dev_lcorr_nopunc or (
dev_lcorrect_nopunc == dev_lcorr_nopunc
and dev_ucorrect_nopunc < dev_ucorr_nopunc):
dev_ucorrect_nopunc = dev_ucorr_nopunc
dev_lcorrect_nopunc = dev_lcorr_nopunc
dev_ucomlpete_match_nopunc = dev_ucomlpete_nopunc
dev_lcomplete_match_nopunc = dev_lcomplete_nopunc
dev_ucorrect = dev_ucorr
dev_lcorrect = dev_lcorr
dev_ucomlpete_match = dev_ucomlpete
dev_lcomplete_match = dev_lcomplete
dev_root_correct = dev_root_corr
best_epoch = epoch
patient = 0
state_dict = network.module.state_dict(
) if args.parallel else network.state_dict()
torch.save(state_dict, model_name)
else:
if dev_ucorr_nopunc * 100 / dev_total_nopunc < dev_ucorrect_nopunc * 100 / dev_total_nopunc - 5 or patient >= schedule:
state_dict = torch.load(model_name)
if args.parallel:
network.module.load_state_dict(state_dict)
else:
network.load_state_dict(state_dict)
lr = lr * decay_rate
optim = generate_optimizer(opt, lr, network.parameters(),
betas, gamma, eps, momentum)
if decoding == 'greedy':
decode = network.module.decode if args.parallel else network.decode
elif decoding == 'mst':
decode = network.module.decode_mst if args.parallel else network.decode_mst
else:
raise ValueError('Unknown decoding algorithm: %s' %
decoding)
patient = 0
decay += 1
if decay % double_schedule_decay == 0:
schedule *= 2
else:
patient += 1
print(
'----------------------------------------------------------------------------------------------------------------------------'
)
print(
'best dev W. Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)'
% (dev_ucorrect, dev_lcorrect, dev_total, dev_ucorrect * 100 /
dev_total, dev_lcorrect * 100 / dev_total,
dev_ucomlpete_match * 100 / dev_total_inst,
dev_lcomplete_match * 100 / dev_total_inst, best_epoch))
print(
'best dev Wo Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)'
% (dev_ucorrect_nopunc, dev_lcorrect_nopunc, dev_total_nopunc,
dev_ucorrect_nopunc * 100 / dev_total_nopunc,
dev_lcorrect_nopunc * 100 / dev_total_nopunc,
dev_ucomlpete_match_nopunc * 100 / dev_total_inst,
dev_lcomplete_match_nopunc * 100 / dev_total_inst,
best_epoch))
print(
'best dev Root: corr: %d, total: %d, acc: %.2f%% (epoch: %d)'
% (dev_root_correct, dev_total_root,
dev_root_correct * 100 / dev_total_root, best_epoch))
print(
'----------------------------------------------------------------------------------------------------------------------------'
)
if decay == max_decay:
break
torch.cuda.empty_cache() # release memory that can be released
def main():
parser = argparse.ArgumentParser(
description='Tuning with bi-directional RNN-CNN-CRF')
parser.add_argument('--mode',
choices=['RNN', 'LSTM', 'GRU'],
help='architecture of rnn',
required=True)
parser.add_argument('--num_epochs',
type=int,
default=1000,
help='Number of training epochs')
parser.add_argument('--batch_size',
type=int,
default=16,
help='Number of sentences in each batch')
parser.add_argument('--hidden_size',
type=int,
default=128,
help='Number of hidden units in RNN')
parser.add_argument('--num_filters',
type=int,
default=30,
help='Number of filters in CNN')
parser.add_argument('--char_dim',
type=int,
default=30,
help='Dimension of Character embeddings')
parser.add_argument('--learning_rate',
type=float,
default=0.01,
help='Learning rate')
parser.add_argument('--decay_rate',
type=float,
default=0.1,
help='Decay rate of learning rate')
parser.add_argument('--gamma',
type=float,
default=0.0,
help='weight for regularization')
parser.add_argument('--dropout',
choices=['std', 'variational'],
help='type of dropout',
required=True)
parser.add_argument('--p', type=float, default=0.5, help='dropout rate')
parser.add_argument('--bigram',
action='store_true',
help='bi-gram parameter for CRF')
parser.add_argument('--schedule',
type=int,
help='schedule for learning rate decay')
parser.add_argument('--unk_replace',
type=float,
default=0.,
help='The rate to replace a singleton word with UNK')
parser.add_argument(
'--train') # "data/POS-penn/wsj/split1/wsj1.train.original"
parser.add_argument(
'--dev') # "data/POS-penn/wsj/split1/wsj1.dev.original"
parser.add_argument(
'--test') # "data/POS-penn/wsj/split1/wsj1.test.original"
args = parser.parse_args()
logger = get_logger("POSCRFTagger")
mode = args.mode
train_path = args.train
dev_path = args.dev
test_path = args.test
num_epochs = args.num_epochs
batch_size = args.batch_size
hidden_size = args.hidden_size
num_filters = args.num_filters
learning_rate = args.learning_rate
momentum = 0.9
decay_rate = args.decay_rate
gamma = args.gamma
schedule = args.schedule
p = args.p
unk_replace = args.unk_replace
bigram = args.bigram
embedd_dict, embedd_dim = utils.load_embedding_dict(
'glove', "data/glove/glove.6B/glove.6B.100d.gz")
logger.info("Creating Alphabets")
word_alphabet, char_alphabet, pos_alphabet, \
type_alphabet = conllx_data.create_alphabets("data/alphabets/pos_crf/", train_path,
data_paths=[dev_path, test_path],
max_vocabulary_size=50000, embedd_dict=embedd_dict)
logger.info("Word Alphabet Size: %d" % word_alphabet.size())
logger.info("Character Alphabet Size: %d" % char_alphabet.size())
logger.info("POS Alphabet Size: %d" % pos_alphabet.size())
logger.info("Reading Data")
use_gpu = torch.cuda.is_available()
data_train = conllx_data.read_data_to_variable(train_path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
use_gpu=use_gpu)
# data_train = conllx_data.read_data(train_path, word_alphabet, char_alphabet, pos_alphabet, type_alphabet)
# num_data = sum([len(bucket) for bucket in data_train])
num_data = sum(data_train[1])
num_labels = pos_alphabet.size()
data_dev = conllx_data.read_data_to_variable(dev_path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
use_gpu=use_gpu,
volatile=True)
data_test = conllx_data.read_data_to_variable(test_path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
use_gpu=use_gpu,
volatile=True)
def construct_word_embedding_table():
scale = np.sqrt(3.0 / embedd_dim)
table = np.empty([word_alphabet.size(), embedd_dim], dtype=np.float32)
table[conllx_data.UNK_ID, :] = np.random.uniform(
-scale, scale, [1, embedd_dim]).astype(np.float32)
oov = 0
for word, index in word_alphabet.items():
if word in embedd_dict:
embedding = embedd_dict[word]
elif word.lower() in embedd_dict:
embedding = embedd_dict[word.lower()]
else:
embedding = np.random.uniform(
-scale, scale, [1, embedd_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('oov: %d' % oov)
return torch.from_numpy(table)
word_table = construct_word_embedding_table()
logger.info("constructing network...")
char_dim = args.char_dim
window = 3
num_layers = 1
if args.dropout == 'std':
network = BiRecurrentConvCRF(embedd_dim,
word_alphabet.size(),
char_dim,
char_alphabet.size(),
num_filters,
window,
mode,
hidden_size,
num_layers,
num_labels,
embedd_word=word_table,
p_rnn=p,
bigram=bigram)
else:
raise NotImplementedError
if use_gpu:
network.cuda()
lr = learning_rate
optim = SGD(network.parameters(),
lr=lr,
momentum=momentum,
weight_decay=gamma)
logger.info("Network: %s, num_layer=%d, hidden=%d, filter=%d, crf=%s" %
(mode, num_layers, hidden_size, num_filters,
'bigram' if bigram else 'unigram'))
logger.info(
"training: l2: %f, (#training data: %d, batch: %d, dropout: %.2f, unk replace: %.2f)"
% (gamma, num_data, batch_size, p, unk_replace))
num_batches = num_data / batch_size + 1
dev_correct = 0.0
best_epoch = 0
test_correct = 0.0
test_total = 0
for epoch in range(1, num_epochs + 1):
print(
'Epoch %d (%s(%s), learning rate=%.4f, decay rate=%.4f (schedule=%d)): '
% (epoch, mode, args.dropout, lr, decay_rate, schedule))
train_err = 0.
train_total = 0.
start_time = time.time()
num_back = 0
network.train()
for batch in range(1, num_batches + 1):
word, char, labels, _, _, masks, lengths = conllx_data.get_batch_variable(
data_train, batch_size, unk_replace=unk_replace)
optim.zero_grad()
loss = network.loss(word, char, labels, mask=masks)
loss.backward()
optim.step()
num_inst = word.size(0)
train_err += loss.data[0] * num_inst
train_total += num_inst
time_ave = (time.time() - start_time) / batch
time_left = (num_batches - batch) * time_ave
# update log
if batch % 100 == 0:
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
log_info = 'train: %d/%d loss: %.4f, time left (estimated): %.2fs' % (
batch, num_batches, train_err / train_total, time_left)
sys.stdout.write(log_info)
sys.stdout.flush()
num_back = len(log_info)
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
print('train: %d loss: %.4f, time: %.2fs' %
(num_batches, train_err / train_total, time.time() - start_time))
# evaluate performance on dev data
network.eval()
dev_corr = 0.0
dev_total = 0
for batch in conllx_data.iterate_batch_variable(data_dev, batch_size):
word, char, labels, _, _, masks, lengths = batch
preds, corr = network.decode(
word,
char,
target=labels,
mask=masks,
leading_symbolic=conllx_data.NUM_SYMBOLIC_TAGS)
num_tokens = masks.data.sum()
dev_corr += corr
dev_total += num_tokens
print('dev corr: %d, total: %d, acc: %.2f%%' %
(dev_corr, dev_total, dev_corr * 100 / dev_total))
if dev_correct < dev_corr:
dev_correct = dev_corr
best_epoch = epoch
# evaluate on test data when better performance detected
test_corr = 0.0
test_total = 0
for batch in conllx_data.iterate_batch_variable(
data_test, batch_size):
word, char, labels, _, _, masks, lengths = batch
preds, corr = network.decode(
word,
char,
target=labels,
mask=masks,
leading_symbolic=conllx_data.NUM_SYMBOLIC_TAGS)
num_tokens = masks.data.sum()
test_corr += corr
test_total += num_tokens
test_correct = test_corr
print("best dev corr: %d, total: %d, acc: %.2f%% (epoch: %d)" %
(dev_correct, dev_total, dev_correct * 100 / dev_total,
best_epoch))
print("best test corr: %d, total: %d, acc: %.2f%% (epoch: %d)" %
(test_correct, test_total, test_correct * 100 / test_total,
best_epoch))
if epoch % schedule == 0:
lr = learning_rate / (1.0 + epoch * decay_rate)
optim = SGD(network.parameters(),
lr=lr,
momentum=momentum,
weight_decay=gamma,
nesterov=True)
def main():
parser = argparse.ArgumentParser(
description='Tuning with Multitask bi-directional RNN-CNN-CRF')
parser.add_argument('--config',
help='Config file (Python file format)',
default="config_multitask.py")
parser.add_argument('--grid', help='Grid Search Options', default="{}")
args = parser.parse_args()
logger = get_logger("Multi-Task")
use_gpu = torch.cuda.is_available()
# Config Tensorboard Writer
log_writer = SummaryWriter()
# Load from config file
spec = importlib.util.spec_from_file_location("config", args.config)
config_module = importlib.util.module_from_spec(spec)
spec.loader.exec_module(config_module)
config = config_module.entries
# Load options from grid search
options = eval(args.grid)
for k, v in options.items():
if isinstance(v, six.string_types):
cmd = "%s = \"%s\"" % (k, v)
else:
cmd = "%s = %s" % (k, v)
log_writer.add_scalar(k, v, 1)
exec(cmd)
# Load embedding dict
embedding = config.embedding.embedding_type
embedding_path = config.embedding.embedding_dict
embedd_dict, embedd_dim = utils.load_embedding_dict(
embedding, embedding_path)
# Collect data path
data_dir = config.data.data_dir
data_names = config.data.data_names
train_paths = [
os.path.join(data_dir, data_name, "train.tsv")
for data_name in data_names
]
dev_paths = [
os.path.join(data_dir, data_name, "devel.tsv")
for data_name in data_names
]
test_paths = [
os.path.join(data_dir, data_name, "test.tsv")
for data_name in data_names
]
# Create alphabets
logger.info("Creating Alphabets")
if not os.path.exists('tmp'):
os.mkdir('tmp')
word_alphabet, char_alphabet, pos_alphabet, chunk_alphabet, ner_alphabet, ner_alphabet_task, label_reflect = \
bionlp_data.create_alphabets(os.path.join(Path(data_dir).abspath(), "alphabets", "_".join(data_names)), train_paths,
data_paths=dev_paths + test_paths, use_cache=True,
embedd_dict=embedd_dict, max_vocabulary_size=50000)
logger.info("Word Alphabet Size: %d" % word_alphabet.size())
logger.info("Character Alphabet Size: %d" % char_alphabet.size())
logger.info("POS Alphabet Size: %d" % pos_alphabet.size())
logger.info("Chunk Alphabet Size: %d" % chunk_alphabet.size())
logger.info("NER Alphabet Size: %d" % ner_alphabet.size())
logger.info(
"NER Alphabet Size per Task: %s",
str([task_alphabet.size() for task_alphabet in ner_alphabet_task]))
#task_reflects = torch.LongTensor(reverse_reflect(label_reflect, ner_alphabet.size()))
#if use_gpu:
# task_reflects = task_reflects.cuda()
if embedding == 'elmo':
logger.info("Loading ELMo Embedder")
ee = ElmoEmbedder(options_file=config.embedding.elmo_option,
weight_file=config.embedding.elmo_weight,
cuda_device=config.embedding.elmo_cuda)
else:
ee = None
logger.info("Reading Data")
# Prepare dataset
data_trains = [
bionlp_data.read_data_to_variable(train_path,
word_alphabet,
char_alphabet,
pos_alphabet,
chunk_alphabet,
ner_alphabet_task[task_id],
use_gpu=use_gpu,
elmo_ee=ee)
for task_id, train_path in enumerate(train_paths)
]
num_data = [sum(data_train[1]) for data_train in data_trains]
num_labels = ner_alphabet.size()
num_labels_task = [task_item.size() for task_item in ner_alphabet_task]
data_devs = [
bionlp_data.read_data_to_variable(dev_path,
word_alphabet,
char_alphabet,
pos_alphabet,
chunk_alphabet,
ner_alphabet_task[task_id],
use_gpu=use_gpu,
volatile=True,
elmo_ee=ee)
for task_id, dev_path in enumerate(dev_paths)
]
data_tests = [
bionlp_data.read_data_to_variable(test_path,
word_alphabet,
char_alphabet,
pos_alphabet,
chunk_alphabet,
ner_alphabet_task[task_id],
use_gpu=use_gpu,
volatile=True,
elmo_ee=ee)
for task_id, test_path in enumerate(test_paths)
]
writer = BioNLPWriter(word_alphabet, char_alphabet, pos_alphabet,
chunk_alphabet, ner_alphabet)
def construct_word_embedding_table():
scale = np.sqrt(3.0 / embedd_dim)
table = np.empty([word_alphabet.size(), embedd_dim], dtype=np.float32)
table[bionlp_data.UNK_ID, :] = np.random.uniform(
-scale, scale, [1, embedd_dim]).astype(np.float32)
oov = 0
for word, index in word_alphabet.items():
if not embedd_dict == None and word in embedd_dict:
embedding = embedd_dict[word]
elif not embedd_dict == None and word.lower() in embedd_dict:
embedding = embedd_dict[word.lower()]
else:
embedding = np.random.uniform(
-scale, scale, [1, embedd_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('oov: %d' % oov)
return torch.from_numpy(table)
word_table = construct_word_embedding_table()
logger.info("constructing network...")
# Construct network
window = 3
num_layers = 1
mode = config.rnn.mode
hidden_size = config.rnn.hidden_size
char_dim = config.rnn.char_dim
num_filters = config.rnn.num_filters
tag_space = config.rnn.tag_space
bigram = config.rnn.bigram
attention_mode = config.rnn.attention
if config.rnn.dropout == 'std':
network = MultiTaskBiRecurrentCRF(
len(data_trains),
embedd_dim,
word_alphabet.size(),
char_dim,
char_alphabet.size(),
num_filters,
window,
mode,
hidden_size,
num_layers,
num_labels,
num_labels_task=num_labels_task,
tag_space=tag_space,
embedd_word=word_table,
p_in=config.rnn.p,
p_rnn=config.rnn.p,
bigram=bigram,
elmo=(embedding == 'elmo'),
attention_mode=attention_mode,
adv_loss_coef=config.multitask.adv_loss_coef,
diff_loss_coef=config.multitask.diff_loss_coef,
char_level_rnn=config.rnn.char_level_rnn)
else:
raise NotImplementedError
if use_gpu:
network.cuda()
# Prepare training
unk_replace = config.embedding.unk_replace
num_epochs = config.training.num_epochs
batch_size = config.training.batch_size
lr = config.training.learning_rate
momentum = config.training.momentum
alpha = config.training.alpha
lr_decay = config.training.lr_decay
schedule = config.training.schedule
gamma = config.training.gamma
# optim = SGD(network.parameters(), lr=lr, momentum=momentum, weight_decay=gamma, nesterov=True)
optim = RMSprop(network.parameters(),
lr=lr,
alpha=alpha,
momentum=momentum,
weight_decay=gamma)
logger.info(
"Network: %s, num_layer=%d, hidden=%d, filter=%d, tag_space=%d, crf=%s"
% (mode, num_layers, hidden_size, num_filters, tag_space,
'bigram' if bigram else 'unigram'))
logger.info(
"training: l2: %f, (#training data: %s, batch: %d, dropout: %.2f, unk replace: %.2f)"
% (gamma, num_data, batch_size, config.rnn.p, unk_replace))
num_batches = [x // batch_size + 1 for x in num_data]
dev_f1 = [0.0 for x in num_data]
dev_acc = [0.0 for x in num_data]
dev_precision = [0.0 for x in num_data]
dev_recall = [0.0 for x in num_data]
test_f1 = [0.0 for x in num_data]
test_acc = [0.0 for x in num_data]
test_precision = [0.0 for x in num_data]
test_recall = [0.0 for x in num_data]
best_epoch = [0 for x in num_data]
# Training procedure
for epoch in range(1, num_epochs + 1):
print(
'Epoch %d (%s(%s), learning rate=%.4f, decay rate=%.4f (schedule=%d)): '
% (epoch, mode, config.rnn.dropout, lr, lr_decay, schedule))
train_err = 0.
train_total = 0.
# Gradient decent on training data
start_time = time.time()
num_back = 0
network.train()
batch_count = 0
for batch in range(1, 2 * num_batches[0] + 1):
r = random.random()
task_id = 0 if r <= 0.5 else random.randint(1, len(num_data) - 1)
#if batch > num_batches[task_id]:
# batch = batch % num_batches[task_id] + 1
batch_count += 1
word, char, _, _, labels, masks, lengths, elmo_embedding = bionlp_data.get_batch_variable(
data_trains[task_id], batch_size, unk_replace=unk_replace)
optim.zero_grad()
loss, task_loss, adv_loss, diff_loss = network.loss(
task_id,
word,
char,
labels,
mask=masks,
elmo_word=elmo_embedding)
#log_writer.add_scalars(
# 'train_loss_task' + str(task_id),
# {'all_loss': loss, 'task_loss': task_loss, 'adv_loss': adv_loss, 'diff_loss': diff_loss},
# (epoch - 1) * (num_batches[task_id] + 1) + batch
#)
#log_writer.add_scalars(
# 'train_loss_overview',
# {'all_loss': loss, 'task_loss': task_loss, 'adv_loss': adv_loss, 'diff_loss': diff_loss},
# (epoch - 1) * (sum(num_batches) + 1) + batch_count
#)
loss.backward()
clip_grad_norm(network.parameters(), 5.0)
optim.step()
num_inst = word.size(0)
train_err += loss.data[0] * num_inst
train_total += num_inst
time_ave = (time.time() - start_time) / batch
time_left = (2 * num_batches[0] - batch) * time_ave
# update log
if batch % 100 == 0:
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
log_info = 'train: %d/%d loss: %.4f, time left (estimated): %.2fs' % (
batch, 2 * num_batches[0], train_err / train_total,
time_left)
sys.stdout.write(log_info)
sys.stdout.flush()
num_back = len(log_info)
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
print('train: %d loss: %.4f, time: %.2fs' %
(2 * num_batches[0], train_err / train_total,
time.time() - start_time))
# Evaluate performance on dev data
network.eval()
for task_id in range(len(num_batches)):
tmp_filename = 'tmp/%s_dev%d%d' % (str(uid), epoch, task_id)
writer.start(tmp_filename)
for batch in bionlp_data.iterate_batch_variable(
data_devs[task_id], batch_size):
word, char, pos, chunk, labels, masks, lengths, elmo_embedding = batch
preds, _ = network.decode(
task_id,
word,
char,
target=labels,
mask=masks,
leading_symbolic=bionlp_data.NUM_SYMBOLIC_TAGS,
elmo_word=elmo_embedding)
writer.write(word.data.cpu().numpy(),
pos.data.cpu().numpy(),
chunk.data.cpu().numpy(),
preds.cpu().numpy(),
labels.data.cpu().numpy(),
lengths.cpu().numpy())
writer.close()
acc, precision, recall, f1 = evaluate(tmp_filename)
log_writer.add_scalars(
'dev_task' + str(task_id), {
'accuracy': acc,
'precision': precision,
'recall': recall,
'f1': f1
}, epoch)
print(
'dev acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%%'
% (acc, precision, recall, f1))
if dev_f1[task_id] < f1:
dev_f1[task_id] = f1
dev_acc[task_id] = acc
dev_precision[task_id] = precision
dev_recall[task_id] = recall
best_epoch[task_id] = epoch
# Evaluate on test data when better performance detected
tmp_filename = 'tmp/%s_test%d%d' % (str(uid), epoch, task_id)
writer.start(tmp_filename)
for batch in bionlp_data.iterate_batch_variable(
data_tests[task_id], batch_size):
word, char, pos, chunk, labels, masks, lengths, elmo_embedding = batch
preds, _ = network.decode(
task_id,
word,
char,
target=labels,
mask=masks,
leading_symbolic=bionlp_data.NUM_SYMBOLIC_TAGS,
elmo_word=elmo_embedding)
writer.write(word.data.cpu().numpy(),
pos.data.cpu().numpy(),
chunk.data.cpu().numpy(),
preds.cpu().numpy(),
labels.data.cpu().numpy(),
lengths.cpu().numpy())
writer.close()
test_acc[task_id], test_precision[task_id], test_recall[
task_id], test_f1[task_id] = evaluate(tmp_filename)
log_writer.add_scalars(
'test_task' + str(task_id), {
'accuracy': test_acc[task_id],
'precision': test_precision[task_id],
'recall': test_recall[task_id],
'f1': test_f1[task_id]
}, epoch)
print(
"================================================================================"
)
print("dataset: %s" % data_names[task_id])
print(
"best dev acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)"
% (dev_acc[task_id], dev_precision[task_id],
dev_recall[task_id], dev_f1[task_id], best_epoch[task_id]))
print(
"best test acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)"
%
(test_acc[task_id], test_precision[task_id],
test_recall[task_id], test_f1[task_id], best_epoch[task_id]))
print(
"================================================================================\n"
)
if epoch % schedule == 0:
# lr = learning_rate / (1.0 + epoch * lr_decay)
# optim = SGD(network.parameters(), lr=lr, momentum=momentum, weight_decay=gamma, nesterov=True)
lr = lr * lr_decay
optim.param_groups[0]['lr'] = lr
# writer.export_scalars_to_json("./all_scalars.json")
writer.close()
def main():
args_parser = argparse.ArgumentParser(
description='Tuning with stack pointer parser')
args_parser.add_argument('--mode',
choices=['RNN', 'LSTM', 'GRU', 'FastLSTM'],
help='architecture of rnn',
required=True)
args_parser.add_argument('--num_epochs',
type=int,
default=200,
help='Number of training epochs')
args_parser.add_argument('--batch_size',
type=int,
default=64,
help='Number of sentences in each batch')
args_parser.add_argument('--hidden_size',
type=int,
default=256,
help='Number of hidden units in RNN')
args_parser.add_argument('--arc_space',
type=int,
default=128,
help='Dimension of tag space')
args_parser.add_argument('--type_space',
type=int,
default=128,
help='Dimension of tag space')
args_parser.add_argument('--num_layers',
type=int,
default=1,
help='Number of layers of RNN')
args_parser.add_argument('--num_filters',
type=int,
default=50,
help='Number of filters in CNN')
args_parser.add_argument('--pos_dim',
type=int,
default=50,
help='Dimension of POS embeddings')
args_parser.add_argument('--char_dim',
type=int,
default=50,
help='Dimension of Character embeddings')
args_parser.add_argument('--opt',
choices=['adam', 'sgd', 'adadelta'],
help='optimization algorithm')
args_parser.add_argument('--learning_rate',
type=float,
default=0.001,
help='Learning rate')
args_parser.add_argument('--decay_rate',
type=float,
default=0.5,
help='Decay rate of learning rate')
args_parser.add_argument('--clip',
type=float,
default=5.0,
help='gradient clipping')
args_parser.add_argument('--gamma',
type=float,
default=0.0,
help='weight for regularization')
args_parser.add_argument('--coverage',
type=float,
default=0.0,
help='weight for coverage loss')
args_parser.add_argument('--p_rnn',
nargs=2,
type=float,
required=True,
help='dropout rate for RNN')
args_parser.add_argument('--p_in',
type=float,
default=0.33,
help='dropout rate for input embeddings')
args_parser.add_argument('--p_out',
type=float,
default=0.33,
help='dropout rate for output layer')
args_parser.add_argument(
'--prior_order',
choices=['inside_out', 'left2right', 'deep_first', 'shallow_first'],
help='prior order of children.',
required=True)
args_parser.add_argument('--schedule',
type=int,
help='schedule for learning rate decay')
args_parser.add_argument(
'--unk_replace',
type=float,
default=0.,
help='The rate to replace a singleton word with UNK')
args_parser.add_argument('--punctuation',
nargs='+',
type=str,
help='List of punctuations')
args_parser.add_argument('--beam',
type=int,
default=1,
help='Beam size for decoding')
args_parser.add_argument('--word_embedding',
choices=['glove', 'senna', 'sskip', 'polyglot'],
help='Embedding for words',
required=True)
args_parser.add_argument('--word_path',
help='path for word embedding dict')
args_parser.add_argument('--char_embedding',
choices=['random', 'polyglot'],
help='Embedding for characters',
required=True)
args_parser.add_argument('--char_path',
help='path for character embedding dict')
args_parser.add_argument(
'--train') # "data/POS-penn/wsj/split1/wsj1.train.original"
args_parser.add_argument(
'--dev') # "data/POS-penn/wsj/split1/wsj1.dev.original"
args_parser.add_argument(
'--test') # "data/POS-penn/wsj/split1/wsj1.test.original"
args_parser.add_argument('--model_path',
help='path for saving model file.',
required=True)
args_parser.add_argument('--model_name',
help='name for saving model file.',
required=True)
args = args_parser.parse_args()
logger = get_logger("PtrParser")
mode = args.mode
train_path = args.train
dev_path = args.dev
test_path = args.test
model_path = args.model_path
model_name = args.model_name
num_epochs = args.num_epochs
batch_size = args.batch_size
hidden_size = args.hidden_size
arc_space = args.arc_space
type_space = args.type_space
num_layers = args.num_layers
num_filters = args.num_filters
learning_rate = args.learning_rate
opt = args.opt
momentum = 0.9
betas = (0.9, 0.9)
rho = 0.9
eps = 1e-6
decay_rate = args.decay_rate
clip = args.clip
gamma = args.gamma
cov = args.coverage
schedule = args.schedule
p_rnn = tuple(args.p_rnn)
p_in = args.p_in
p_out = args.p_out
unk_replace = args.unk_replace
prior_order = args.prior_order
beam = args.beam
punctuation = args.punctuation
word_embedding = args.word_embedding
word_path = args.word_path
char_embedding = args.char_embedding
char_path = args.char_path
pos_dim = args.pos_dim
word_dict, word_dim = utils.load_embedding_dict(word_embedding, word_path)
char_dict = None
char_dim = args.char_dim
if char_embedding != 'random':
char_dict, char_dim = utils.load_embedding_dict(
char_embedding, char_path)
logger.info("Creating Alphabets")
alphabet_path = os.path.join(model_path, 'alphabets/')
model_name = os.path.join(model_path, model_name)
word_alphabet, char_alphabet, pos_alphabet, type_alphabet = conllx_stacked_data.create_alphabets(
alphabet_path,
train_path,
data_paths=[dev_path, test_path],
max_vocabulary_size=50000,
embedd_dict=word_dict)
num_words = word_alphabet.size()
num_chars = char_alphabet.size()
num_pos = pos_alphabet.size()
num_types = type_alphabet.size()
logger.info("Word Alphabet Size: %d" % num_words)
logger.info("Character Alphabet Size: %d" % num_chars)
logger.info("POS Alphabet Size: %d" % num_pos)
logger.info("Type Alphabet Size: %d" % num_types)
logger.info("Reading Data")
use_gpu = torch.cuda.is_available()
data_train = conllx_stacked_data.read_stacked_data_to_variable(
train_path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
use_gpu=use_gpu,
prior_order=prior_order)
num_data = sum(data_train[1])
data_dev = conllx_stacked_data.read_stacked_data_to_variable(
dev_path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
use_gpu=use_gpu,
volatile=True,
prior_order=prior_order)
data_test = conllx_stacked_data.read_stacked_data_to_variable(
test_path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
use_gpu=use_gpu,
volatile=True,
prior_order=prior_order)
punct_set = None
if punctuation is not None:
punct_set = set(punctuation)
logger.info("punctuations(%d): %s" %
(len(punct_set), ' '.join(punct_set)))
def construct_word_embedding_table():
scale = np.sqrt(3.0 / word_dim)
table = np.empty([word_alphabet.size(), word_dim], dtype=np.float32)
table[conllx_stacked_data.UNK_ID, :] = np.random.uniform(
-scale, scale, [1, word_dim]).astype(np.float32)
oov = 0
for word, index in word_alphabet.items():
if word in word_dict:
embedding = word_dict[word]
elif word.lower() in word_dict:
embedding = word_dict[word.lower()]
else:
embedding = np.random.uniform(-scale, scale,
[1, word_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('word OOV: %d' % oov)
return torch.from_numpy(table)
def construct_char_embedding_table():
if char_dict is None:
return None
scale = np.sqrt(3.0 / char_dim)
table = np.empty([num_chars, char_dim], dtype=np.float32)
table[conllx_stacked_data.UNK_ID, :] = np.random.uniform(
-scale, scale, [1, char_dim]).astype(np.float32)
oov = 0
for char, index, in char_alphabet.items():
if char in char_dict:
embedding = char_dict[char]
else:
embedding = np.random.uniform(-scale, scale,
[1, char_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('character OOV: %d' % oov)
return torch.from_numpy(table)
word_table = construct_word_embedding_table()
char_table = construct_char_embedding_table()
window = 3
network = StackPtrNet(word_dim,
num_words,
char_dim,
num_chars,
pos_dim,
num_pos,
num_filters,
window,
mode,
hidden_size,
num_layers,
num_types,
arc_space,
type_space,
embedd_word=word_table,
embedd_char=char_table,
p_in=p_in,
p_out=p_out,
p_rnn=p_rnn,
biaffine=True,
prior_order=prior_order)
if use_gpu:
network.cuda()
pred_writer = CoNLLXWriter(word_alphabet, char_alphabet, pos_alphabet,
type_alphabet)
gold_writer = CoNLLXWriter(word_alphabet, char_alphabet, pos_alphabet,
type_alphabet)
def generate_optimizer(opt, lr, params):
if opt == 'adam':
return Adam(params,
lr=lr,
betas=betas,
weight_decay=gamma,
eps=eps)
elif opt == 'sgd':
return SGD(params,
lr=lr,
momentum=momentum,
weight_decay=gamma,
nesterov=True)
elif opt == 'adadelta':
return Adadelta(params,
lr=lr,
rho=rho,
weight_decay=gamma,
eps=eps)
else:
raise ValueError('Unknown optimization algorithm: %s' % opt)
lr = learning_rate
optim = generate_optimizer(opt, lr, network.parameters())
opt_info = 'opt: %s, ' % opt
if opt == 'adam':
opt_info += 'betas=%s, eps=%.1e' % (betas, eps)
elif opt == 'sgd':
opt_info += 'momentum=%.2f' % momentum
elif opt == 'adadelta':
opt_info += 'rho=%.2f, eps=%.1e' % (rho, eps)
logger.info("Embedding dim: word=%d, char=%d, pos=%d" %
(word_dim, char_dim, pos_dim))
logger.info(
"Network: %s, num_layer=%d, hidden=%d, filter=%d, arc_space=%d, type_space=%d"
% (mode, num_layers, hidden_size, num_filters, arc_space, type_space))
logger.info(
"train: cov: %.1f, (#data: %d, batch: %d, clip: %.2f, dropout(in, out, rnn): (%.2f, %.2f, %s), unk_repl: %.2f)"
% (cov, num_data, batch_size, clip, p_in, p_out, p_rnn, unk_replace))
logger.info('prior order: %s, beam: %d' % (prior_order, beam))
logger.info(opt_info)
num_batches = num_data / batch_size + 1
dev_ucorrect = 0.0
dev_lcorrect = 0.0
dev_ucomlpete_match = 0.0
dev_lcomplete_match = 0.0
dev_ucorrect_nopunc = 0.0
dev_lcorrect_nopunc = 0.0
dev_ucomlpete_match_nopunc = 0.0
dev_lcomplete_match_nopunc = 0.0
dev_root_correct = 0.0
best_epoch = 0
test_ucorrect = 0.0
test_lcorrect = 0.0
test_ucomlpete_match = 0.0
test_lcomplete_match = 0.0
test_ucorrect_nopunc = 0.0
test_lcorrect_nopunc = 0.0
test_ucomlpete_match_nopunc = 0.0
test_lcomplete_match_nopunc = 0.0
test_root_correct = 0.0
test_total = 0
test_total_nopunc = 0
test_total_inst = 0
test_total_root = 0
patient = 0
for epoch in range(1, num_epochs + 1):
print(
'Epoch %d (%s, optim: %s, learning rate=%.6f, decay rate=%.2f (schedule=%d, patient=%d)): '
% (epoch, mode, opt, lr, decay_rate, schedule, patient))
train_err_arc_leaf = 0.
train_err_arc_non_leaf = 0.
train_err_type_leaf = 0.
train_err_type_non_leaf = 0.
train_err_cov = 0.
train_total_leaf = 0.
train_total_non_leaf = 0.
start_time = time.time()
num_back = 0
network.train()
for batch in range(1, num_batches + 1):
input_encoder, input_decoder = conllx_stacked_data.get_batch_stacked_variable(
data_train, batch_size, unk_replace=unk_replace)
word, char, pos, heads, types, masks_e, lengths_e = input_encoder
stacked_heads, children, stacked_types, masks_d, lengths_d = input_decoder
optim.zero_grad()
loss_arc_leaf, loss_arc_non_leaf, \
loss_type_leaf, loss_type_non_leaf, \
loss_cov, num_leaf, num_non_leaf = network.loss(word, char, pos, stacked_heads, children, stacked_types,
mask_e=masks_e, length_e=lengths_e, mask_d=masks_d, length_d=lengths_d)
loss_arc = loss_arc_leaf + loss_arc_non_leaf
loss_type = loss_type_leaf + loss_type_non_leaf
loss = loss_arc + loss_type + cov * loss_cov
loss.backward()
clip_grad_norm(network.parameters(), clip)
optim.step()
num_leaf = num_leaf.data[0]
num_non_leaf = num_non_leaf.data[0]
train_err_arc_leaf += loss_arc_leaf.data[0] * num_leaf
train_err_arc_non_leaf += loss_arc_non_leaf.data[0] * num_non_leaf
train_err_type_leaf += loss_type_leaf.data[0] * num_leaf
train_err_type_non_leaf += loss_type_non_leaf.data[0] * num_non_leaf
train_err_cov += loss_cov.data[0] * (num_leaf + num_non_leaf)
train_total_leaf += num_leaf
train_total_non_leaf += num_non_leaf
time_ave = (time.time() - start_time) / batch
time_left = (num_batches - batch) * time_ave
# update log
if batch % 10 == 0:
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
err_arc_leaf = train_err_arc_leaf / train_total_leaf
err_arc_non_leaf = train_err_arc_non_leaf / train_total_non_leaf
err_arc = err_arc_leaf + err_arc_non_leaf
err_type_leaf = train_err_type_leaf / train_total_leaf
err_type_non_leaf = train_err_type_non_leaf / train_total_non_leaf
err_type = err_type_leaf + err_type_non_leaf
err_cov = train_err_cov / (train_total_leaf +
train_total_non_leaf)
err = err_arc + err_type + cov * err_cov
log_info = 'train: %d/%d loss (leaf, non_leaf): %.4f, arc: %.4f (%.4f, %.4f), type: %.4f (%.4f, %.4f), coverage: %.4f, time left (estimated): %.2fs' % (
batch, num_batches, err, err_arc, err_arc_leaf,
err_arc_non_leaf, err_type, err_type_leaf,
err_type_non_leaf, err_cov, time_left)
sys.stdout.write(log_info)
sys.stdout.flush()
num_back = len(log_info)
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
err_arc_leaf = train_err_arc_leaf / train_total_leaf
err_arc_non_leaf = train_err_arc_non_leaf / train_total_non_leaf
err_arc = err_arc_leaf + err_arc_non_leaf
err_type_leaf = train_err_type_leaf / train_total_leaf
err_type_non_leaf = train_err_type_non_leaf / train_total_non_leaf
err_type = err_type_leaf + err_type_non_leaf
err_cov = train_err_cov / (train_total_leaf + train_total_non_leaf)
err = err_arc + err_type + cov * err_cov
print(
'train: %d loss (leaf, non_leaf): %.4f, arc: %.4f (%.4f, %.4f), type: %.4f (%.4f, %.4f), coverage: %.4f, time: %.2fs'
% (num_batches, err, err_arc, err_arc_leaf, err_arc_non_leaf,
err_type, err_type_leaf, err_type_non_leaf, err_cov,
time.time() - start_time))
# evaluate performance on dev data
network.eval()
pred_filename = 'tmp/%spred_dev%d' % (str(uid), epoch)
pred_writer.start(pred_filename)
gold_filename = 'tmp/%sgold_dev%d' % (str(uid), epoch)
gold_writer.start(gold_filename)
dev_ucorr = 0.0
dev_lcorr = 0.0
dev_total = 0
dev_ucomlpete = 0.0
dev_lcomplete = 0.0
dev_ucorr_nopunc = 0.0
dev_lcorr_nopunc = 0.0
dev_total_nopunc = 0
dev_ucomlpete_nopunc = 0.0
dev_lcomplete_nopunc = 0.0
dev_root_corr = 0.0
dev_total_root = 0.0
dev_total_inst = 0.0
for batch in conllx_stacked_data.iterate_batch_stacked_variable(
data_dev, batch_size):
input_encoder, _ = batch
word, char, pos, heads, types, masks, lengths = input_encoder
heads_pred, types_pred, _, _ = network.decode(
word,
char,
pos,
mask=masks,
length=lengths,
beam=beam,
leading_symbolic=conllx_stacked_data.NUM_SYMBOLIC_TAGS)
word = word.data.cpu().numpy()
pos = pos.data.cpu().numpy()
lengths = lengths.cpu().numpy()
heads = heads.data.cpu().numpy()
types = types.data.cpu().numpy()
pred_writer.write(word,
pos,
heads_pred,
types_pred,
lengths,
symbolic_root=True)
gold_writer.write(word,
pos,
heads,
types,
lengths,
symbolic_root=True)
stats, stats_nopunc, stats_root, num_inst = parser.eval(
word,
pos,
heads_pred,
types_pred,
heads,
types,
word_alphabet,
pos_alphabet,
lengths,
punct_set=punct_set,
symbolic_root=True)
ucorr, lcorr, total, ucm, lcm = stats
ucorr_nopunc, lcorr_nopunc, total_nopunc, ucm_nopunc, lcm_nopunc = stats_nopunc
corr_root, total_root = stats_root
dev_ucorr += ucorr
dev_lcorr += lcorr
dev_total += total
dev_ucomlpete += ucm
dev_lcomplete += lcm
dev_ucorr_nopunc += ucorr_nopunc
dev_lcorr_nopunc += lcorr_nopunc
dev_total_nopunc += total_nopunc
dev_ucomlpete_nopunc += ucm_nopunc
dev_lcomplete_nopunc += lcm_nopunc
dev_root_corr += corr_root
dev_total_root += total_root
dev_total_inst += num_inst
pred_writer.close()
gold_writer.close()
print(
'W. Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%%'
% (dev_ucorr, dev_lcorr, dev_total, dev_ucorr * 100 / dev_total,
dev_lcorr * 100 / dev_total, dev_ucomlpete * 100 /
dev_total_inst, dev_lcomplete * 100 / dev_total_inst))
print(
'Wo Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%%'
% (dev_ucorr_nopunc, dev_lcorr_nopunc, dev_total_nopunc,
dev_ucorr_nopunc * 100 / dev_total_nopunc, dev_lcorr_nopunc *
100 / dev_total_nopunc, dev_ucomlpete_nopunc * 100 /
dev_total_inst, dev_lcomplete_nopunc * 100 / dev_total_inst))
print('Root: corr: %d, total: %d, acc: %.2f%%' %
(dev_root_corr, dev_total_root,
dev_root_corr * 100 / dev_total_root))
if dev_ucorrect_nopunc <= dev_ucorr_nopunc:
dev_ucorrect_nopunc = dev_ucorr_nopunc
dev_lcorrect_nopunc = dev_lcorr_nopunc
dev_ucomlpete_match_nopunc = dev_ucomlpete_nopunc
dev_lcomplete_match_nopunc = dev_lcomplete_nopunc
dev_ucorrect = dev_ucorr
dev_lcorrect = dev_lcorr
dev_ucomlpete_match = dev_ucomlpete
dev_lcomplete_match = dev_lcomplete
dev_root_correct = dev_root_corr
best_epoch = epoch
patient = 0
torch.save(network, model_name)
pred_filename = 'tmp/%spred_test%d' % (str(uid), epoch)
pred_writer.start(pred_filename)
gold_filename = 'tmp/%sgold_test%d' % (str(uid), epoch)
gold_writer.start(gold_filename)
test_ucorrect = 0.0
test_lcorrect = 0.0
test_ucomlpete_match = 0.0
test_lcomplete_match = 0.0
test_total = 0
test_ucorrect_nopunc = 0.0
test_lcorrect_nopunc = 0.0
test_ucomlpete_match_nopunc = 0.0
test_lcomplete_match_nopunc = 0.0
test_total_nopunc = 0
test_total_inst = 0
test_root_correct = 0.0
test_total_root = 0
for batch in conllx_stacked_data.iterate_batch_stacked_variable(
data_test, batch_size):
input_encoder, _ = batch
word, char, pos, heads, types, masks, lengths = input_encoder
heads_pred, types_pred, _, _ = network.decode(
word,
char,
pos,
mask=masks,
length=lengths,
beam=beam,
leading_symbolic=conllx_stacked_data.NUM_SYMBOLIC_TAGS)
word = word.data.cpu().numpy()
pos = pos.data.cpu().numpy()
lengths = lengths.cpu().numpy()
heads = heads.data.cpu().numpy()
types = types.data.cpu().numpy()
pred_writer.write(word,
pos,
heads_pred,
types_pred,
lengths,
symbolic_root=True)
gold_writer.write(word,
pos,
heads,
types,
lengths,
symbolic_root=True)
stats, stats_nopunc, stats_root, num_inst = parser.eval(
word,
pos,
heads_pred,
types_pred,
heads,
types,
word_alphabet,
pos_alphabet,
lengths,
punct_set=punct_set,
symbolic_root=True)
ucorr, lcorr, total, ucm, lcm = stats
ucorr_nopunc, lcorr_nopunc, total_nopunc, ucm_nopunc, lcm_nopunc = stats_nopunc
corr_root, total_root = stats_root
test_ucorrect += ucorr
test_lcorrect += lcorr
test_total += total
test_ucomlpete_match += ucm
test_lcomplete_match += lcm
test_ucorrect_nopunc += ucorr_nopunc
test_lcorrect_nopunc += lcorr_nopunc
test_total_nopunc += total_nopunc
test_ucomlpete_match_nopunc += ucm_nopunc
test_lcomplete_match_nopunc += lcm_nopunc
test_root_correct += corr_root
test_total_root += total_root
test_total_inst += num_inst
pred_writer.close()
gold_writer.close()
else:
if patient < schedule:
patient += 1
else:
network = torch.load(model_name)
lr = lr * decay_rate
optim = generate_optimizer(opt, lr, network.parameters())
patient = 0
print(
'----------------------------------------------------------------------------------------------------------------------------'
)
print(
'best dev W. Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)'
% (dev_ucorrect, dev_lcorrect, dev_total,
dev_ucorrect * 100 / dev_total, dev_lcorrect * 100 / dev_total,
dev_ucomlpete_match * 100 / dev_total_inst,
dev_lcomplete_match * 100 / dev_total_inst, best_epoch))
print(
'best dev Wo Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)'
% (dev_ucorrect_nopunc, dev_lcorrect_nopunc, dev_total_nopunc,
dev_ucorrect_nopunc * 100 / dev_total_nopunc,
dev_lcorrect_nopunc * 100 / dev_total_nopunc,
dev_ucomlpete_match_nopunc * 100 / dev_total_inst,
dev_lcomplete_match_nopunc * 100 / dev_total_inst, best_epoch))
print('best dev Root: corr: %d, total: %d, acc: %.2f%% (epoch: %d)' %
(dev_root_correct, dev_total_root,
dev_root_correct * 100 / dev_total_root, best_epoch))
print(
'----------------------------------------------------------------------------------------------------------------------------'
)
print(
'best test W. Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)'
% (test_ucorrect, test_lcorrect, test_total, test_ucorrect * 100 /
test_total, test_lcorrect * 100 / test_total,
test_ucomlpete_match * 100 / test_total_inst,
test_lcomplete_match * 100 / test_total_inst, best_epoch))
print(
'best test Wo Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)'
%
(test_ucorrect_nopunc, test_lcorrect_nopunc, test_total_nopunc,
test_ucorrect_nopunc * 100 / test_total_nopunc,
test_lcorrect_nopunc * 100 / test_total_nopunc,
test_ucomlpete_match_nopunc * 100 / test_total_inst,
test_lcomplete_match_nopunc * 100 / test_total_inst, best_epoch))
print('best test Root: corr: %d, total: %d, acc: %.2f%% (epoch: %d)' %
(test_root_correct, test_total_root,
test_root_correct * 100 / test_total_root, best_epoch))
print(
'============================================================================================================================'
)
def main():
args_parser = argparse.ArgumentParser(
description='Tuning with stack pointer parser')
args_parser.add_argument('--seed',
type=int,
default=1234,
help='random seed for reproducibility')
args_parser.add_argument('--mode',
choices=['RNN', 'LSTM', 'GRU', 'FastLSTM'],
help='architecture of rnn',
required=True)
args_parser.add_argument('--batch_size',
type=int,
default=64,
help='Number of sentences in each batch')
args_parser.add_argument('--decoder_input_size',
type=int,
default=256,
help='Number of input units in decoder RNN.')
args_parser.add_argument('--hidden_size',
type=int,
default=256,
help='Number of hidden units in RNN')
args_parser.add_argument('--arc_space',
type=int,
default=128,
help='Dimension of tag space')
args_parser.add_argument('--type_space',
type=int,
default=128,
help='Dimension of tag space')
args_parser.add_argument('--encoder_layers',
type=int,
default=1,
help='Number of layers of encoder RNN')
args_parser.add_argument('--decoder_layers',
type=int,
default=1,
help='Number of layers of decoder RNN')
args_parser.add_argument('--num_filters',
type=int,
default=50,
help='Number of filters in CNN')
args_parser.add_argument(
'--trans_hid_size',
type=int,
default=1024,
help='#hidden units in point-wise feed-forward in transformer')
args_parser.add_argument(
'--d_k',
type=int,
default=64,
help='d_k for multi-head-attention in transformer encoder')
args_parser.add_argument(
'--d_v',
type=int,
default=64,
help='d_v for multi-head-attention in transformer encoder')
args_parser.add_argument('--multi_head_attn',
action='store_true',
help='use multi-head-attention.')
args_parser.add_argument('--num_head',
type=int,
default=8,
help='Value of h in multi-head attention')
args_parser.add_argument(
'--pool_type',
default='mean',
choices=['max', 'mean', 'weight'],
help='pool type to form fixed length vector from word embeddings')
args_parser.add_argument('--train_position',
action='store_true',
help='train positional encoding for transformer.')
args_parser.add_argument('--no_word',
action='store_true',
help='do not use word embedding.')
args_parser.add_argument('--pos',
action='store_true',
help='use part-of-speech embedding.')
args_parser.add_argument('--char',
action='store_true',
help='use character embedding and CNN.')
args_parser.add_argument('--no_CoRNN',
action='store_true',
help='do not use context RNN.')
args_parser.add_argument('--pos_dim',
type=int,
default=50,
help='Dimension of POS embeddings')
args_parser.add_argument('--char_dim',
type=int,
default=50,
help='Dimension of Character embeddings')
args_parser.add_argument('--opt',
choices=['adam', 'sgd', 'adamax'],
help='optimization algorithm')
args_parser.add_argument('--learning_rate',
type=float,
default=0.001,
help='Learning rate')
args_parser.add_argument('--clip',
type=float,
default=5.0,
help='gradient clipping')
args_parser.add_argument('--gamma',
type=float,
default=0.0,
help='weight for regularization')
args_parser.add_argument('--epsilon',
type=float,
default=1e-8,
help='epsilon for adam or adamax')
args_parser.add_argument('--coverage',
type=float,
default=0.0,
help='weight for coverage loss')
args_parser.add_argument('--p_rnn',
nargs='+',
type=float,
required=True,
help='dropout rate for RNN')
args_parser.add_argument('--p_in',
type=float,
default=0.33,
help='dropout rate for input embeddings')
args_parser.add_argument('--p_out',
type=float,
default=0.33,
help='dropout rate for output layer')
args_parser.add_argument('--label_smooth',
type=float,
default=1.0,
help='weight of label smoothing method')
args_parser.add_argument('--skipConnect',
action='store_true',
help='use skip connection for decoder RNN.')
args_parser.add_argument('--grandPar',
action='store_true',
help='use grand parent.')
args_parser.add_argument('--sibling',
action='store_true',
help='use sibling.')
args_parser.add_argument(
'--prior_order',
choices=['inside_out', 'left2right', 'deep_first', 'shallow_first'],
help='prior order of children.',
required=True)
args_parser.add_argument(
'--unk_replace',
type=float,
default=0.,
help='The rate to replace a singleton word with UNK')
args_parser.add_argument('--punctuation',
nargs='+',
type=str,
help='List of punctuations')
args_parser.add_argument('--beam',
type=int,
default=1,
help='Beam size for decoding')
args_parser.add_argument(
'--word_embedding',
choices=['word2vec', 'glove', 'senna', 'sskip', 'polyglot'],
help='Embedding for words',
required=True)
args_parser.add_argument('--word_path',
help='path for word embedding dict')
args_parser.add_argument(
'--freeze',
action='store_true',
help='frozen the word embedding (disable fine-tuning).')
args_parser.add_argument('--char_embedding',
choices=['random', 'polyglot'],
help='Embedding for characters',
required=True)
args_parser.add_argument('--char_path',
help='path for character embedding dict')
args_parser.add_argument(
'--train') # "data/POS-penn/wsj/split1/wsj1.train.original"
args_parser.add_argument(
'--dev') # "data/POS-penn/wsj/split1/wsj1.dev.original"
args_parser.add_argument(
'--test') # "data/POS-penn/wsj/split1/wsj1.test.original"
args_parser.add_argument('--vocab_path',
help='path for prebuilt alphabets.',
default=None)
args_parser.add_argument('--model_path',
help='path for saving model file.',
required=True)
args_parser.add_argument('--model_name',
help='name for saving model file.',
required=True)
args_parser.add_argument(
'--position_embed_num',
type=int,
default=200,
help=
'Minimum value of position embedding num, which usually is max-sent-length.'
)
args_parser.add_argument('--num_epochs',
type=int,
default=2000,
help='Number of training epochs')
# lrate schedule with warmup in the first iter.
args_parser.add_argument('--use_warmup_schedule',
action='store_true',
help="Use warmup lrate schedule.")
args_parser.add_argument('--decay_rate',
type=float,
default=0.75,
help='Decay rate of learning rate')
args_parser.add_argument('--max_decay',
type=int,
default=9,
help='Number of decays before stop')
args_parser.add_argument('--schedule',
type=int,
help='schedule for learning rate decay')
args_parser.add_argument('--double_schedule_decay',
type=int,
default=5,
help='Number of decays to double schedule')
args_parser.add_argument(
'--check_dev',
type=int,
default=5,
help='Check development performance in every n\'th iteration')
#
# about decoder's bi-attention scoring with features (default is not using any)
args_parser.add_argument(
'--dec_max_dist',
type=int,
default=0,
help=
"The clamp range of decoder's distance feature, 0 means turning off.")
args_parser.add_argument('--dec_dim_feature',
type=int,
default=10,
help="Dim for feature embed.")
args_parser.add_argument(
'--dec_use_neg_dist',
action='store_true',
help="Use negative distance for dec's distance feature.")
args_parser.add_argument(
'--dec_use_encoder_pos',
action='store_true',
help="Use pos feature combined with distance feature for child nodes.")
args_parser.add_argument(
'--dec_use_decoder_pos',
action='store_true',
help="Use pos feature combined with distance feature for head nodes.")
args_parser.add_argument('--dec_drop_f_embed',
type=float,
default=0.2,
help="Dropout for dec feature embeddings.")
#
# about relation-aware self attention for the transformer encoder (default is not using any)
# args_parser.add_argument('--rel_aware', action='store_true',
# help="Enable relation-aware self-attention (multi_head_attn flag needs to be set).")
args_parser.add_argument(
'--enc_use_neg_dist',
action='store_true',
help="Use negative distance for enc's relational-distance embedding.")
args_parser.add_argument(
'--enc_clip_dist',
type=int,
default=0,
help="The clipping distance for relative position features.")
#
# other options about how to combine multiple input features (have to make some dims fit if not concat)
args_parser.add_argument('--input_concat_embeds',
action='store_true',
help="Concat input embeddings, otherwise add.")
args_parser.add_argument('--input_concat_position',
action='store_true',
help="Concat position embeddings, otherwise add.")
args_parser.add_argument('--position_dim',
type=int,
default=300,
help='Dimension of Position embeddings.')
#
args_parser.add_argument(
'--train_len_thresh',
type=int,
default=100,
help='In training, discard sentences longer than this.')
args = args_parser.parse_args()
# =====
# fix data-prepare seed
random.seed(1234)
np.random.seed(1234)
# model's seed
torch.manual_seed(args.seed)
# =====
# if output directory doesn't exist, create it
if not os.path.exists(args.model_path):
os.makedirs(args.model_path)
logger = get_logger("PtrParser", args.model_path + 'log.txt')
logger.info('\ncommand-line params : {0}\n'.format(sys.argv[1:]))
logger.info('{0}\n'.format(args))
mode = args.mode
train_path = args.train
dev_path = args.dev
test_path = args.test
vocab_path = args.vocab_path if args.vocab_path is not None else args.model_path
model_path = args.model_path
model_name = args.model_name
num_epochs = args.num_epochs
batch_size = args.batch_size
input_size_decoder = args.decoder_input_size
hidden_size = args.hidden_size
arc_space = args.arc_space
type_space = args.type_space
encoder_layers = args.encoder_layers
decoder_layers = args.decoder_layers
num_filters = args.num_filters
learning_rate = args.learning_rate
opt = args.opt
momentum = 0.9
betas = (0.9, 0.9)
eps = args.epsilon
decay_rate = args.decay_rate
clip = args.clip
gamma = args.gamma
cov = args.coverage
schedule = args.schedule
p_rnn = tuple(args.p_rnn)
p_in = args.p_in
p_out = args.p_out
label_smooth = args.label_smooth
unk_replace = args.unk_replace
prior_order = args.prior_order
skipConnect = args.skipConnect
grandPar = args.grandPar
sibling = args.sibling
beam = args.beam
punctuation = args.punctuation
freeze = args.freeze
use_word_emb = not args.no_word
word_embedding = args.word_embedding
word_path = args.word_path
use_char = args.char
char_embedding = args.char_embedding
char_path = args.char_path
use_con_rnn = not args.no_CoRNN
use_pos = args.pos
pos_dim = args.pos_dim
word_dict, word_dim = utils.load_embedding_dict(
word_embedding, word_path) if use_word_emb else (None, 0)
char_dict = None
char_dim = args.char_dim
if char_embedding != 'random':
char_dict, char_dim = utils.load_embedding_dict(
char_embedding, char_path)
logger.info("Creating Alphabets")
alphabet_path = os.path.join(vocab_path, 'alphabets/')
model_name = os.path.join(model_path, model_name)
# todo(warn): should build vocabs previously
assert os.path.isdir(alphabet_path), "should have build vocabs previously"
word_alphabet, char_alphabet, pos_alphabet, type_alphabet, max_sent_length = conllx_stacked_data.create_alphabets(
alphabet_path,
train_path,
data_paths=[dev_path, test_path],
max_vocabulary_size=50000,
embedd_dict=word_dict)
# word_alphabet, char_alphabet, pos_alphabet, type_alphabet, max_sent_length = create_alphabets(alphabet_path,
# train_path, data_paths=[dev_path, test_path], max_vocabulary_size=50000, embedd_dict=word_dict)
max_sent_length = max(max_sent_length, args.position_embed_num)
num_words = word_alphabet.size()
num_chars = char_alphabet.size()
num_pos = pos_alphabet.size()
num_types = type_alphabet.size()
logger.info("Word Alphabet Size: %d" % num_words)
logger.info("Character Alphabet Size: %d" % num_chars)
logger.info("POS Alphabet Size: %d" % num_pos)
logger.info("Type Alphabet Size: %d" % num_types)
logger.info("Reading Data")
use_gpu = torch.cuda.is_available()
# ===== the reading
def _read_one(path, is_train):
lang_id = guess_language_id(path)
logger.info("Reading: guess that the language of file %s is %s." %
(path, lang_id))
one_data = conllx_stacked_data.read_stacked_data_to_variable(
path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
use_gpu=use_gpu,
volatile=(not is_train),
prior_order=prior_order,
lang_id=lang_id,
len_thresh=(args.train_len_thresh if is_train else 100000))
return one_data
data_train = _read_one(train_path, True)
num_data = sum(data_train[1])
data_dev = _read_one(dev_path, False)
data_test = _read_one(test_path, False)
# =====
punct_set = None
if punctuation is not None:
punct_set = set(punctuation)
logger.info("punctuations(%d): %s" %
(len(punct_set), ' '.join(punct_set)))
def construct_word_embedding_table():
scale = np.sqrt(3.0 / word_dim)
table = np.empty([word_alphabet.size(), word_dim], dtype=np.float32)
table[conllx_stacked_data.UNK_ID, :] = np.zeros([1, word_dim]).astype(
np.float32) if freeze else np.random.uniform(
-scale, scale, [1, word_dim]).astype(np.float32)
oov = 0
for word, index in word_alphabet.items():
if word in word_dict:
embedding = word_dict[word]
elif word.lower() in word_dict:
embedding = word_dict[word.lower()]
else:
embedding = np.zeros([1, word_dim]).astype(
np.float32) if freeze else np.random.uniform(
-scale, scale, [1, word_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
logger.info('word OOV: %d' % oov)
return torch.from_numpy(table)
def construct_char_embedding_table():
if char_dict is None:
return None
scale = np.sqrt(3.0 / char_dim)
table = np.empty([num_chars, char_dim], dtype=np.float32)
table[conllx_stacked_data.UNK_ID, :] = np.random.uniform(
-scale, scale, [1, char_dim]).astype(np.float32)
oov = 0
for char, index, in char_alphabet.items():
if char in char_dict:
embedding = char_dict[char]
else:
embedding = np.random.uniform(-scale, scale,
[1, char_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
logger.info('character OOV: %d' % oov)
return torch.from_numpy(table)
word_table = construct_word_embedding_table() if use_word_emb else None
char_table = construct_char_embedding_table()
window = 3
network = StackPtrNet(word_dim,
num_words,
char_dim,
num_chars,
pos_dim,
num_pos,
num_filters,
window,
mode,
input_size_decoder,
hidden_size,
encoder_layers,
decoder_layers,
num_types,
arc_space,
type_space,
args.pool_type,
args.multi_head_attn,
args.num_head,
max_sent_length,
args.trans_hid_size,
args.d_k,
args.d_v,
train_position=args.train_position,
embedd_word=word_table,
embedd_char=char_table,
p_in=p_in,
p_out=p_out,
p_rnn=p_rnn,
biaffine=True,
use_word_emb=use_word_emb,
pos=use_pos,
char=use_char,
prior_order=prior_order,
use_con_rnn=use_con_rnn,
skipConnect=skipConnect,
grandPar=grandPar,
sibling=sibling,
use_gpu=use_gpu,
dec_max_dist=args.dec_max_dist,
dec_use_neg_dist=args.dec_use_neg_dist,
dec_use_encoder_pos=args.dec_use_encoder_pos,
dec_use_decoder_pos=args.dec_use_decoder_pos,
dec_dim_feature=args.dec_dim_feature,
dec_drop_f_embed=args.dec_drop_f_embed,
enc_clip_dist=args.enc_clip_dist,
enc_use_neg_dist=args.enc_use_neg_dist,
input_concat_embeds=args.input_concat_embeds,
input_concat_position=args.input_concat_position,
position_dim=args.position_dim)
def save_args():
arg_path = model_name + '.arg.json'
arguments = [
word_dim, num_words, char_dim, num_chars, pos_dim, num_pos,
num_filters, window, mode, input_size_decoder, hidden_size,
encoder_layers, decoder_layers, num_types, arc_space, type_space,
args.pool_type, args.multi_head_attn, args.num_head,
max_sent_length, args.trans_hid_size, args.d_k, args.d_v
]
kwargs = {
'train_position': args.train_position,
'use_word_emb': use_word_emb,
'use_con_rnn': use_con_rnn,
'p_in': p_in,
'p_out': p_out,
'p_rnn': p_rnn,
'biaffine': True,
'pos': use_pos,
'char': use_char,
'prior_order': prior_order,
'skipConnect': skipConnect,
'grandPar': grandPar,
'sibling': sibling,
'dec_max_dist': args.dec_max_dist,
'dec_use_neg_dist': args.dec_use_neg_dist,
'dec_use_encoder_pos': args.dec_use_encoder_pos,
'dec_use_decoder_pos': args.dec_use_decoder_pos,
'dec_dim_feature': args.dec_dim_feature,
'dec_drop_f_embed': args.dec_drop_f_embed,
'enc_clip_dist': args.enc_clip_dist,
'enc_use_neg_dist': args.enc_use_neg_dist,
'input_concat_embeds': args.input_concat_embeds,
'input_concat_position': args.input_concat_position,
'position_dim': args.position_dim
}
json.dump({
'args': arguments,
'kwargs': kwargs
},
open(arg_path, 'w'),
indent=4)
if use_word_emb and freeze:
network.word_embedd.freeze()
if use_gpu:
network.cuda()
save_args()
pred_writer = CoNLLXWriter(word_alphabet, char_alphabet, pos_alphabet,
type_alphabet)
gold_writer = CoNLLXWriter(word_alphabet, char_alphabet, pos_alphabet,
type_alphabet)
def generate_optimizer(opt, lr, params):
params = filter(lambda param: param.requires_grad, params)
if opt == 'adam':
return Adam(params,
lr=lr,
betas=betas,
weight_decay=gamma,
eps=eps)
elif opt == 'sgd':
return SGD(params,
lr=lr,
momentum=momentum,
weight_decay=gamma,
nesterov=True)
elif opt == 'adamax':
return Adamax(params,
lr=lr,
betas=betas,
weight_decay=gamma,
eps=eps)
else:
raise ValueError('Unknown optimization algorithm: %s' % opt)
lr = learning_rate
optim = generate_optimizer(opt, lr, network.parameters())
opt_info = 'opt: %s, ' % opt
if opt == 'adam':
opt_info += 'betas=%s, eps=%.1e' % (betas, eps)
elif opt == 'sgd':
opt_info += 'momentum=%.2f' % momentum
elif opt == 'adamax':
opt_info += 'betas=%s, eps=%.1e' % (betas, eps)
word_status = 'frozen' if freeze else 'fine tune'
char_status = 'enabled' if use_char else 'disabled'
pos_status = 'enabled' if use_pos else 'disabled'
logger.info(
"Embedding dim: word=%d (%s), char=%d (%s), pos=%d (%s)" %
(word_dim, word_status, char_dim, char_status, pos_dim, pos_status))
logger.info("CNN: filter=%d, kernel=%d" % (num_filters, window))
logger.info(
"RNN: %s, num_layer=(%d, %d), input_dec=%d, hidden=%d, arc_space=%d, type_space=%d"
% (mode, encoder_layers, decoder_layers, input_size_decoder,
hidden_size, arc_space, type_space))
logger.info(
"train: cov: %.1f, (#data: %d, batch: %d, clip: %.2f, label_smooth: %.2f, unk_repl: %.2f)"
% (cov, num_data, batch_size, clip, label_smooth, unk_replace))
logger.info("dropout(in, out, rnn): (%.2f, %.2f, %s)" %
(p_in, p_out, p_rnn))
logger.info('prior order: %s, grand parent: %s, sibling: %s, ' %
(prior_order, grandPar, sibling))
logger.info('skip connect: %s, beam: %d' % (skipConnect, beam))
logger.info(opt_info)
num_batches = num_data / batch_size + 1
dev_ucorrect = 0.0
dev_lcorrect = 0.0
dev_ucomlpete_match = 0.0
dev_lcomplete_match = 0.0
dev_ucorrect_nopunc = 0.0
dev_lcorrect_nopunc = 0.0
dev_ucomlpete_match_nopunc = 0.0
dev_lcomplete_match_nopunc = 0.0
dev_root_correct = 0.0
best_epoch = 0
test_ucorrect = 0.0
test_lcorrect = 0.0
test_ucomlpete_match = 0.0
test_lcomplete_match = 0.0
test_ucorrect_nopunc = 0.0
test_lcorrect_nopunc = 0.0
test_ucomlpete_match_nopunc = 0.0
test_lcomplete_match_nopunc = 0.0
test_root_correct = 0.0
test_total = 0
test_total_nopunc = 0
test_total_inst = 0
test_total_root = 0
# lrate decay
patient = 0
decay = 0
max_decay = args.max_decay
double_schedule_decay = args.double_schedule_decay
# lrate schedule
step_num = 0
use_warmup_schedule = args.use_warmup_schedule
warmup_factor = (lr + 0.) / num_batches
if use_warmup_schedule:
logger.info("Use warmup lrate for the first epoch, from 0 up to %s." %
(lr, ))
#
for epoch in range(1, num_epochs + 1):
logger.info(
'Epoch %d (%s, optim: %s, learning rate=%.6f, eps=%.1e, decay rate=%.2f '
'(schedule=%d, patient=%d, decay=%d (%d, %d))): ' %
(epoch, mode, opt, lr, eps, decay_rate, schedule, patient, decay,
max_decay, double_schedule_decay))
train_err_arc_leaf = 0.
train_err_arc_non_leaf = 0.
train_err_type_leaf = 0.
train_err_type_non_leaf = 0.
train_err_cov = 0.
train_total_leaf = 0.
train_total_non_leaf = 0.
start_time = time.time()
num_back = 0
network.train()
for batch in range(1, num_batches + 1):
# lrate schedule (before each step)
step_num += 1
if use_warmup_schedule and epoch <= 1:
cur_lrate = warmup_factor * step_num
# set lr
for param_group in optim.param_groups:
param_group['lr'] = cur_lrate
# train
input_encoder, input_decoder = conllx_stacked_data.get_batch_stacked_variable(
data_train, batch_size, unk_replace=unk_replace)
word, char, pos, heads, types, masks_e, lengths_e = input_encoder
stacked_heads, children, sibling, stacked_types, skip_connect, masks_d, lengths_d = input_decoder
optim.zero_grad()
loss_arc_leaf, loss_arc_non_leaf, \
loss_type_leaf, loss_type_non_leaf, \
loss_cov, num_leaf, num_non_leaf = network.loss(word, char, pos, heads, stacked_heads, children, sibling,
stacked_types, label_smooth,
skip_connect=skip_connect, mask_e=masks_e,
length_e=lengths_e, mask_d=masks_d, length_d=lengths_d)
loss_arc = loss_arc_leaf + loss_arc_non_leaf
loss_type = loss_type_leaf + loss_type_non_leaf
loss = loss_arc + loss_type + cov * loss_cov
loss.backward()
clip_grad_norm(network.parameters(), clip)
optim.step()
num_leaf = num_leaf.data[0]
num_non_leaf = num_non_leaf.data[0]
train_err_arc_leaf += loss_arc_leaf.data[0] * num_leaf
train_err_arc_non_leaf += loss_arc_non_leaf.data[0] * num_non_leaf
train_err_type_leaf += loss_type_leaf.data[0] * num_leaf
train_err_type_non_leaf += loss_type_non_leaf.data[0] * num_non_leaf
train_err_cov += loss_cov.data[0] * (num_leaf + num_non_leaf)
train_total_leaf += num_leaf
train_total_non_leaf += num_non_leaf
time_ave = (time.time() - start_time) / batch
time_left = (num_batches - batch) * time_ave
# update log
if batch % 10 == 0:
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
err_arc_leaf = train_err_arc_leaf / train_total_leaf
err_arc_non_leaf = train_err_arc_non_leaf / train_total_non_leaf
err_arc = err_arc_leaf + err_arc_non_leaf
err_type_leaf = train_err_type_leaf / train_total_leaf
err_type_non_leaf = train_err_type_non_leaf / train_total_non_leaf
err_type = err_type_leaf + err_type_non_leaf
err_cov = train_err_cov / (train_total_leaf +
train_total_non_leaf)
err = err_arc + err_type + cov * err_cov
log_info = 'train: %d/%d loss (leaf, non_leaf): %.4f, arc: %.4f (%.4f, %.4f), type: %.4f (%.4f, %.4f), coverage: %.4f, time left (estimated): %.2fs' % (
batch, num_batches, err, err_arc, err_arc_leaf,
err_arc_non_leaf, err_type, err_type_leaf,
err_type_non_leaf, err_cov, time_left)
sys.stdout.write(log_info)
sys.stdout.flush()
num_back = len(log_info)
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
err_arc_leaf = train_err_arc_leaf / train_total_leaf
err_arc_non_leaf = train_err_arc_non_leaf / train_total_non_leaf
err_arc = err_arc_leaf + err_arc_non_leaf
err_type_leaf = train_err_type_leaf / train_total_leaf
err_type_non_leaf = train_err_type_non_leaf / train_total_non_leaf
err_type = err_type_leaf + err_type_non_leaf
err_cov = train_err_cov / (train_total_leaf + train_total_non_leaf)
err = err_arc + err_type + cov * err_cov
logger.info(
'train: %d loss (leaf, non_leaf): %.4f, arc: %.4f (%.4f, %.4f), type: %.4f (%.4f, %.4f), coverage: %.4f, time: %.2fs'
% (num_batches, err, err_arc, err_arc_leaf, err_arc_non_leaf,
err_type, err_type_leaf, err_type_non_leaf, err_cov,
time.time() - start_time))
################################################################################################
if epoch % args.check_dev != 0:
continue
# evaluate performance on dev data
network.eval()
pred_filename = 'tmp/%spred_dev%d' % (str(uid), epoch)
pred_writer.start(pred_filename)
gold_filename = 'tmp/%sgold_dev%d' % (str(uid), epoch)
gold_writer.start(gold_filename)
dev_ucorr = 0.0
dev_lcorr = 0.0
dev_total = 0
dev_ucomlpete = 0.0
dev_lcomplete = 0.0
dev_ucorr_nopunc = 0.0
dev_lcorr_nopunc = 0.0
dev_total_nopunc = 0
dev_ucomlpete_nopunc = 0.0
dev_lcomplete_nopunc = 0.0
dev_root_corr = 0.0
dev_total_root = 0.0
dev_total_inst = 0.0
for batch in conllx_stacked_data.iterate_batch_stacked_variable(
data_dev, batch_size):
input_encoder, _ = batch
word, char, pos, heads, types, masks, lengths = input_encoder
heads_pred, types_pred, _, _ = network.decode(
word,
char,
pos,
mask=masks,
length=lengths,
beam=beam,
leading_symbolic=conllx_stacked_data.NUM_SYMBOLIC_TAGS)
word = word.data.cpu().numpy()
pos = pos.data.cpu().numpy()
lengths = lengths.cpu().numpy()
heads = heads.data.cpu().numpy()
types = types.data.cpu().numpy()
pred_writer.write(word,
pos,
heads_pred,
types_pred,
lengths,
symbolic_root=True)
gold_writer.write(word,
pos,
heads,
types,
lengths,
symbolic_root=True)
stats, stats_nopunc, stats_root, num_inst = parser.eval(
word,
pos,
heads_pred,
types_pred,
heads,
types,
word_alphabet,
pos_alphabet,
lengths,
punct_set=punct_set,
symbolic_root=True)
ucorr, lcorr, total, ucm, lcm = stats
ucorr_nopunc, lcorr_nopunc, total_nopunc, ucm_nopunc, lcm_nopunc = stats_nopunc
corr_root, total_root = stats_root
dev_ucorr += ucorr
dev_lcorr += lcorr
dev_total += total
dev_ucomlpete += ucm
dev_lcomplete += lcm
dev_ucorr_nopunc += ucorr_nopunc
dev_lcorr_nopunc += lcorr_nopunc
dev_total_nopunc += total_nopunc
dev_ucomlpete_nopunc += ucm_nopunc
dev_lcomplete_nopunc += lcm_nopunc
dev_root_corr += corr_root
dev_total_root += total_root
dev_total_inst += num_inst
pred_writer.close()
gold_writer.close()
print(
'W. Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%%'
% (dev_ucorr, dev_lcorr, dev_total, dev_ucorr * 100 / dev_total,
dev_lcorr * 100 / dev_total, dev_ucomlpete * 100 /
dev_total_inst, dev_lcomplete * 100 / dev_total_inst))
print(
'Wo Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%%'
% (dev_ucorr_nopunc, dev_lcorr_nopunc, dev_total_nopunc,
dev_ucorr_nopunc * 100 / dev_total_nopunc, dev_lcorr_nopunc *
100 / dev_total_nopunc, dev_ucomlpete_nopunc * 100 /
dev_total_inst, dev_lcomplete_nopunc * 100 / dev_total_inst))
print('Root: corr: %d, total: %d, acc: %.2f%%' %
(dev_root_corr, dev_total_root,
dev_root_corr * 100 / dev_total_root))
if dev_lcorrect_nopunc < dev_lcorr_nopunc or (
dev_lcorrect_nopunc == dev_lcorr_nopunc
and dev_ucorrect_nopunc < dev_ucorr_nopunc):
dev_ucorrect_nopunc = dev_ucorr_nopunc
dev_lcorrect_nopunc = dev_lcorr_nopunc
dev_ucomlpete_match_nopunc = dev_ucomlpete_nopunc
dev_lcomplete_match_nopunc = dev_lcomplete_nopunc
dev_ucorrect = dev_ucorr
dev_lcorrect = dev_lcorr
dev_ucomlpete_match = dev_ucomlpete
dev_lcomplete_match = dev_lcomplete
dev_root_correct = dev_root_corr
best_epoch = epoch
patient = 0
# torch.save(network, model_name)
torch.save(network.state_dict(), model_name)
pred_filename = 'tmp/%spred_test%d' % (str(uid), epoch)
pred_writer.start(pred_filename)
gold_filename = 'tmp/%sgold_test%d' % (str(uid), epoch)
gold_writer.start(gold_filename)
test_ucorrect = 0.0
test_lcorrect = 0.0
test_ucomlpete_match = 0.0
test_lcomplete_match = 0.0
test_total = 0
test_ucorrect_nopunc = 0.0
test_lcorrect_nopunc = 0.0
test_ucomlpete_match_nopunc = 0.0
test_lcomplete_match_nopunc = 0.0
test_total_nopunc = 0
test_total_inst = 0
test_root_correct = 0.0
test_total_root = 0
for batch in conllx_stacked_data.iterate_batch_stacked_variable(
data_test, batch_size):
input_encoder, _ = batch
word, char, pos, heads, types, masks, lengths = input_encoder
heads_pred, types_pred, _, _ = network.decode(
word,
char,
pos,
mask=masks,
length=lengths,
beam=beam,
leading_symbolic=conllx_stacked_data.NUM_SYMBOLIC_TAGS)
word = word.data.cpu().numpy()
pos = pos.data.cpu().numpy()
lengths = lengths.cpu().numpy()
heads = heads.data.cpu().numpy()
types = types.data.cpu().numpy()
pred_writer.write(word,
pos,
heads_pred,
types_pred,
lengths,
symbolic_root=True)
gold_writer.write(word,
pos,
heads,
types,
lengths,
symbolic_root=True)
stats, stats_nopunc, stats_root, num_inst = parser.eval(
word,
pos,
heads_pred,
types_pred,
heads,
types,
word_alphabet,
pos_alphabet,
lengths,
punct_set=punct_set,
symbolic_root=True)
ucorr, lcorr, total, ucm, lcm = stats
ucorr_nopunc, lcorr_nopunc, total_nopunc, ucm_nopunc, lcm_nopunc = stats_nopunc
corr_root, total_root = stats_root
test_ucorrect += ucorr
test_lcorrect += lcorr
test_total += total
test_ucomlpete_match += ucm
test_lcomplete_match += lcm
test_ucorrect_nopunc += ucorr_nopunc
test_lcorrect_nopunc += lcorr_nopunc
test_total_nopunc += total_nopunc
test_ucomlpete_match_nopunc += ucm_nopunc
test_lcomplete_match_nopunc += lcm_nopunc
test_root_correct += corr_root
test_total_root += total_root
test_total_inst += num_inst
pred_writer.close()
gold_writer.close()
else:
if dev_ucorr_nopunc * 100 / dev_total_nopunc < dev_ucorrect_nopunc * 100 / dev_total_nopunc - 5 or patient >= schedule:
network.load_state_dict(torch.load(model_name))
lr = lr * decay_rate
optim = generate_optimizer(opt, lr, network.parameters())
patient = 0
decay += 1
if decay % double_schedule_decay == 0:
schedule *= 2
else:
patient += 1
logger.info(
'----------------------------------------------------------------------------------------------------------------------------'
)
logger.info(
'best dev W. Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)'
% (dev_ucorrect, dev_lcorrect, dev_total,
dev_ucorrect * 100 / dev_total, dev_lcorrect * 100 / dev_total,
dev_ucomlpete_match * 100 / dev_total_inst,
dev_lcomplete_match * 100 / dev_total_inst, best_epoch))
logger.info(
'best dev Wo Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)'
% (dev_ucorrect_nopunc, dev_lcorrect_nopunc, dev_total_nopunc,
dev_ucorrect_nopunc * 100 / dev_total_nopunc,
dev_lcorrect_nopunc * 100 / dev_total_nopunc,
dev_ucomlpete_match_nopunc * 100 / dev_total_inst,
dev_lcomplete_match_nopunc * 100 / dev_total_inst, best_epoch))
logger.info(
'best dev Root: corr: %d, total: %d, acc: %.2f%% (epoch: %d)' %
(dev_root_correct, dev_total_root,
dev_root_correct * 100 / dev_total_root, best_epoch))
logger.info(
'----------------------------------------------------------------------------------------------------------------------------'
)
logger.info(
'best test W. Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)'
% (test_ucorrect, test_lcorrect, test_total, test_ucorrect * 100 /
test_total, test_lcorrect * 100 / test_total,
test_ucomlpete_match * 100 / test_total_inst,
test_lcomplete_match * 100 / test_total_inst, best_epoch))
logger.info(
'best test Wo Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)'
%
(test_ucorrect_nopunc, test_lcorrect_nopunc, test_total_nopunc,
test_ucorrect_nopunc * 100 / test_total_nopunc,
test_lcorrect_nopunc * 100 / test_total_nopunc,
test_ucomlpete_match_nopunc * 100 / test_total_inst,
test_lcomplete_match_nopunc * 100 / test_total_inst, best_epoch))
logger.info(
'best test Root: corr: %d, total: %d, acc: %.2f%% (epoch: %d)' %
(test_root_correct, test_total_root,
test_root_correct * 100 / test_total_root, best_epoch))
logger.info(
'============================================================================================================================'
)
if decay == max_decay:
break
def main():
args_parser = argparse.ArgumentParser(description='Tuning with stack pointer parser')
args_parser.add_argument('--mode', choices=['RNN', 'LSTM', 'GRU', 'FastLSTM'], help='architecture of rnn', required=True)
args_parser.add_argument('--num_epochs', type=int, default=200, help='Number of training epochs')
args_parser.add_argument('--batch_size', type=int, default=64, help='Number of sentences in each batch')
args_parser.add_argument('--decoder_input_size', type=int, default=256, help='Number of input units in decoder RNN.')
args_parser.add_argument('--hidden_size', type=int, default=256, help='Number of hidden units in RNN')
args_parser.add_argument('--arc_space', type=int, default=128, help='Dimension of tag space')
args_parser.add_argument('--type_space', type=int, default=128, help='Dimension of tag space')
args_parser.add_argument('--encoder_layers', type=int, default=1, help='Number of layers of encoder RNN')
args_parser.add_argument('--decoder_layers', type=int, default=1, help='Number of layers of decoder RNN')
args_parser.add_argument('--num_filters', type=int, default=50, help='Number of filters in CNN')
args_parser.add_argument('--pos', action='store_true', help='use part-of-speech embedding.')
args_parser.add_argument('--char', action='store_true', help='use character embedding and CNN.')
args_parser.add_argument('--lemma', action='store_true', help='use lemma embedding.')
args_parser.add_argument('--pos_dim', type=int, default=50, help='Dimension of POS embeddings')
args_parser.add_argument('--char_dim', type=int, default=50, help='Dimension of Character embeddings')
args_parser.add_argument('--lemma_dim', type=int, default=50, help='Dimension of Lemma embeddings')
args_parser.add_argument('--opt', choices=['adam', 'sgd', 'adamax'], help='optimization algorithm')
args_parser.add_argument('--learning_rate', type=float, default=0.001, help='Learning rate')
args_parser.add_argument('--decay_rate', type=float, default=0.75, help='Decay rate of learning rate')
args_parser.add_argument('--max_decay', type=int, default=9, help='Number of decays before stop')
args_parser.add_argument('--double_schedule_decay', type=int, default=5, help='Number of decays to double schedule')
args_parser.add_argument('--clip', type=float, default=5.0, help='gradient clipping')
args_parser.add_argument('--gamma', type=float, default=0.0, help='weight for regularization')
args_parser.add_argument('--epsilon', type=float, default=1e-8, help='epsilon for adam or adamax')
args_parser.add_argument('--coverage', type=float, default=0.0, help='weight for coverage loss')
args_parser.add_argument('--p_rnn', nargs=2, type=float, required=True, help='dropout rate for RNN')
args_parser.add_argument('--p_in', type=float, default=0.33, help='dropout rate for input embeddings')
args_parser.add_argument('--p_out', type=float, default=0.33, help='dropout rate for output layer')
args_parser.add_argument('--label_smooth', type=float, default=1.0, help='weight of label smoothing method')
args_parser.add_argument('--skipConnect', action='store_true', help='use skip connection for decoder RNN.')
args_parser.add_argument('--grandPar', action='store_true', help='use grand parent.')
args_parser.add_argument('--sibling', action='store_true', help='use sibling.')
args_parser.add_argument('--prior_order', choices=['inside_out', 'left2right', 'deep_first', 'shallow_first'], help='prior order of children.', required=False)
args_parser.add_argument('--schedule', type=int, help='schedule for learning rate decay')
args_parser.add_argument('--unk_replace', type=float, default=0., help='The rate to replace a singleton word with UNK')
args_parser.add_argument('--punctuation', nargs='+', type=str, help='List of punctuations')
args_parser.add_argument('--beam', type=int, default=1, help='Beam size for decoding')
args_parser.add_argument('--word_embedding', choices=['glove', 'senna', 'sskip', 'polyglot'], help='Embedding for words', required=True)
args_parser.add_argument('--word_path', help='path for word embedding dict')
args_parser.add_argument('--freeze', action='store_true', help='frozen the word embedding (disable fine-tuning).')
args_parser.add_argument('--char_embedding', choices=['random', 'polyglot'], help='Embedding for characters', required=True)
args_parser.add_argument('--char_path', help='path for character embedding dict')
args_parser.add_argument('--train') # "data/POS-penn/wsj/split1/wsj1.train.original"
args_parser.add_argument('--dev') # "data/POS-penn/wsj/split1/wsj1.dev.original"
args_parser.add_argument('--test') # "data/POS-penn/wsj/split1/wsj1.test.original"
args_parser.add_argument('--test2')
args_parser.add_argument('--model_path', help='path for saving model file.', required=True)
args_parser.add_argument('--model_name', help='name for saving model file.', required=True)
args = args_parser.parse_args()
logger = get_logger("PtrParser")
print('SEMANTIC DEPENDENCY PARSER with POINTER NETWORKS')
print('CUDA?', torch.cuda.is_available())
mode = args.mode
train_path = args.train
dev_path = args.dev
test_path = args.test
test_path2 = args.test2
model_path = args.model_path
model_name = args.model_name
num_epochs = args.num_epochs
batch_size = args.batch_size
input_size_decoder = args.decoder_input_size
hidden_size = args.hidden_size
arc_space = args.arc_space
type_space = args.type_space
encoder_layers = args.encoder_layers
decoder_layers = args.decoder_layers
num_filters = args.num_filters
learning_rate = args.learning_rate
opt = args.opt
momentum = 0.9
betas = (0.9, 0.9)
eps = args.epsilon
decay_rate = args.decay_rate
clip = args.clip
gamma = args.gamma
cov = args.coverage
schedule = args.schedule
p_rnn = tuple(args.p_rnn)
p_in = args.p_in
p_out = args.p_out
label_smooth = args.label_smooth
unk_replace = args.unk_replace
prior_order = args.prior_order
skipConnect = args.skipConnect
grandPar = args.grandPar
sibling = args.sibling
beam = args.beam
punctuation = args.punctuation
freeze = args.freeze
word_embedding = args.word_embedding
word_path = args.word_path
use_char = args.char
char_embedding = args.char_embedding
char_path = args.char_path
use_pos = args.pos
pos_dim = args.pos_dim
use_lemma = args.lemma
lemma_dim = args.lemma_dim
word_dict, word_dim = utils.load_embedding_dict(word_embedding, word_path)
char_dict = None
char_dim = args.char_dim
if char_embedding != 'random':
char_dict, char_dim = utils.load_embedding_dict(char_embedding, char_path)
logger.info("Creating Alphabets")
alphabet_path = os.path.join(model_path, 'alphabets/')
model_name = os.path.join(model_path, model_name)
word_alphabet, char_alphabet, pos_alphabet, type_alphabet, lemma_alphabet = conllx_stacked_data.create_alphabets(alphabet_path, train_path, data_paths=[dev_path, test_path, test_path2],
max_vocabulary_size=50000, embedd_dict=word_dict)
num_words = word_alphabet.size()
num_chars = char_alphabet.size()
num_pos = pos_alphabet.size()
num_types = type_alphabet.size()
num_lemmas = lemma_alphabet.size()
logger.info("Word Alphabet Size: %d" % num_words)
logger.info("Character Alphabet Size: %d" % num_chars)
logger.info("POS Alphabet Size: %d" % num_pos)
logger.info("Type Alphabet Size: %d" % num_types)
logger.info("LEMMA Alphabet Size: %d" % num_lemmas)
logger.info("Reading Data")
use_gpu = torch.cuda.is_available()
data_train = conllx_stacked_data.read_stacked_data_to_variable(train_path, word_alphabet, char_alphabet, pos_alphabet, type_alphabet, lemma_alphabet, use_gpu=use_gpu, prior_order=prior_order)
num_data = sum(data_train[1])
data_dev = conllx_stacked_data.read_stacked_data_to_variable(dev_path, word_alphabet, char_alphabet, pos_alphabet, type_alphabet, lemma_alphabet, use_gpu=use_gpu, volatile=True, prior_order=prior_order)
data_test = conllx_stacked_data.read_stacked_data_to_variable(test_path, word_alphabet, char_alphabet, pos_alphabet, type_alphabet, lemma_alphabet, use_gpu=use_gpu, volatile=True, prior_order=prior_order)
data_test2 = conllx_stacked_data.read_stacked_data_to_variable(test_path2, word_alphabet, char_alphabet, pos_alphabet, type_alphabet, lemma_alphabet, use_gpu=use_gpu, volatile=True, prior_order=prior_order)
punct_set = None
if punctuation is not None:
punct_set = set(punctuation)
#logger.info("punctuations(%d): %s" % (len(punct_set), ' '.join(punct_set)))
def construct_word_embedding_table():
scale = np.sqrt(3.0 / word_dim)
table = np.empty([word_alphabet.size(), word_dim], dtype=np.float32)
table[conllx_stacked_data.UNK_ID, :] = np.zeros([1, word_dim]).astype(np.float32) if freeze else np.random.uniform(-scale, scale, [1, word_dim]).astype(np.float32)
oov = 0
for word, index in word_alphabet.items():
if word in word_dict:
embedding = word_dict[word]
elif word.lower() in word_dict:
embedding = word_dict[word.lower()]
else:
embedding = np.zeros([1, word_dim]).astype(np.float32) if freeze else np.random.uniform(-scale, scale, [1, word_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('word OOV: %d' % oov)
print(torch.__version__)
return torch.from_numpy(table)
def construct_lemma_embedding_table():
scale = np.sqrt(3.0 / lemma_dim)
table = np.empty([lemma_alphabet.size(), lemma_dim], dtype=np.float32)
table[conllx_stacked_data.UNK_ID, :] = np.zeros([1, lemma_dim]).astype(np.float32) if freeze else np.random.uniform(-scale, scale, [1, lemma_dim]).astype(np.float32)
oov = 0
for lemma, index in lemma_alphabet.items():
if lemma in word_dict:
embedding = word_dict[lemma]
elif lemma.lower() in word_dict:
embedding = word_dict[lemma.lower()]
else:
embedding = np.zeros([1, lemma_dim]).astype(np.float32) if freeze else np.random.uniform(-scale, scale, [1, lemma_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('LEMMA OOV: %d' % oov)
print(torch.__version__)
return torch.from_numpy(table)
def construct_char_embedding_table():
if char_dict is None:
return None
scale = np.sqrt(3.0 / char_dim)
table = np.empty([num_chars, char_dim], dtype=np.float32)
table[conllx_stacked_data.UNK_ID, :] = np.random.uniform(-scale, scale, [1, char_dim]).astype(np.float32)
oov = 0
for char, index, in char_alphabet.items():
if char in char_dict:
embedding = char_dict[char]
else:
embedding = np.random.uniform(-scale, scale, [1, char_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('character OOV: %d' % oov)
return torch.from_numpy(table)
word_table = construct_word_embedding_table()
char_table = construct_char_embedding_table()
lemma_table = construct_lemma_embedding_table()
window = 3
network = NewStackPtrNet(word_dim, num_words, lemma_dim, num_lemmas, char_dim, num_chars, pos_dim, num_pos, num_filters, window,
mode, input_size_decoder, hidden_size, encoder_layers, decoder_layers,
num_types, arc_space, type_space,
embedd_word=word_table, embedd_char=char_table, embedd_lemma=lemma_table, p_in=p_in, p_out=p_out, p_rnn=p_rnn,
biaffine=True, pos=use_pos, char=use_char, lemma=use_lemma, prior_order=prior_order,
skipConnect=skipConnect, grandPar=grandPar, sibling=sibling)
def save_args():
arg_path = model_name + '.arg.json'
arguments = [word_dim, num_words, lemma_dim, num_lemmas, char_dim, num_chars, pos_dim, num_pos, num_filters, window,
mode, input_size_decoder, hidden_size, encoder_layers, decoder_layers,
num_types, arc_space, type_space]
kwargs = {'p_in': p_in, 'p_out': p_out, 'p_rnn': p_rnn, 'biaffine': True, 'pos': use_pos, 'char': use_char, 'lemma': use_lemma, 'prior_order': prior_order,
'skipConnect': skipConnect, 'grandPar': grandPar, 'sibling': sibling}
json.dump({'args': arguments, 'kwargs': kwargs}, open(arg_path, 'w'), indent=4)
if freeze:
network.word_embedd.freeze()
if use_gpu:
print('CUDA IS AVAILABLE')
network.cuda()
else:
print('CUDA IS NOT AVAILABLE', use_gpu)
save_args()
pred_writer = CoNLLXWriter(word_alphabet, lemma_alphabet, char_alphabet, pos_alphabet, type_alphabet)
gold_writer = CoNLLXWriter(word_alphabet, lemma_alphabet, char_alphabet, pos_alphabet, type_alphabet)
def generate_optimizer(opt, lr, params):
params = filter(lambda param: param.requires_grad, params)
if opt == 'adam':
return Adam(params, lr=lr, betas=betas, weight_decay=gamma, eps=eps)
elif opt == 'sgd':
return SGD(params, lr=lr, momentum=momentum, weight_decay=gamma, nesterov=True)
elif opt == 'adamax':
return Adamax(params, lr=lr, betas=betas, weight_decay=gamma, eps=eps)
else:
raise ValueError('Unknown optimization algorithm: %s' % opt)
lr = learning_rate
optim = generate_optimizer(opt, lr, network.parameters())
opt_info = 'opt: %s, ' % opt
if opt == 'adam':
opt_info += 'betas=%s, eps=%.1e' % (betas, eps)
elif opt == 'sgd':
opt_info += 'momentum=%.2f' % momentum
elif opt == 'adamax':
opt_info += 'betas=%s, eps=%.1e' % (betas, eps)
word_status = 'frozen' if freeze else 'fine tune'
char_status = 'enabled' if use_char else 'disabled'
pos_status = 'enabled' if use_pos else 'disabled'
lemma_status = 'enabled' if use_lemma else 'disabled'
logger.info("Embedding dim: word=%d (%s), lemma=%d (%s) char=%d (%s), pos=%d (%s)" % (word_dim, word_status, lemma_dim, lemma_status, char_dim, char_status, pos_dim, pos_status))
logger.info("CNN: filter=%d, kernel=%d" % (num_filters, window))
logger.info("RNN: %s, num_layer=(%d, %d), input_dec=%d, hidden=%d, arc_space=%d, type_space=%d" % (mode, encoder_layers, decoder_layers, input_size_decoder, hidden_size, arc_space, type_space))
logger.info("train: cov: %.1f, (#data: %d, batch: %d, clip: %.2f, label_smooth: %.2f, unk_repl: %.2f)" % (cov, num_data, batch_size, clip, label_smooth, unk_replace))
logger.info("dropout(in, out, rnn): (%.2f, %.2f, %s)" % (p_in, p_out, p_rnn))
logger.info('prior order: %s, grand parent: %s, sibling: %s, ' % (prior_order, grandPar, sibling))
logger.info('skip connect: %s, beam: %d' % (skipConnect, beam))
logger.info(opt_info)
num_batches = num_data / batch_size + 1
#dev_ucorrect = 0.0
dev_bestLF1 = 0.0
dev_bestUF1 = 0.0
dev_bestUprecision = 0.0
dev_bestLprecision = 0.0
dev_bestUrecall = 0.0
dev_bestLrecall = 0.0
best_epoch = 0
test_ucorrect = 0.0
test_lcorrect = 0.0
#test_ucomlpete_match = 0.0
#test_lcomplete_match = 0.0
#test_ucorrect_nopunc = 0.0
#test_lcorrect_nopunc = 0.0
#test_ucomlpete_match_nopunc = 0.0
#test_lcomplete_match_nopunc = 0.0
#test_root_correct = 0.0
test_total_pred = 0
test_total_gold = 0
#test_total_nopunc = 0
test_total_inst = 0
#test_total_root = 0
test_LF1 = 0.0
test_UF1 = 0.0
test_Uprecision = 0.0
test_Lprecision = 0.0
test_Urecall = 0.0
test_Lrecall = 0.0
test2_ucorrect = 0.0
test2_lcorrect = 0.0
test2_total_pred = 0
test2_total_gold = 0
test2_total_inst = 0
test2_LF1 = 0.0
test2_UF1 = 0.0
test2_Uprecision = 0.0
test2_Lprecision = 0.0
test2_Urecall = 0.0
test2_Lrecall = 0.0
patient = 0
decay = 0
max_decay = args.max_decay
double_schedule_decay = args.double_schedule_decay
for epoch in range(1, num_epochs + 1):
print('Epoch %d (%s, optim: %s, learning rate=%.6f, eps=%.1e, decay rate=%.2f (schedule=%d, patient=%d, decay=%d (%d, %d))): ' % (
epoch, mode, opt, lr, eps, decay_rate, schedule, patient, decay, max_decay, double_schedule_decay))
train_err_cov = 0.
train_err_arc = 0.
train_err_type = 0.
train_total = 0.
start_time = time.time()
num_back = 0
network.train()
for batch in range(1, num_batches + 1):
input_encoder, input_decoder = conllx_stacked_data.get_batch_stacked_variable(data_train, batch_size, unk_replace=unk_replace)
word, lemma, char, pos, heads, types, masks_e, lengths_e = input_encoder
stacked_heads, children, sibling, stacked_types, skip_connect, previous, next, masks_d, lengths_d = input_decoder
#print('HEADSSS', heads)
optim.zero_grad()
loss_arc, \
loss_type, \
loss_cov, num = network.loss(word, lemma, char, pos, heads, stacked_heads, children, sibling, stacked_types, previous, next, label_smooth,
skip_connect=skip_connect, mask_e=masks_e, length_e=lengths_e, mask_d=masks_d, length_d=lengths_d)
loss = loss_arc + loss_type + cov * loss_cov
loss.backward()
clip_grad_norm(network.parameters(), clip)
optim.step()
train_err_arc += loss_arc.data[0] * num
train_err_type += loss_type.data[0] * num
train_err_cov += loss_cov.data[0] * num
train_total += num
time_ave = (time.time() - start_time) / batch
time_left = (num_batches - batch) * time_ave
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
err_arc = train_err_arc / train_total
err_type = train_err_type / train_total
err_cov = train_err_cov / train_total
err = err_arc + err_type + cov * err_cov
print('train: %d loss: %.4f, arc: %.4f, type: %.4f, coverage: %.4f, time: %.2fs' % (
num_batches, err, err_arc, err_type, err_cov, time.time() - start_time))
print('======EVALUATING PERFORMANCE ON DEV======')
# evaluate performance on dev data
network.eval()
#pred_filename = 'tmp/%spred_dev%d' % (str(uid), epoch)
pred_filename = '%spred_dev%d' % (str(uid), epoch)
pred_filename = os.path.join(model_path, pred_filename)
pred_writer.start(pred_filename)
#gold_filename = 'tmp/%sgold_dev%d' % (str(uid), epoch)
gold_filename = '%sgold_dev%d' % (str(uid), epoch)
gold_filename = os.path.join(model_path, gold_filename)
gold_writer.start(gold_filename)
dev_ucorr = 0.0
dev_lcorr = 0.0
dev_total_gold = 0
dev_total_pred = 0
dev_total_inst = 0.0
start_time_dev = time.time()
for batch in conllx_stacked_data.iterate_batch_stacked_variable(data_dev, batch_size):
input_encoder, _ = batch
word, lemma, char, pos, heads, types, masks, lengths = input_encoder
heads_pred, types_pred, _, _ = network.decode(word, lemma, char, pos, mask=masks, length=lengths, beam=beam, leading_symbolic=conllx_stacked_data.NUM_SYMBOLIC_TAGS)
word = word.data.cpu().numpy()
lemma = lemma.data.cpu().numpy()
pos = pos.data.cpu().numpy()
lengths = lengths.cpu().numpy()
heads = heads.data.cpu().numpy()
types = types.data.cpu().numpy()
pred_writer.write(word, lemma, pos, heads_pred, types_pred, lengths, symbolic_root=True)
gold_writer.write(word, lemma, pos, heads, types, lengths, symbolic_root=True)
#stats, stats_nopunc, stats_root, num_inst = parser.evalF1(word, pos, heads_pred, types_pred, heads, types, word_alphabet, pos_alphabet, lengths, punct_set=punct_set, symbolic_root=True)
#ucorr, lcorr, total, ucm, lcm = stats
#ucorr_nopunc, lcorr_nopunc, total_nopunc, ucm_nopunc, lcm_nopunc = stats_nopunc
#corr_root, total_root = stats_root
ucorr, lcorr, total_gold, total_pred, num_inst = parser.evalF1(word, lemma, pos, heads_pred, types_pred, heads, types, word_alphabet, lemma_alphabet, pos_alphabet, lengths, punct_set=punct_set, symbolic_root=True)
dev_ucorr += ucorr
dev_lcorr += lcorr
dev_total_gold += total_gold
dev_total_pred += total_pred
dev_total_inst += num_inst
end_time_dev = time.time()
lasted_time_dev=end_time_dev-start_time_dev
pred_writer.close()
gold_writer.close()
dev_Uprecision=0.
dev_Lprecision=0.
if dev_total_pred!=0:
dev_Uprecision=dev_ucorr * 100 / dev_total_pred
dev_Lprecision=dev_lcorr * 100 / dev_total_pred
dev_Urecall=dev_ucorr * 100 / dev_total_gold
dev_Lrecall=dev_lcorr * 100 / dev_total_gold
if dev_Uprecision ==0. and dev_Urecall==0.:
dev_UF1=0
else:
dev_UF1=2*(dev_Uprecision*dev_Urecall)/(dev_Uprecision+dev_Urecall)
if dev_Lprecision ==0. and dev_Lrecall==0.:
dev_LF1=0
else:
dev_LF1=2*(dev_Lprecision*dev_Lrecall)/(dev_Lprecision+dev_Lrecall)
print('CUR DEV %d: ucorr: %d, lcorr: %d, tot_gold: %d, tot_pred: %d, Uprec: %.2f%%, Urec: %.2f%%, Lprec: %.2f%%, Lrec: %.2f%%, UF1: %.2f%%, LF1: %.2f%%' % (
epoch, dev_ucorr, dev_lcorr, dev_total_gold, dev_total_pred, dev_Uprecision, dev_Urecall, dev_Lprecision, dev_Lrecall, dev_UF1, dev_LF1))
#if dev_lcorrect_nopunc < dev_lcorr_nopunc or (dev_lcorrect_nopunc == dev_lcorr_nopunc and dev_ucorrect_nopunc < dev_ucorr_nopunc):
if dev_bestLF1 < dev_LF1:
dev_bestLF1 = dev_LF1
dev_bestUF1 = dev_UF1
dev_bestUprecision = dev_Uprecision
dev_bestLprecision = dev_Lprecision
dev_bestUrecall = dev_Urecall
dev_bestLrecall = dev_Lrecall
best_epoch = epoch
patient = 0
# torch.save(network, model_name)
torch.save(network.state_dict(), model_name)
print('======EVALUATING PERFORMANCE ON TEST======')
#pred_filename = 'tmp/%spred_test%d' % (str(uid), epoch)
pred_filename = '%spred_test%d' % (str(uid), epoch)
pred_filename = os.path.join(model_path, pred_filename)
pred_writer.start(pred_filename)
#gold_filename = 'tmp/%sgold_test%d' % (str(uid), epoch)
gold_filename = '%sgold_test%d' % (str(uid), epoch)
gold_filename = os.path.join(model_path, gold_filename)
gold_writer.start(gold_filename)
test_ucorrect = 0.0
test_lcorrect = 0.0
test_total_pred = 0
test_total_gold = 0
test_total_inst = 0
start_time_test = time.time()
for batch in conllx_stacked_data.iterate_batch_stacked_variable(data_test, batch_size):
input_encoder, _ = batch
word, lemma, char, pos, heads, types, masks, lengths = input_encoder
heads_pred, types_pred, _, _ = network.decode(word, lemma, char, pos, mask=masks, length=lengths, beam=beam, leading_symbolic=conllx_stacked_data.NUM_SYMBOLIC_TAGS)
word = word.data.cpu().numpy()
lemma = lemma.data.cpu().numpy()
pos = pos.data.cpu().numpy()
lengths = lengths.cpu().numpy()
heads = heads.data.cpu().numpy()
types = types.data.cpu().numpy()
pred_writer.write(word, lemma, pos, heads_pred, types_pred, lengths, symbolic_root=True)
gold_writer.write(word, lemma, pos, heads, types, lengths, symbolic_root=True)
ucorr, lcorr, total_gold, total_pred, num_inst = parser.evalF1(word, lemma, pos, heads_pred, types_pred, heads, types, word_alphabet, lemma_alphabet, pos_alphabet, lengths, punct_set=punct_set, symbolic_root=True)
test_ucorrect += ucorr
test_lcorrect += lcorr
test_total_gold += total_gold
test_total_pred += total_pred
test_total_inst += num_inst
end_time_test = time.time()
lasted_time_test=end_time_test-start_time_test
pred_writer.close()
gold_writer.close()
test_Uprecision=0.
test_Lprecision=0.
if test_total_pred!=0:
test_Uprecision=test_ucorrect * 100 / test_total_pred
test_Lprecision=test_lcorrect * 100 / test_total_pred
test_Urecall=test_ucorrect * 100 / test_total_gold
test_Lrecall=test_lcorrect * 100 / test_total_gold
if test_Uprecision ==0. and test_Urecall==0.:
test_UF1=0
else:
test_UF1=2*(test_Uprecision*test_Urecall)/(test_Uprecision+test_Urecall)
if test_Lprecision ==0. and test_Lrecall==0.:
test_LF1=0
else:
test_LF1=2*(test_Lprecision*test_Lrecall)/(test_Lprecision+test_Lrecall)
print('======EVALUATING PERFORMANCE ON TEST 2======')
#pred_filename = 'tmp/%spred_test%d' % (str(uid), epoch)
pred_filename2 = '%spred_test_two%d' % (str(uid), epoch)
pred_filename2 = os.path.join(model_path, pred_filename2)
pred_writer.start(pred_filename2)
#gold_filename = 'tmp/%sgold_test%d' % (str(uid), epoch)
gold_filename2 = '%sgold_test_two%d' % (str(uid), epoch)
gold_filename2 = os.path.join(model_path, gold_filename2)
gold_writer.start(gold_filename2)
test2_ucorrect = 0.0
test2_lcorrect = 0.0
test2_total_pred = 0
test2_total_gold = 0
test2_total_inst = 0
start_time_test2 = time.time()
for batch in conllx_stacked_data.iterate_batch_stacked_variable(data_test2, batch_size):
input_encoder, _ = batch
word, lemma, char, pos, heads, types, masks, lengths = input_encoder
heads_pred, types_pred, _, _ = network.decode(word, lemma, char, pos, mask=masks, length=lengths, beam=beam, leading_symbolic=conllx_stacked_data.NUM_SYMBOLIC_TAGS)
word = word.data.cpu().numpy()
lemma = lemma.data.cpu().numpy()
pos = pos.data.cpu().numpy()
lengths = lengths.cpu().numpy()
heads = heads.data.cpu().numpy()
types = types.data.cpu().numpy()
pred_writer.write(word, lemma, pos, heads_pred, types_pred, lengths, symbolic_root=True)
gold_writer.write(word, lemma, pos, heads, types, lengths, symbolic_root=True)
ucorr, lcorr, total_gold, total_pred, num_inst = parser.evalF1(word, lemma, pos, heads_pred, types_pred, heads, types, word_alphabet, lemma_alphabet, pos_alphabet, lengths, punct_set=punct_set, symbolic_root=True)
test2_ucorrect += ucorr
test2_lcorrect += lcorr
test2_total_gold += total_gold
test2_total_pred += total_pred
test2_total_inst += num_inst
end_time_test2 = time.time()
lasted_time_test2=end_time_test2-start_time_test2
pred_writer.close()
gold_writer.close()
test2_Uprecision=0.
test2_Lprecision=0.
if dev_total_pred!=0:
test2_Uprecision=test2_ucorrect * 100 / test2_total_pred
test2_Lprecision=test2_lcorrect * 100 / test2_total_pred
test2_Urecall=test2_ucorrect * 100 / test2_total_gold
test2_Lrecall=test2_lcorrect * 100 / test2_total_gold
if test2_Uprecision ==0. and test2_Urecall==0.:
test2_UF1=0.
else:
test2_UF1=2*(test2_Uprecision*test2_Urecall)/(test2_Uprecision+test2_Urecall)
if test2_Lprecision ==0 and test2_Lrecall==0:
test2_LF1=0.
else:
test2_LF1=2*(test2_Lprecision*test2_Lrecall)/(test2_Lprecision+test2_Lrecall)
else:
#if dev_ucorr_nopunc * 100 / dev_total_nopunc < dev_ucorrect_nopunc * 100 / dev_total_nopunc - 5 or patient >= schedule:
if dev_LF1 < dev_bestLF1 - 5 or patient >= schedule:
# network = torch.load(model_name)
network.load_state_dict(torch.load(model_name))
lr = lr * decay_rate
optim = generate_optimizer(opt, lr, network.parameters())
patient = 0
decay += 1
if decay % double_schedule_decay == 0:
schedule *= 2
else:
patient += 1
print('----------------------------------------------------------------------------------------------------------------------------')
print('TIME DEV: ', lasted_time_dev, 'NUM SENTS DEV: ', dev_total_inst, 'SPEED DEV: ', dev_total_inst/lasted_time_dev)
print('DEV: Uprec: %.2f%%, Urec: %.2f%%, Lprec: %.2f%%, Lrec: %.2f%%, UF1: %.2f%%, LF1: %.2f%% (epoch: %d)' % (
dev_bestUprecision, dev_bestUrecall, dev_bestLprecision, dev_bestLrecall, dev_bestUF1, dev_bestLF1, best_epoch))
print('----------------------------------------------------------------------------------------------------------------------------')
print('TIME TEST: ', lasted_time_test, 'NUM SENTS TEST: ', test_total_inst, 'SPEED TEST: ', test_total_inst/lasted_time_test)
print('TEST: ucorr: %d, lcorr: %d, tot_gold: %d, tot_pred: %d, Uprec: %.2f%%, Urec: %.2f%%, Lprec: %.2f%%, Lrec: %.2f%%, UF1: %.2f%%, LF1: %.2f%% (epoch: %d)' % (
test_ucorrect, test_lcorrect, test_total_gold, test_total_pred, test_Uprecision, test_Urecall, test_Lprecision, test_Lrecall, test_UF1, test_LF1, best_epoch))
print('----------------------------------------------------------------------------------------------------------------------------')
print('TIME TEST2: ', lasted_time_test2, 'NUM SENTS TEST: ', test2_total_inst, 'SPEED TEST2: ', test2_total_inst/lasted_time_test2)
print('TEST2: ucorr: %d, lcorr: %d, tot_gold: %d, tot_pred: %d, Uprec: %.2f%%, Urec: %.2f%%, Lprec: %.2f%%, Lrec: %.2f%%, UF1: %.2f%%, LF1: %.2f%% (epoch: %d)' % (
test2_ucorrect, test2_lcorrect, test2_total_gold, test2_total_pred, test2_Uprecision, test2_Urecall, test2_Lprecision, test2_Lrecall, test2_UF1, test2_LF1, best_epoch))
print('============================================================================================================================')
#exit(0)
if decay == max_decay:
break
def main():
args_parser = argparse.ArgumentParser(description='Tuning with graph-based parsing')
args_parser.add_argument('--test_phase', action='store_true', help='Load trained model and run testing phase.')
args_parser.add_argument('--mode', choices=['RNN', 'LSTM', 'GRU', 'FastLSTM'], help='architecture of rnn', required=True)
args_parser.add_argument('--cuda', action='store_true', help='using GPU')
args_parser.add_argument('--num_epochs', type=int, default=200, help='Number of training epochs')
args_parser.add_argument('--batch_size', type=int, default=64, help='Number of sentences in each batch')
args_parser.add_argument('--hidden_size', type=int, default=256, help='Number of hidden units in RNN')
args_parser.add_argument('--arc_space', type=int, default=128, help='Dimension of tag space')
args_parser.add_argument('--type_space', type=int, default=128, help='Dimension of tag space')
args_parser.add_argument('--num_layers', type=int, default=1, help='Number of layers of RNN')
args_parser.add_argument('--num_filters', type=int, default=50, help='Number of filters in CNN')
args_parser.add_argument('--pos', action='store_true', help='use part-of-speech embedding.')
args_parser.add_argument('--char', action='store_true', help='use character embedding and CNN.')
args_parser.add_argument('--pos_dim', type=int, default=50, help='Dimension of POS embeddings')
args_parser.add_argument('--char_dim', type=int, default=50, help='Dimension of Character embeddings')
args_parser.add_argument('--opt', choices=['adam', 'sgd', 'adamax'], help='optimization algorithm')
args_parser.add_argument('--objective', choices=['cross_entropy', 'crf'], default='cross_entropy', help='objective function of training procedure.')
args_parser.add_argument('--decode', choices=['mst', 'greedy'], help='decoding algorithm', required=True)
args_parser.add_argument('--learning_rate', type=float, default=0.01, help='Learning rate')
args_parser.add_argument('--decay_rate', type=float, default=0.05, help='Decay rate of learning rate')
args_parser.add_argument('--clip', type=float, default=5.0, help='gradient clipping')
args_parser.add_argument('--gamma', type=float, default=0.0, help='weight for regularization')
args_parser.add_argument('--epsilon', type=float, default=1e-8, help='epsilon for adam or adamax')
args_parser.add_argument('--p_rnn', nargs=2, type=float, required=True, help='dropout rate for RNN')
args_parser.add_argument('--p_in', type=float, default=0.33, help='dropout rate for input embeddings')
args_parser.add_argument('--p_out', type=float, default=0.33, help='dropout rate for output layer')
args_parser.add_argument('--schedule', type=int, help='schedule for learning rate decay')
args_parser.add_argument('--unk_replace', type=float, default=0., help='The rate to replace a singleton word with UNK')
args_parser.add_argument('--punctuation', nargs='+', type=str, help='List of punctuations')
args_parser.add_argument('--word_embedding', choices=['glove', 'senna', 'sskip', 'polyglot'], help='Embedding for words', required=True)
args_parser.add_argument('--word_path', help='path for word embedding dict')
args_parser.add_argument('--freeze', action='store_true', help='frozen the word embedding (disable fine-tuning).')
args_parser.add_argument('--char_embedding', choices=['random', 'polyglot'], help='Embedding for characters', required=True)
args_parser.add_argument('--char_path', help='path for character embedding dict')
args_parser.add_argument('--train') # "data/POS-penn/wsj/split1/wsj1.train.original"
args_parser.add_argument('--dev') # "data/POS-penn/wsj/split1/wsj1.dev.original"
args_parser.add_argument('--test') # "data/POS-penn/wsj/split1/wsj1.test.original"
args_parser.add_argument('--model_path', help='path for saving model file.', required=True)
args_parser.add_argument('--model_name', help='name for saving model file.', required=True)
args = args_parser.parse_args()
logger = get_logger("GraphParser")
mode = args.mode
obj = args.objective
decoding = args.decode
train_path = args.train
dev_path = args.dev
test_path = args.test
model_path = args.model_path
model_name = args.model_name
num_epochs = args.num_epochs
batch_size = args.batch_size
hidden_size = args.hidden_size
arc_space = args.arc_space
type_space = args.type_space
num_layers = args.num_layers
num_filters = args.num_filters
learning_rate = args.learning_rate
opt = args.opt
momentum = 0.9
betas = (0.9, 0.9)
eps = args.epsilon
decay_rate = args.decay_rate
clip = args.clip
gamma = args.gamma
schedule = args.schedule
p_rnn = tuple(args.p_rnn)
p_in = args.p_in
p_out = args.p_out
unk_replace = args.unk_replace
punctuation = args.punctuation
freeze = args.freeze
word_embedding = args.word_embedding
word_path = args.word_path
use_char = args.char
char_embedding = args.char_embedding
char_path = args.char_path
use_pos = args.pos
pos_dim = args.pos_dim
word_dict, word_dim = utils.load_embedding_dict(word_embedding, word_path)
char_dict = None
char_dim = args.char_dim
if char_embedding != 'random':
char_dict, char_dim = utils.load_embedding_dict(char_embedding, char_path)
logger.info("Creating Alphabets")
alphabet_path = os.path.join(model_path, 'alphabets/')
model_name = os.path.join(model_path, model_name)
word_alphabet, char_alphabet, pos_alphabet, type_alphabet = conllx_data.create_alphabets(alphabet_path, train_path, data_paths=[dev_path, test_path],
max_vocabulary_size=100000, embedd_dict=word_dict)
num_words = word_alphabet.size()
num_chars = char_alphabet.size()
num_pos = pos_alphabet.size()
num_types = type_alphabet.size()
logger.info("Word Alphabet Size: %d" % num_words)
logger.info("Character Alphabet Size: %d" % num_chars)
logger.info("POS Alphabet Size: %d" % num_pos)
logger.info("Type Alphabet Size: %d" % num_types)
logger.info("Reading Data")
device = torch.device('cuda') if args.cuda else torch.device('cpu')
data_train = conllx_data.read_data_to_tensor(train_path, word_alphabet, char_alphabet, pos_alphabet, type_alphabet, symbolic_root=True, device=device)
# data_train = conllx_data.read_data(train_path, word_alphabet, char_alphabet, pos_alphabet, type_alphabet)
# num_data = sum([len(bucket) for bucket in data_train])
num_data = sum(data_train[1])
data_dev = conllx_data.read_data_to_tensor(dev_path, word_alphabet, char_alphabet, pos_alphabet, type_alphabet, symbolic_root=True, device=device)
data_test = conllx_data.read_data_to_tensor(test_path, word_alphabet, char_alphabet, pos_alphabet, type_alphabet, symbolic_root=True, device=device)
punct_set = None
if punctuation is not None:
punct_set = set(punctuation)
logger.info("punctuations(%d): %s" % (len(punct_set), ' '.join(punct_set)))
def construct_word_embedding_table():
scale = np.sqrt(3.0 / word_dim)
table = np.empty([word_alphabet.size(), word_dim], dtype=np.float32)
table[conllx_data.UNK_ID, :] = np.zeros([1, word_dim]).astype(np.float32) if freeze else np.random.uniform(-scale, scale, [1, word_dim]).astype(np.float32)
oov = 0
for word, index in word_alphabet.items():
if word in word_dict:
embedding = word_dict[word]
elif word.lower() in word_dict:
embedding = word_dict[word.lower()]
else:
embedding = np.zeros([1, word_dim]).astype(np.float32) if freeze else np.random.uniform(-scale, scale, [1, word_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('word OOV: %d' % oov)
return torch.from_numpy(table)
def construct_char_embedding_table():
if char_dict is None:
return None
scale = np.sqrt(3.0 / char_dim)
table = np.empty([num_chars, char_dim], dtype=np.float32)
table[conllx_data.UNK_ID, :] = np.random.uniform(-scale, scale, [1, char_dim]).astype(np.float32)
oov = 0
for char, index, in char_alphabet.items():
if char in char_dict:
embedding = char_dict[char]
else:
embedding = np.random.uniform(-scale, scale, [1, char_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('character OOV: %d' % oov)
return torch.from_numpy(table)
word_table = construct_word_embedding_table()
char_table = construct_char_embedding_table()
window = 3
if obj == 'cross_entropy':
network = BiRecurrentConvBiAffine(word_dim, num_words, char_dim, num_chars, pos_dim, num_pos, num_filters, window,
mode, hidden_size, num_layers, num_types, arc_space, type_space,
embedd_word=word_table, embedd_char=char_table,
p_in=p_in, p_out=p_out, p_rnn=p_rnn, biaffine=True, pos=use_pos, char=use_char)
elif obj == 'crf':
raise NotImplementedError
else:
raise RuntimeError('Unknown objective: %s' % obj)
def save_args():
arg_path = model_name + '.arg.json'
arguments = [word_dim, num_words, char_dim, num_chars, pos_dim, num_pos, num_filters, window,
mode, hidden_size, num_layers, num_types, arc_space, type_space]
kwargs = {'p_in': p_in, 'p_out': p_out, 'p_rnn': p_rnn, 'biaffine': True, 'pos': use_pos, 'char': use_char}
json.dump({'args': arguments, 'kwargs': kwargs}, open(arg_path, 'w'), indent=4)
if freeze:
freeze_embedding(network.word_embedd)
network = network.to(device)
save_args()
pred_writer = CoNLLXWriter(word_alphabet, char_alphabet, pos_alphabet, type_alphabet)
gold_writer = CoNLLXWriter(word_alphabet, char_alphabet, pos_alphabet, type_alphabet)
def generate_optimizer(opt, lr, params):
params = filter(lambda param: param.requires_grad, params)
if opt == 'adam':
return Adam(params, lr=lr, betas=betas, weight_decay=gamma, eps=eps)
elif opt == 'sgd':
return SGD(params, lr=lr, momentum=momentum, weight_decay=gamma, nesterov=True)
elif opt == 'adamax':
return Adamax(params, lr=lr, betas=betas, weight_decay=gamma, eps=eps)
else:
raise ValueError('Unknown optimization algorithm: %s' % opt)
lr = learning_rate
optim = generate_optimizer(opt, lr, network.parameters())
opt_info = 'opt: %s, ' % opt
if opt == 'adam':
opt_info += 'betas=%s, eps=%.1e' % (betas, eps)
elif opt == 'sgd':
opt_info += 'momentum=%.2f' % momentum
elif opt == 'adamax':
opt_info += 'betas=%s, eps=%.1e' % (betas, eps)
word_status = 'frozen' if freeze else 'fine tune'
char_status = 'enabled' if use_char else 'disabled'
pos_status = 'enabled' if use_pos else 'disabled'
logger.info("Embedding dim: word=%d (%s), char=%d (%s), pos=%d (%s)" % (word_dim, word_status, char_dim, char_status, pos_dim, pos_status))
logger.info("CNN: filter=%d, kernel=%d" % (num_filters, window))
logger.info("RNN: %s, num_layer=%d, hidden=%d, arc_space=%d, type_space=%d" % (mode, num_layers, hidden_size, arc_space, type_space))
logger.info("train: obj: %s, l2: %f, (#data: %d, batch: %d, clip: %.2f, unk replace: %.2f)" % (obj, gamma, num_data, batch_size, clip, unk_replace))
logger.info("dropout(in, out, rnn): (%.2f, %.2f, %s)" % (p_in, p_out, p_rnn))
logger.info("decoding algorithm: %s" % decoding)
logger.info(opt_info)
num_batches = num_data / batch_size + 1
dev_ucorrect = 0.0
dev_lcorrect = 0.0
dev_ucomlpete_match = 0.0
dev_lcomplete_match = 0.0
dev_ucorrect_nopunc = 0.0
dev_lcorrect_nopunc = 0.0
dev_ucomlpete_match_nopunc = 0.0
dev_lcomplete_match_nopunc = 0.0
dev_root_correct = 0.0
best_epoch = 0
test_ucorrect = 0.0
test_lcorrect = 0.0
test_ucomlpete_match = 0.0
test_lcomplete_match = 0.0
test_ucorrect_nopunc = 0.0
test_lcorrect_nopunc = 0.0
test_ucomlpete_match_nopunc = 0.0
test_lcomplete_match_nopunc = 0.0
test_root_correct = 0.0
test_total = 0
test_total_nopunc = 0
test_total_inst = 0
test_total_root = 0
if decoding == 'greedy':
decode = network.decode
elif decoding == 'mst':
decode = network.decode_mst
else:
raise ValueError('Unknown decoding algorithm: %s' % decoding)
patient = 0
decay = 0
max_decay = 9
double_schedule_decay = 5
for epoch in range(1, num_epochs + 1):
print('Epoch %d (%s, optim: %s, learning rate=%.6f, eps=%.1e, decay rate=%.2f (schedule=%d, patient=%d, decay=%d)): ' % (epoch, mode, opt, lr, eps, decay_rate, schedule, patient, decay))
train_err = 0.
train_err_arc = 0.
train_err_type = 0.
train_total = 0.
start_time = time.time()
num_back = 0
network.train()
for batch in range(1, num_batches + 1):
word, char, pos, heads, types, masks, lengths = conllx_data.get_batch_tensor(data_train, batch_size, unk_replace=unk_replace)
optim.zero_grad()
loss_arc, loss_type = network.loss(word, char, pos, heads, types, mask=masks, length=lengths)
loss = loss_arc + loss_type
loss.backward()
clip_grad_norm_(network.parameters(), clip)
optim.step()
with torch.no_grad():
num_inst = word.size(0) if obj == 'crf' else masks.sum() - word.size(0)
train_err += loss * num_inst
train_err_arc += loss_arc * num_inst
train_err_type += loss_type * num_inst
train_total += num_inst
time_ave = (time.time() - start_time) / batch
time_left = (num_batches - batch) * time_ave
# update log
if batch % 10 == 0:
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
log_info = 'train: %d/%d loss: %.4f, arc: %.4f, type: %.4f, time left: %.2fs' % (batch, num_batches, train_err / train_total,
train_err_arc / train_total, train_err_type / train_total, time_left)
sys.stdout.write(log_info)
sys.stdout.flush()
num_back = len(log_info)
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
print('train: %d loss: %.4f, arc: %.4f, type: %.4f, time: %.2fs' % (num_batches, train_err / train_total,
train_err_arc / train_total, train_err_type / train_total, time.time() - start_time))
# evaluate performance on dev data
with torch.no_grad():
network.eval()
pred_filename = 'tmp/%spred_dev%d' % (str(uid), epoch)
pred_writer.start(pred_filename)
gold_filename = 'tmp/%sgold_dev%d' % (str(uid), epoch)
gold_writer.start(gold_filename)
dev_ucorr = 0.0
dev_lcorr = 0.0
dev_total = 0
dev_ucomlpete = 0.0
dev_lcomplete = 0.0
dev_ucorr_nopunc = 0.0
dev_lcorr_nopunc = 0.0
dev_total_nopunc = 0
dev_ucomlpete_nopunc = 0.0
dev_lcomplete_nopunc = 0.0
dev_root_corr = 0.0
dev_total_root = 0.0
dev_total_inst = 0.0
for batch in conllx_data.iterate_batch_tensor(data_dev, batch_size):
word, char, pos, heads, types, masks, lengths = batch
heads_pred, types_pred = decode(word, char, pos, mask=masks, length=lengths, leading_symbolic=conllx_data.NUM_SYMBOLIC_TAGS)
word = word.cpu().numpy()
pos = pos.cpu().numpy()
lengths = lengths.cpu().numpy()
heads = heads.cpu().numpy()
types = types.cpu().numpy()
pred_writer.write(word, pos, heads_pred, types_pred, lengths, symbolic_root=True)
gold_writer.write(word, pos, heads, types, lengths, symbolic_root=True)
stats, stats_nopunc, stats_root, num_inst = parser.eval(word, pos, heads_pred, types_pred, heads, types,
word_alphabet, pos_alphabet, lengths, punct_set=punct_set, symbolic_root=True)
ucorr, lcorr, total, ucm, lcm = stats
ucorr_nopunc, lcorr_nopunc, total_nopunc, ucm_nopunc, lcm_nopunc = stats_nopunc
corr_root, total_root = stats_root
dev_ucorr += ucorr
dev_lcorr += lcorr
dev_total += total
dev_ucomlpete += ucm
dev_lcomplete += lcm
dev_ucorr_nopunc += ucorr_nopunc
dev_lcorr_nopunc += lcorr_nopunc
dev_total_nopunc += total_nopunc
dev_ucomlpete_nopunc += ucm_nopunc
dev_lcomplete_nopunc += lcm_nopunc
dev_root_corr += corr_root
dev_total_root += total_root
dev_total_inst += num_inst
pred_writer.close()
gold_writer.close()
print('W. Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%%' % (
dev_ucorr, dev_lcorr, dev_total, dev_ucorr * 100 / dev_total, dev_lcorr * 100 / dev_total,
dev_ucomlpete * 100 / dev_total_inst, dev_lcomplete * 100 / dev_total_inst))
print('Wo Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%%' % (
dev_ucorr_nopunc, dev_lcorr_nopunc, dev_total_nopunc, dev_ucorr_nopunc * 100 / dev_total_nopunc,
dev_lcorr_nopunc * 100 / dev_total_nopunc,
dev_ucomlpete_nopunc * 100 / dev_total_inst, dev_lcomplete_nopunc * 100 / dev_total_inst))
print('Root: corr: %d, total: %d, acc: %.2f%%' %(dev_root_corr, dev_total_root, dev_root_corr * 100 / dev_total_root))
if dev_lcorrect_nopunc < dev_lcorr_nopunc or (dev_lcorrect_nopunc == dev_lcorr_nopunc and dev_ucorrect_nopunc < dev_ucorr_nopunc):
dev_ucorrect_nopunc = dev_ucorr_nopunc
dev_lcorrect_nopunc = dev_lcorr_nopunc
dev_ucomlpete_match_nopunc = dev_ucomlpete_nopunc
dev_lcomplete_match_nopunc = dev_lcomplete_nopunc
dev_ucorrect = dev_ucorr
dev_lcorrect = dev_lcorr
dev_ucomlpete_match = dev_ucomlpete
dev_lcomplete_match = dev_lcomplete
dev_root_correct = dev_root_corr
best_epoch = epoch
patient = 0
# torch.save(network, model_name)
torch.save(network.state_dict(), model_name)
pred_filename = 'tmp/%spred_test%d' % (str(uid), epoch)
pred_writer.start(pred_filename)
gold_filename = 'tmp/%sgold_test%d' % (str(uid), epoch)
gold_writer.start(gold_filename)
test_ucorrect = 0.0
test_lcorrect = 0.0
test_ucomlpete_match = 0.0
test_lcomplete_match = 0.0
test_total = 0
test_ucorrect_nopunc = 0.0
test_lcorrect_nopunc = 0.0
test_ucomlpete_match_nopunc = 0.0
test_lcomplete_match_nopunc = 0.0
test_total_nopunc = 0
test_total_inst = 0
test_root_correct = 0.0
test_total_root = 0
for batch in conllx_data.iterate_batch_tensor(data_test, batch_size):
word, char, pos, heads, types, masks, lengths = batch
heads_pred, types_pred = decode(word, char, pos, mask=masks, length=lengths, leading_symbolic=conllx_data.NUM_SYMBOLIC_TAGS)
word = word.cpu().numpy()
pos = pos.cpu().numpy()
lengths = lengths.cpu().numpy()
heads = heads.cpu().numpy()
types = types.cpu().numpy()
pred_writer.write(word, pos, heads_pred, types_pred, lengths, symbolic_root=True)
gold_writer.write(word, pos, heads, types, lengths, symbolic_root=True)
stats, stats_nopunc, stats_root, num_inst = parser.eval(word, pos, heads_pred, types_pred, heads, types,
word_alphabet, pos_alphabet, lengths, punct_set=punct_set, symbolic_root=True)
ucorr, lcorr, total, ucm, lcm = stats
ucorr_nopunc, lcorr_nopunc, total_nopunc, ucm_nopunc, lcm_nopunc = stats_nopunc
corr_root, total_root = stats_root
test_ucorrect += ucorr
test_lcorrect += lcorr
test_total += total
test_ucomlpete_match += ucm
test_lcomplete_match += lcm
test_ucorrect_nopunc += ucorr_nopunc
test_lcorrect_nopunc += lcorr_nopunc
test_total_nopunc += total_nopunc
test_ucomlpete_match_nopunc += ucm_nopunc
test_lcomplete_match_nopunc += lcm_nopunc
test_root_correct += corr_root
test_total_root += total_root
test_total_inst += num_inst
pred_writer.close()
gold_writer.close()
else:
if dev_ucorr_nopunc * 100 / dev_total_nopunc < dev_ucorrect_nopunc * 100 / dev_total_nopunc - 5 or patient >= schedule:
# network = torch.load(model_name)
network.load_state_dict(torch.load(model_name))
lr = lr * decay_rate
optim = generate_optimizer(opt, lr, network.parameters())
if decoding == 'greedy':
decode = network.decode
elif decoding == 'mst':
decode = network.decode_mst
else:
raise ValueError('Unknown decoding algorithm: %s' % decoding)
patient = 0
decay += 1
if decay % double_schedule_decay == 0:
schedule *= 2
else:
patient += 1
print('----------------------------------------------------------------------------------------------------------------------------')
print('best dev W. Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)' % (
dev_ucorrect, dev_lcorrect, dev_total, dev_ucorrect * 100 / dev_total, dev_lcorrect * 100 / dev_total,
dev_ucomlpete_match * 100 / dev_total_inst, dev_lcomplete_match * 100 / dev_total_inst,
best_epoch))
print('best dev Wo Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)' % (
dev_ucorrect_nopunc, dev_lcorrect_nopunc, dev_total_nopunc,
dev_ucorrect_nopunc * 100 / dev_total_nopunc, dev_lcorrect_nopunc * 100 / dev_total_nopunc,
dev_ucomlpete_match_nopunc * 100 / dev_total_inst, dev_lcomplete_match_nopunc * 100 / dev_total_inst,
best_epoch))
print('best dev Root: corr: %d, total: %d, acc: %.2f%% (epoch: %d)' % (
dev_root_correct, dev_total_root, dev_root_correct * 100 / dev_total_root, best_epoch))
print('----------------------------------------------------------------------------------------------------------------------------')
print('best test W. Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)' % (
test_ucorrect, test_lcorrect, test_total, test_ucorrect * 100 / test_total, test_lcorrect * 100 / test_total,
test_ucomlpete_match * 100 / test_total_inst, test_lcomplete_match * 100 / test_total_inst,
best_epoch))
print('best test Wo Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)' % (
test_ucorrect_nopunc, test_lcorrect_nopunc, test_total_nopunc,
test_ucorrect_nopunc * 100 / test_total_nopunc, test_lcorrect_nopunc * 100 / test_total_nopunc,
test_ucomlpete_match_nopunc * 100 / test_total_inst, test_lcomplete_match_nopunc * 100 / test_total_inst,
best_epoch))
print('best test Root: corr: %d, total: %d, acc: %.2f%% (epoch: %d)' % (
test_root_correct, test_total_root, test_root_correct * 100 / test_total_root, best_epoch))
print('============================================================================================================================')
if decay == max_decay:
break
def main():
args_parser = argparse.ArgumentParser(description='Tuning with graph-based parsing')
args_parser.add_argument('--mode', choices=['RNN', 'LSTM', 'GRU', 'FastLSTM'],
help='architecture of rnn', required=True)
args_parser.add_argument('--num_epochs', type=int, default=200, help='Number of training epochs')
args_parser.add_argument('--batch_size', type=int, default=64, help='Number of sentences in each batch')
args_parser.add_argument('--hidden_size', type=int, default=256, help='Number of hidden units in RNN')
args_parser.add_argument('--arc_space', type=int, default=128, help='Dimension of tag space')
args_parser.add_argument('--type_space', type=int, default=128, help='Dimension of tag space')
args_parser.add_argument('--num_layers', type=int, default=1, help='Number of layers of RNN')
args_parser.add_argument('--num_filters', type=int, default=50, help='Number of filters in CNN')
args_parser.add_argument('--pos', action='store_true', help='use part-of-speech embedding.')
args_parser.add_argument('--pos_dim', type=int, default=50, help='Dimension of POS embeddings')
args_parser.add_argument('--char_dim', type=int, default=50, help='Dimension of Character embeddings')
args_parser.add_argument('--objective', choices=['cross_entropy', 'crf'], default='cross_entropy',
help='objective function of training procedure.')
args_parser.add_argument('--decode', choices=['mst', 'greedy'], help='decoding algorithm', required=True)
args_parser.add_argument('--learning_rate', type=float, default=0.01, help='Learning rate')
args_parser.add_argument('--decay_rate', type=float, default=0.05, help='Decay rate of learning rate')
args_parser.add_argument('--gamma', type=float, default=0.0, help='weight for regularization')
args_parser.add_argument('--p_rnn', nargs=2, type=float, required=True, help='dropout rate for RNN')
args_parser.add_argument('--p_in', type=float, default=0.33, help='dropout rate for input embeddings')
args_parser.add_argument('--p_out', type=float, default=0.33, help='dropout rate for output layer')
args_parser.add_argument('--schedule', type=int, help='schedule for learning rate decay')
args_parser.add_argument('--unk_replace', type=float, default=0.,
help='The rate to replace a singleton word with UNK')
args_parser.add_argument('--punctuation', nargs='+', type=str, help='List of punctuations')
args_parser.add_argument('--word_embedding', choices=['glove', 'senna', 'sskip', 'polyglot'],
help='Embedding for words', required=True)
args_parser.add_argument('--word_path', help='path for word embedding dict')
args_parser.add_argument('--char_embedding', choices=['random', 'polyglot'], help='Embedding for characters',
required=True)
args_parser.add_argument('--char_path', help='path for character embedding dict')
args_parser.add_argument('--train') # "data/POS-penn/wsj/split1/wsj1.train.original"
args_parser.add_argument('--dev') # "data/POS-penn/wsj/split1/wsj1.dev.original"
args_parser.add_argument('--test') # "data/POS-penn/wsj/split1/wsj1.test.original"
args_parser.add_argument('--model_path', help='path for saving model file.', required=True)
args = args_parser.parse_args()
print("*** Model UID: %s ***" % uid)
logger = get_logger("GraphParser")
mode = args.mode
obj = args.objective
decoding = args.decode
train_path = args.train
dev_path = args.dev
test_path = args.test
model_path = args.model_path
num_epochs = args.num_epochs
batch_size = args.batch_size
hidden_size = args.hidden_size
arc_space = args.arc_space
type_space = args.type_space
num_layers = args.num_layers
num_filters = args.num_filters
learning_rate = args.learning_rate
momentum = 0.9
betas = (0.9, 0.9)
decay_rate = args.decay_rate
gamma = args.gamma
schedule = args.schedule
p_rnn = tuple(args.p_rnn)
p_in = args.p_in
p_out = args.p_out
unk_replace = args.unk_replace
punctuation = args.punctuation
word_embedding = args.word_embedding
word_path = args.word_path
char_embedding = args.char_embedding
char_path = args.char_path
use_pos = args.pos
pos_dim = args.pos_dim
word_dict, word_dim = utils.load_embedding_dict(word_embedding, word_path)
char_dict = None
char_dim = args.char_dim
if char_embedding != 'random':
char_dict, char_dim = utils.load_embedding_dict(char_embedding, char_path)
logger.info("Creating Alphabets")
alphabet_path = os.path.join(model_path, 'alphabets/')
word_alphabet, char_alphabet, pos_alphabet, type_alphabet = conllx_data.create_alphabets(alphabet_path, train_path, data_paths=[dev_path, test_path],
max_vocabulary_size=50000, embedd_dict=word_dict)
num_words = word_alphabet.size()
num_chars = char_alphabet.size()
num_pos = pos_alphabet.size()
num_types = type_alphabet.size()
logger.info("Word Alphabet Size: %d" % num_words)
logger.info("Character Alphabet Size: %d" % num_chars)
logger.info("POS Alphabet Size: %d" % num_pos)
logger.info("Type Alphabet Size: %d" % num_types)
logger.info("Reading Data")
use_gpu = torch.cuda.is_available()
data_train = conllx_data.read_data_to_variable(train_path, word_alphabet, char_alphabet, pos_alphabet, type_alphabet, use_gpu=use_gpu, symbolic_root=True)
# data_train = conllx_data.read_data(train_path, word_alphabet, char_alphabet, pos_alphabet, type_alphabet)
# num_data = sum([len(bucket) for bucket in data_train])
num_data = sum(data_train[1])
data_dev = conllx_data.read_data_to_variable(dev_path, word_alphabet, char_alphabet, pos_alphabet, type_alphabet, use_gpu=use_gpu, volatile=True, symbolic_root=True)
data_test = conllx_data.read_data_to_variable(test_path, word_alphabet, char_alphabet, pos_alphabet, type_alphabet, use_gpu=use_gpu, volatile=True, symbolic_root=True)
punct_set = None
if punctuation is not None:
punct_set = set(punctuation)
logger.info("punctuations(%d): %s" % (len(punct_set), ' '.join(punct_set)))
def construct_word_embedding_table():
scale = np.sqrt(3.0 / word_dim)
table = np.empty([word_alphabet.size(), word_dim], dtype=np.float32)
table[conllx_data.UNK_ID, :] = np.random.uniform(-scale, scale, [1, word_dim]).astype(np.float32)
oov = 0
for word, index in word_alphabet.items():
if word in word_dict:
embedding = word_dict[word]
elif word.lower() in word_dict:
embedding = word_dict[word.lower()]
else:
embedding = np.random.uniform(-scale, scale, [1, word_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('word OOV: %d' % oov)
return torch.from_numpy(table)
def construct_char_embedding_table():
if char_dict is None:
return None
scale = np.sqrt(3.0 / char_dim)
table = np.empty([num_chars, char_dim], dtype=np.float32)
table[conllx_data.UNK_ID, :] = np.random.uniform(-scale, scale, [1, char_dim]).astype(np.float32)
oov = 0
for char, index, in char_alphabet.items():
if char in char_dict:
embedding = char_dict[char]
else:
embedding = np.random.uniform(-scale, scale, [1, char_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('character OOV: %d' % oov)
return torch.from_numpy(table)
word_table = construct_word_embedding_table()
char_table = construct_char_embedding_table()
window = 3
if obj == 'cross_entropy':
network = BiRecurrentConvBiAffine(word_dim, num_words,
char_dim, num_chars,
pos_dim, num_pos,
num_filters, window,
mode, hidden_size, num_layers,
num_types, arc_space, type_space,
embedd_word=word_table, embedd_char=char_table,
p_in=p_in, p_out=p_out, p_rnn=p_rnn, biaffine=True, pos=use_pos)
elif obj == 'crf':
raise NotImplementedError
else:
raise RuntimeError('Unknown objective: %s' % obj)
if use_gpu:
network.cuda()
pred_writer = CoNLLXWriter(word_alphabet, char_alphabet, pos_alphabet, type_alphabet)
gold_writer = CoNLLXWriter(word_alphabet, char_alphabet, pos_alphabet, type_alphabet)
adam_epochs = 50
adam_rate = 0.001
if adam_epochs > 0:
lr = adam_rate
opt = 'adam'
optim = Adam(network.parameters(), lr=adam_rate, betas=betas, weight_decay=gamma)
else:
opt = 'sgd'
lr = learning_rate
optim = SGD(network.parameters(), lr=lr, momentum=momentum, weight_decay=gamma, nesterov=True)
logger.info("Embedding dim: word=%d, char=%d, pos=%d (%s)" % (word_dim, char_dim, pos_dim, use_pos))
logger.info("Network: %s, num_layer=%d, hidden=%d, filter=%d, arc_space=%d, type_space=%d" % (
mode, num_layers, hidden_size, num_filters, arc_space, type_space))
logger.info("train: obj: %s, l2: %f, (#data: %d, batch: %d, dropout(in, out, rnn): (%.2f, %.2f, %s), unk replace: %.2f)" % (
obj, gamma, num_data, batch_size, p_in, p_out, p_rnn, unk_replace))
logger.info("decoding algorithm: %s" % decoding)
num_batches = num_data / batch_size + 1
dev_ucorrect = 0.0
dev_lcorrect = 0.0
dev_ucomlpete_match = 0.0
dev_lcomplete_match = 0.0
dev_ucorrect_nopunc = 0.0
dev_lcorrect_nopunc = 0.0
dev_ucomlpete_match_nopunc = 0.0
dev_lcomplete_match_nopunc = 0.0
dev_root_correct = 0.0
best_epoch = 0
test_ucorrect = 0.0
test_lcorrect = 0.0
test_ucomlpete_match = 0.0
test_lcomplete_match = 0.0
test_ucorrect_nopunc = 0.0
test_lcorrect_nopunc = 0.0
test_ucomlpete_match_nopunc = 0.0
test_lcomplete_match_nopunc = 0.0
test_root_correct = 0.0
test_total = 0
test_total_nopunc = 0
test_total_inst = 0
test_total_root = 0
if decoding == 'greedy':
decode = network.decode
elif decoding == 'mst':
decode = network.decode_mst
else:
raise ValueError('Unknown decoding algorithm: %s' % decoding)
for epoch in range(1, num_epochs + 1):
print('Epoch %d (%s, optim: %s, learning rate=%.4f, decay rate=%.4f (schedule=%d)): ' % (
epoch, mode, opt, lr, decay_rate, schedule))
train_err = 0.
train_err_arc = 0.
train_err_type = 0.
train_total = 0.
start_time = time.time()
num_back = 0
network.train()
for batch in range(1, num_batches + 1):
word, char, pos, heads, types, masks, lengths = conllx_data.get_batch_variable(data_train, batch_size,
unk_replace=unk_replace)
optim.zero_grad()
loss_arc, loss_type = network.loss(word, char, pos, heads, types, mask=masks, length=lengths)
loss = loss_arc + loss_type
loss.backward()
optim.step()
num_inst = word.size(0) if obj == 'crf' else masks.data.sum() - word.size(0)
train_err += loss.data[0] * num_inst
train_err_arc += loss_arc.data[0] * num_inst
train_err_type += loss_type.data[0] * num_inst
train_total += num_inst
time_ave = (time.time() - start_time) / batch
time_left = (num_batches - batch) * time_ave
# update log
if batch % 10 == 0:
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
log_info = 'train: %d/%d loss: %.4f, arc: %.4f, type: %.4f, time left (estimated): %.2fs' % (
batch, num_batches, train_err / train_total,
train_err_arc / train_total, train_err_type / train_total, time_left)
sys.stdout.write(log_info)
sys.stdout.flush()
num_back = len(log_info)
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
print('train: %d loss: %.4f, arc: %.4f, type: %.4f, time: %.2fs' % (
num_batches, train_err / train_total, train_err_arc / train_total, train_err_type / train_total,
time.time() - start_time))
# evaluate performance on dev data
network.eval()
pred_filename = 'tmp/%spred_dev%d' % (str(uid), epoch)
pred_writer.start(pred_filename)
gold_filename = 'tmp/%sgold_dev%d' % (str(uid), epoch)
gold_writer.start(gold_filename)
print('[%s] Epoch %d complete' % (time.strftime("%Y-%m-%d %H:%M:%S"), epoch))
dev_ucorr = 0.0
dev_lcorr = 0.0
dev_total = 0
dev_ucomlpete = 0.0
dev_lcomplete = 0.0
dev_ucorr_nopunc = 0.0
dev_lcorr_nopunc = 0.0
dev_total_nopunc = 0
dev_ucomlpete_nopunc = 0.0
dev_lcomplete_nopunc = 0.0
dev_root_corr = 0.0
dev_total_root = 0.0
dev_total_inst = 0.0
for batch in conllx_data.iterate_batch_variable(data_dev, batch_size):
word, char, pos, heads, types, masks, lengths = batch
heads_pred, types_pred = decode(word, char, pos, mask=masks, length=lengths, leading_symbolic=conllx_data.NUM_SYMBOLIC_TAGS)
word = word.data.cpu().numpy()
pos = pos.data.cpu().numpy()
lengths = lengths.cpu().numpy()
heads = heads.data.cpu().numpy()
types = types.data.cpu().numpy()
pred_writer.write(word, pos, heads_pred, types_pred, lengths, symbolic_root=True)
gold_writer.write(word, pos, heads, types, lengths, symbolic_root=True)
stats, stats_nopunc, stats_root, num_inst = parser.eval(word, pos, heads_pred, types_pred, heads, types, word_alphabet, pos_alphabet, lengths, punct_set=punct_set, symbolic_root=True)
ucorr, lcorr, total, ucm, lcm = stats
ucorr_nopunc, lcorr_nopunc, total_nopunc, ucm_nopunc, lcm_nopunc = stats_nopunc
corr_root, total_root = stats_root
dev_ucorr += ucorr
dev_lcorr += lcorr
dev_total += total
dev_ucomlpete += ucm
dev_lcomplete += lcm
dev_ucorr_nopunc += ucorr_nopunc
dev_lcorr_nopunc += lcorr_nopunc
dev_total_nopunc += total_nopunc
dev_ucomlpete_nopunc += ucm_nopunc
dev_lcomplete_nopunc += lcm_nopunc
dev_root_corr += corr_root
dev_total_root += total_root
dev_total_inst += num_inst
pred_writer.close()
gold_writer.close()
print('W. Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%%' % (
dev_ucorr, dev_lcorr, dev_total, dev_ucorr * 100 / dev_total, dev_lcorr * 100 / dev_total,
dev_ucomlpete * 100 / dev_total_inst, dev_lcomplete * 100 / dev_total_inst))
print('Wo Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%%' % (
dev_ucorr_nopunc, dev_lcorr_nopunc, dev_total_nopunc, dev_ucorr_nopunc * 100 / dev_total_nopunc,
dev_lcorr_nopunc * 100 / dev_total_nopunc,
dev_ucomlpete_nopunc * 100 / dev_total_inst, dev_lcomplete_nopunc * 100 / dev_total_inst))
print('Root: corr: %d, total: %d, acc: %.2f%%' %(
dev_root_corr, dev_total_root, dev_root_corr * 100 / dev_total_root))
if dev_ucorrect_nopunc <= dev_ucorr_nopunc:
dev_ucorrect_nopunc = dev_ucorr_nopunc
dev_lcorrect_nopunc = dev_lcorr_nopunc
dev_ucomlpete_match_nopunc = dev_ucomlpete_nopunc
dev_lcomplete_match_nopunc = dev_lcomplete_nopunc
dev_ucorrect = dev_ucorr
dev_lcorrect = dev_lcorr
dev_ucomlpete_match = dev_ucomlpete
dev_lcomplete_match = dev_lcomplete
dev_root_correct = dev_root_corr
best_epoch = epoch
pred_filename = 'tmp/%spred_test%d' % (str(uid), epoch)
pred_writer.start(pred_filename)
gold_filename = 'tmp/%sgold_test%d' % (str(uid), epoch)
gold_writer.start(gold_filename)
test_ucorrect = 0.0
test_lcorrect = 0.0
test_ucomlpete_match = 0.0
test_lcomplete_match = 0.0
test_total = 0
test_ucorrect_nopunc = 0.0
test_lcorrect_nopunc = 0.0
test_ucomlpete_match_nopunc = 0.0
test_lcomplete_match_nopunc = 0.0
test_total_nopunc = 0
test_total_inst = 0
test_root_correct = 0.0
test_total_root = 0
for batch in conllx_data.iterate_batch_variable(data_test, batch_size):
word, char, pos, heads, types, masks, lengths = batch
heads_pred, types_pred = decode(word, char, pos, mask=masks, length=lengths, leading_symbolic=conllx_data.NUM_SYMBOLIC_TAGS)
word = word.data.cpu().numpy()
pos = pos.data.cpu().numpy()
lengths = lengths.cpu().numpy()
heads = heads.data.cpu().numpy()
types = types.data.cpu().numpy()
pred_writer.write(word, pos, heads_pred, types_pred, lengths, symbolic_root=True)
gold_writer.write(word, pos, heads, types, lengths, symbolic_root=True)
stats, stats_nopunc, stats_root, num_inst = parser.eval(word, pos, heads_pred, types_pred, heads, types, word_alphabet, pos_alphabet, lengths, punct_set=punct_set, symbolic_root=True)
ucorr, lcorr, total, ucm, lcm = stats
ucorr_nopunc, lcorr_nopunc, total_nopunc, ucm_nopunc, lcm_nopunc = stats_nopunc
corr_root, total_root = stats_root
test_ucorrect += ucorr
test_lcorrect += lcorr
test_total += total
test_ucomlpete_match += ucm
test_lcomplete_match += lcm
test_ucorrect_nopunc += ucorr_nopunc
test_lcorrect_nopunc += lcorr_nopunc
test_total_nopunc += total_nopunc
test_ucomlpete_match_nopunc += ucm_nopunc
test_lcomplete_match_nopunc += lcm_nopunc
test_root_correct += corr_root
test_total_root += total_root
test_total_inst += num_inst
pred_writer.close()
gold_writer.close()
print('----------------------------------------------------------------------------------------------------------------------------')
print('best dev W. Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)' % (
dev_ucorrect, dev_lcorrect, dev_total, dev_ucorrect * 100 / dev_total, dev_lcorrect * 100 / dev_total,
dev_ucomlpete_match * 100 / dev_total_inst, dev_lcomplete_match * 100 / dev_total_inst,
best_epoch))
print('best dev Wo Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)' % (
dev_ucorrect_nopunc, dev_lcorrect_nopunc, dev_total_nopunc,
dev_ucorrect_nopunc * 100 / dev_total_nopunc, dev_lcorrect_nopunc * 100 / dev_total_nopunc,
dev_ucomlpete_match_nopunc * 100 / dev_total_inst, dev_lcomplete_match_nopunc * 100 / dev_total_inst,
best_epoch))
print('best dev Root: corr: %d, total: %d, acc: %.2f%% (epoch: %d)' % (
dev_root_correct, dev_total_root, dev_root_correct * 100 / dev_total_root, best_epoch))
print('----------------------------------------------------------------------------------------------------------------------------')
print('best test W. Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)' % (
test_ucorrect, test_lcorrect, test_total, test_ucorrect * 100 / test_total, test_lcorrect * 100 / test_total,
test_ucomlpete_match * 100 / test_total_inst, test_lcomplete_match * 100 / test_total_inst,
best_epoch))
print('best test Wo Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)' % (
test_ucorrect_nopunc, test_lcorrect_nopunc, test_total_nopunc,
test_ucorrect_nopunc * 100 / test_total_nopunc, test_lcorrect_nopunc * 100 / test_total_nopunc,
test_ucomlpete_match_nopunc * 100 / test_total_inst, test_lcomplete_match_nopunc * 100 / test_total_inst,
best_epoch))
print('best test Root: corr: %d, total: %d, acc: %.2f%% (epoch: %d)' % (
test_root_correct, test_total_root, test_root_correct * 100 / test_total_root, best_epoch))
print('============================================================================================================================')
if epoch % schedule == 0:
# lr = lr * decay_rate
if epoch < adam_epochs:
opt = 'adam'
lr = adam_rate / (1.0 + epoch * decay_rate)
optim = Adam(network.parameters(), lr=lr, betas=betas, weight_decay=gamma)
else:
opt = 'sgd'
lr = learning_rate / (1.0 + (epoch - adam_epochs) * decay_rate)
optim = SGD(network.parameters(), lr=lr, momentum=momentum, weight_decay=gamma, nesterov=True)
def parse(args):
logger = get_logger("Parsing")
args.cuda = torch.cuda.is_available()
device = torch.device('cuda', 0) if args.cuda else torch.device('cpu')
test_path = args.test
model_path = args.model_path
model_name = os.path.join(model_path, 'model.pt')
punctuation = args.punctuation
print(args)
logger.info("Creating Alphabets")
alphabet_path = os.path.join(model_path, 'alphabets')
assert os.path.exists(alphabet_path)
word_alphabet, char_alphabet, pos_alphabet, type_alphabet = conllx_data.create_alphabets(
alphabet_path, None)
num_words = word_alphabet.size()
num_chars = char_alphabet.size()
num_pos = pos_alphabet.size()
num_types = type_alphabet.size()
logger.info("Word Alphabet Size: %d" % num_words)
logger.info("Character Alphabet Size: %d" % num_chars)
logger.info("POS Alphabet Size: %d" % num_pos)
logger.info("Type Alphabet Size: %d" % num_types)
result_path = os.path.join(model_path, 'tmp')
if not os.path.exists(result_path):
os.makedirs(result_path)
punct_set = None
if punctuation is not None:
punct_set = set(punctuation)
logger.info("punctuations(%d): %s" %
(len(punct_set), ' '.join(punct_set)))
logger.info("loading network...")
hyps = json.load(open(os.path.join(model_path, 'config.json'), 'r'))
model_type = hyps['model']
assert model_type in ['DeepBiAffine', 'NeuroMST', 'StackPtr']
word_dim = hyps['word_dim']
char_dim = hyps['char_dim']
use_pos = hyps['pos']
pos_dim = hyps['pos_dim']
mode = hyps['rnn_mode']
hidden_size = hyps['hidden_size']
arc_space = hyps['arc_space']
type_space = hyps['type_space']
p_in = hyps['p_in']
p_out = hyps['p_out']
p_rnn = hyps['p_rnn']
activation = hyps['activation']
prior_order = None
alg = 'transition' if model_type == 'StackPtr' else 'graph'
if model_type == 'DeepBiAffine':
num_layers = hyps['num_layers']
network = DeepBiAffine(word_dim,
num_words,
char_dim,
num_chars,
pos_dim,
num_pos,
mode,
hidden_size,
num_layers,
num_types,
arc_space,
type_space,
p_in=p_in,
p_out=p_out,
p_rnn=p_rnn,
pos=use_pos,
activation=activation)
elif model_type == 'NeuroMST':
num_layers = hyps['num_layers']
network = NeuroMST(word_dim,
num_words,
char_dim,
num_chars,
pos_dim,
num_pos,
mode,
hidden_size,
num_layers,
num_types,
arc_space,
type_space,
p_in=p_in,
p_out=p_out,
p_rnn=p_rnn,
pos=use_pos,
activation=activation)
elif model_type == 'StackPtr':
encoder_layers = hyps['encoder_layers']
decoder_layers = hyps['decoder_layers']
num_layers = (encoder_layers, decoder_layers)
prior_order = hyps['prior_order']
grandPar = hyps['grandPar']
sibling = hyps['sibling']
network = StackPtrNet(word_dim,
num_words,
char_dim,
num_chars,
pos_dim,
num_pos,
mode,
hidden_size,
encoder_layers,
decoder_layers,
num_types,
arc_space,
type_space,
prior_order=prior_order,
activation=activation,
p_in=p_in,
p_out=p_out,
p_rnn=p_rnn,
pos=use_pos,
grandPar=grandPar,
sibling=sibling)
else:
raise RuntimeError('Unknown model type: %s' % model_type)
network = network.to(device)
network.load_state_dict(torch.load(model_name, map_location=device))
model = "{}-{}".format(model_type, mode)
logger.info("Network: %s, num_layer=%s, hidden=%d, act=%s" %
(model, num_layers, hidden_size, activation))
logger.info("Reading Data")
if alg == 'graph':
data_test = conllx_data.read_data(test_path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
symbolic_root=True)
else:
data_test = conllx_stacked_data.read_data(test_path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
prior_order=prior_order)
beam = args.beam
pred_writer = CoNLLXWriter(word_alphabet, char_alphabet, pos_alphabet,
type_alphabet)
gold_writer = CoNLLXWriter(word_alphabet, char_alphabet, pos_alphabet,
type_alphabet)
pred_filename = os.path.join(result_path, 'pred.txt')
pred_writer.start(pred_filename)
gold_filename = os.path.join(result_path, 'gold.txt')
gold_writer.start(gold_filename)
with torch.no_grad():
print('Parsing...')
start_time = time.time()
eval(alg,
data_test,
network,
pred_writer,
gold_writer,
punct_set,
word_alphabet,
pos_alphabet,
device,
beam,
batch_size=args.test_batch_size)
print('Time: %.2fs' % (time.time() - start_time))
pred_writer.close()
gold_writer.close()
def main():
parser = argparse.ArgumentParser(
description='Tuning with bi-directional RNN-CNN-CRF')
parser.add_argument('--mode',
choices=['RNN', 'LSTM', 'GRU'],
help='architecture of rnn',
required=True)
parser.add_argument('--num_epochs',
type=int,
default=100,
help='Number of training epochs')
parser.add_argument('--batch_size',
type=int,
default=16,
help='Number of sentences in each batch')
parser.add_argument('--hidden_size',
type=int,
default=128,
help='Number of hidden units in RNN')
parser.add_argument('--tag_space',
type=int,
default=0,
help='Dimension of tag space')
parser.add_argument('--num_filters',
type=int,
default=30,
help='Number of filters in CNN')
parser.add_argument('--char_dim',
type=int,
default=30,
help='Dimension of Character embeddings')
parser.add_argument('--trig_dim',
type=int,
default=100,
help='Dimension of Trigger embeddings')
parser.add_argument('--learning_rate',
type=float,
default=0.015,
help='Learning rate')
parser.add_argument('--decay_rate',
type=float,
default=0.1,
help='Decay rate of learning rate')
parser.add_argument('--gamma',
type=float,
default=0.0,
help='weight for regularization')
parser.add_argument('--dropout',
choices=['std', 'variational'],
help='type of dropout',
required=True)
parser.add_argument('--p', type=float, default=0.5, help='dropout rate')
parser.add_argument('--bigram',
action='store_true',
help='bi-gram parameter for CRF')
parser.add_argument('--schedule',
type=int,
help='schedule for learning rate decay')
parser.add_argument('--unk_replace',
type=float,
default=0.,
help='The rate to replace a singleton word with UNK')
parser.add_argument('--embedding',
choices=['glove', 'senna', 'sskip', 'polyglot'],
help='Embedding for words',
required=True)
parser.add_argument('--embedding_dict', help='path for embedding dict')
parser.add_argument(
'--train') # "data/POS-penn/wsj/split1/wsj1.train.original"
parser.add_argument(
'--dev') # "data/POS-penn/wsj/split1/wsj1.dev.original"
parser.add_argument(
'--test') # "data/POS-penn/wsj/split1/wsj1.test.original"
# Arguments for provding where to get transfer learn data
parser.add_argument('--t_train')
parser.add_argument('--t_dev')
parser.add_argument('--t_test')
parser.add_argument(
'--transfer',
type=bool,
default=True,
help='Flag to activate transfer learning'
) # flag to either run the transfer learning module or not
args = parser.parse_args()
logger = get_logger("SRLCRF")
mode = args.mode
train_path = args.train
dev_path = args.dev
test_path = args.test
transfer_train_path = args.t_train
transfer_dev_path = args.t_dev
transfer_test_path = args.t_test
transfer = args.transfer
num_epochs = args.num_epochs
batch_size = args.batch_size
hidden_size = args.hidden_size
num_filters = args.num_filters
learning_rate = args.learning_rate
momentum = 0.9
decay_rate = args.decay_rate
gamma = args.gamma
schedule = args.schedule
p = args.p
unk_replace = args.unk_replace
bigram = args.bigram
embedding = args.embedding
embedding_path = args.embedding_dict
embedd_dict, embedd_dim = utils.load_embedding_dict(
embedding, embedding_path)
###############################################################################################################################
# Load Data from CoNLL task for SRL and the Transfer Data
# Create alphabets from BOTH SLR and Process Bank
###############################################################################################################################
logger.info("Creating Alphabets")
word_alphabet, char_alphabet, pos_alphabet, \
chunk_alphabet, srl_alphabet, transfer_alphabet = srl_data.create_alphabets("data/alphabets/srl_crf/", train_path,
data_paths=[dev_path, test_path],
transfer_train_path = transfer_train_path,
transfer_data_paths=
[transfer_dev_path, transfer_test_path], transfer=transfer,
embedd_dict=embedd_dict,
max_vocabulary_size=55000
)
logger.info("Word Alphabet Size: %d" % word_alphabet.size())
logger.info("Character Alphabet Size: %d" % char_alphabet.size())
logger.info("POS Alphabet Size: %d" % pos_alphabet.size())
logger.info("Chunk Alphabet Size: %d" % chunk_alphabet.size())
logger.info("SRL Alphabet Size: %d" % srl_alphabet.size())
logger.info("Transfer Alphabet Size: %d" % transfer_alphabet.size())
logger.info("Reading Data into Variables")
use_gpu = torch.cuda.is_available()
def main():
# Arguments parser
parser = argparse.ArgumentParser(description='Tuning with DNN Model for NER')
# Model Hyperparameters
parser.add_argument('--mode', choices=['RNN', 'LSTM', 'GRU'], help='architecture of rnn', default='LSTM')
parser.add_argument('--encoder_mode', choices=['cnn', 'lstm'], help='Encoder type for sentence encoding',
default='lstm')
parser.add_argument('--char_method', choices=['cnn', 'lstm'], help='Method to create character-level embeddings',
required=True)
parser.add_argument('--hidden_size', type=int, default=128, help='Number of hidden units in RNN for sentence level')
parser.add_argument('--char_hidden_size', type=int, default=30, help='Output character-level embeddings size')
parser.add_argument('--char_dim', type=int, default=30, help='Dimension of Character embeddings')
parser.add_argument('--tag_space', type=int, default=0, help='Dimension of tag space')
parser.add_argument('--num_layers', type=int, default=1, help='Number of layers of RNN')
parser.add_argument('--dropout', choices=['std', 'gcn'], help='Dropout method',
default='gcn')
parser.add_argument('--p_em', type=float, default=0.33, help='dropout rate for input embeddings')
parser.add_argument('--p_in', type=float, default=0.33, help='dropout rate for input of RNN model')
parser.add_argument('--p_rnn', nargs=3, type=float, required=True, help='dropout rate for RNN')
parser.add_argument('--p_tag', type=float, default=0.33, help='dropout rate for output layer')
parser.add_argument('--bigram', action='store_true', help='bi-gram parameter for CRF')
parser.add_argument('--adj_attn', choices=['cossim', 'flex_cossim', 'flex_cossim2', 'concat', '', 'multihead'],
default='')
# Data loading and storing params
parser.add_argument('--embedding_dict', help='path for embedding dict')
parser.add_argument('--dataset_name', type=str, default='alexa', help='Which dataset to use')
parser.add_argument('--train', type=str, required=True, help='Path of train set')
parser.add_argument('--dev', type=str, required=True, help='Path of dev set')
parser.add_argument('--test', type=str, required=True, help='Path of test set')
parser.add_argument('--results_folder', type=str, default='results', help='The folder to store results')
parser.add_argument('--alphabets_folder', type=str, default='data/alphabets',
help='The folder to store alphabets files')
# Training parameters
parser.add_argument('--cuda', action='store_true', help='whether using GPU')
parser.add_argument('--num_epochs', type=int, default=100, help='Number of training epochs')
parser.add_argument('--batch_size', type=int, default=16, help='Number of sentences in each batch')
parser.add_argument('--learning_rate', type=float, default=0.001, help='Base learning rate')
parser.add_argument('--decay_rate', type=float, default=0.95, help='Decay rate of learning rate')
parser.add_argument('--schedule', type=int, default=3, help='schedule for learning rate decay')
parser.add_argument('--gamma', type=float, default=0.0, help='weight for l2 regularization')
parser.add_argument('--max_norm', type=float, default=1., help='Max norm for gradients')
parser.add_argument('--gpu_id', type=int, nargs='+', required=True, help='which gpu to use for training')
parser.add_argument('--learning_rate_gcn', type=float, default=5e-4, help='Base learning rate')
parser.add_argument('--gcn_warmup', type=int, default=200, help='Base learning rate')
parser.add_argument('--pretrain_lstm', type=float, default=10, help='Base learning rate')
parser.add_argument('--adj_loss_lambda', type=float, default=0.)
parser.add_argument('--lambda1', type=float, default=1.)
parser.add_argument('--lambda2', type=float, default=0.)
parser.add_argument('--seed', type=int, default=None)
# Misc
parser.add_argument('--embedding', choices=['glove', 'senna', 'alexa'], help='Embedding for words', required=True)
parser.add_argument('--restore', action='store_true', help='whether restore from stored parameters')
parser.add_argument('--save_checkpoint', type=str, default='', help='the path to save the model')
parser.add_argument('--o_tag', type=str, default='O', help='The default tag for outside tag')
parser.add_argument('--unk_replace', type=float, default=0., help='The rate to replace a singleton word with UNK')
parser.add_argument('--evaluate_raw_format', action='store_true', help='The tagging format for evaluation')
parser.add_argument('--eval_type', type=str, default="micro_f1",choices=['micro_f1', 'acc'])
parser.add_argument('--show_network', action='store_true', help='whether to display the network structure')
parser.add_argument('--smooth', action='store_true', help='whether to skip all pdb break points')
parser.add_argument('--uid', type=str, default='temp')
parser.add_argument('--misc', type=str, default='')
args = parser.parse_args()
show_var(['args'])
uid = args.uid
results_folder = args.results_folder
dataset_name = args.dataset_name
use_tensorboard = True
save_dset_dir = '{}../dset/{}/graph'.format(results_folder, dataset_name)
result_file_path = '{}/{dataset}_{uid}_result'.format(results_folder, dataset=dataset_name, uid=uid)
save_loss_path = '{}/{dataset}_{uid}_loss'.format(results_folder, dataset=dataset_name, uid=uid)
save_lr_path = '{}/{dataset}_{uid}_lr'.format(results_folder, dataset=dataset_name, uid='temp')
save_tb_path = '{}/tensorboard/'.format(results_folder)
logger = get_logger("NERCRF")
loss_recorder = LossRecorder(uid=uid)
record = TensorboardLossRecord(use_tensorboard, save_tb_path, uid=uid)
# rename the parameters
mode = args.mode
encoder_mode = args.encoder_mode
train_path = args.train
dev_path = args.dev
test_path = args.test
num_epochs = args.num_epochs
batch_size = args.batch_size
hidden_size = args.hidden_size
char_hidden_size = args.char_hidden_size
char_method = args.char_method
learning_rate = args.learning_rate
momentum = 0.9
decay_rate = args.decay_rate
gamma = args.gamma
max_norm = args.max_norm
schedule = args.schedule
dropout = args.dropout
p_em = args.p_em
p_rnn = tuple(args.p_rnn)
p_in = args.p_in
p_tag = args.p_tag
unk_replace = args.unk_replace
bigram = args.bigram
embedding = args.embedding
embedding_path = args.embedding_dict
evaluate_raw_format = args.evaluate_raw_format
o_tag = args.o_tag
restore = args.restore
save_checkpoint = args.save_checkpoint
alphabets_folder = args.alphabets_folder
use_elmo = False
p_em_vec = 0.
graph_model = 'gnn'
coref_edge_filt = ''
learning_rate_gcn = args.learning_rate_gcn
gcn_warmup = args.gcn_warmup
pretrain_lstm = args.pretrain_lstm
adj_loss_lambda = args.adj_loss_lambda
lambda1 = args.lambda1
lambda2 = args.lambda2
if args.smooth:
import pdb
pdb.set_trace = lambda: None
misc = "{}".format(str(args.misc))
score_file = "{}/{dataset}_{uid}_score".format(results_folder, dataset=dataset_name, uid=uid)
for folder in [results_folder, alphabets_folder, save_dset_dir]:
if not os.path.exists(folder):
os.makedirs(folder)
def set_seed(seed):
if not seed:
seed = int(show_time())
print("[Info] seed set to: {}".format(seed))
random.seed(seed)
np.random.seed(seed)
torch.manual_seed(seed)
torch.cuda.manual_seed_all(seed)
torch.backends.cudnn.deterministic = True
set_seed(args.seed)
embedd_dict, embedd_dim = utils.load_embedding_dict(embedding, embedding_path)
logger.info("Creating Alphabets")
word_alphabet, char_alphabet, ner_alphabet = conll03_data.create_alphabets(
"{}/{}/".format(alphabets_folder, dataset_name), train_path, data_paths=[dev_path, test_path],
embedd_dict=embedd_dict, max_vocabulary_size=50000)
logger.info("Word Alphabet Size: %d" % word_alphabet.size())
logger.info("Character Alphabet Size: %d" % char_alphabet.size())
logger.info("NER Alphabet Size: %d" % ner_alphabet.size())
logger.info("Reading Data")
device = torch.device('cuda') if args.cuda else torch.device('cpu')
print(device)
data_train = conll03_data.read_data(train_path, word_alphabet, char_alphabet,
ner_alphabet,
graph_model, batch_size, ori_order=False,
total_batch="{}x".format(num_epochs + 1),
unk_replace=unk_replace, device=device,
save_path=save_dset_dir + '/train', coref_edge_filt=coref_edge_filt
)
# , shuffle=True,
num_data = data_train.data_len
num_labels = ner_alphabet.size()
graph_types = data_train.meta_info['graph_types']
data_dev = conll03_data.read_data(dev_path, word_alphabet, char_alphabet,
ner_alphabet,
graph_model, batch_size, ori_order=True, unk_replace=unk_replace, device=device,
save_path=save_dset_dir + '/dev',
coref_edge_filt=coref_edge_filt)
data_test = conll03_data.read_data(test_path, word_alphabet, char_alphabet,
ner_alphabet,
graph_model, batch_size, ori_order=True, unk_replace=unk_replace, device=device,
save_path=save_dset_dir + '/test',
coref_edge_filt=coref_edge_filt)
writer = CoNLL03Writer(word_alphabet, char_alphabet, ner_alphabet)
def construct_word_embedding_table():
scale = np.sqrt(3.0 / embedd_dim)
table = np.empty([word_alphabet.size(), embedd_dim], dtype=np.float32)
table[conll03_data.UNK_ID, :] = np.random.uniform(-scale, scale, [1, embedd_dim]).astype(np.float32)
oov = 0
for word, index in word_alphabet.items():
if word in embedd_dict:
embedding = embedd_dict[word]
elif word.lower() in embedd_dict:
embedding = embedd_dict[word.lower()]
else:
embedding = np.random.uniform(-scale, scale, [1, embedd_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('oov: %d' % oov)
return torch.from_numpy(table)
word_table = construct_word_embedding_table()
logger.info("constructing network...")
char_dim = args.char_dim
window = 3
num_layers = args.num_layers
tag_space = args.tag_space
initializer = nn.init.xavier_uniform_
p_gcn = [0.5, 0.5]
d_graph = 256
d_out = 256
d_inner_hid = 128
d_k = 32
d_v = 32
n_head = 4
n_gcn_layer = 1
p_rnn2 = [0.0, 0.5, 0.5]
adj_attn = args.adj_attn
mask_singles = True
post_lstm = 1
position_enc_mode = 'none'
adj_memory = False
if dropout == 'gcn':
network = BiRecurrentConvGraphCRF(embedd_dim, word_alphabet.size(), char_dim, char_alphabet.size(),
char_hidden_size, window, mode, encoder_mode, hidden_size, num_layers,
num_labels,
graph_model, n_head, d_graph, d_inner_hid, d_k, d_v, p_gcn, n_gcn_layer,
d_out, post_lstm=post_lstm, mask_singles=mask_singles,
position_enc_mode=position_enc_mode, adj_attn=adj_attn,
adj_loss_lambda=adj_loss_lambda,
tag_space=tag_space, embedd_word=word_table,
use_elmo=use_elmo, p_em_vec=p_em_vec, p_em=p_em, p_in=p_in, p_tag=p_tag,
p_rnn=p_rnn, p_rnn2=p_rnn2,
bigram=bigram, initializer=initializer)
elif dropout == 'std':
network = BiRecurrentConvCRF(embedd_dim, word_alphabet.size(), char_dim, char_alphabet.size(), char_hidden_size,
window, mode, encoder_mode, hidden_size, num_layers, num_labels,
tag_space=tag_space, embedd_word=word_table, use_elmo=use_elmo, p_em_vec=p_em_vec,
p_em=p_em, p_in=p_in, p_tag=p_tag, p_rnn=p_rnn, bigram=bigram,
initializer=initializer)
# whether restore from trained model
if restore:
network.load_state_dict(torch.load(save_checkpoint + '_best.pth')) # load trained model
logger.info("cuda()ing network...")
network = network.to(device)
if dataset_name == 'conll03' and data_dev.data_len > 26:
sample = data_dev.pad_batch(data_dev.dataset[25:26])
else:
sample = data_dev.pad_batch(data_dev.dataset[:1])
plot_att_change(sample, network, record, save_tb_path + 'att/', uid='temp', epoch=0, device=device,
word_alphabet=word_alphabet, show_net=args.show_network,
graph_types=data_train.meta_info['graph_types'])
logger.info("finished cuda()ing network...")
lr = learning_rate
lr_gcn = learning_rate_gcn
optim = Optimizer('sgd', 'adam', network, dropout, lr=learning_rate,
lr_gcn=learning_rate_gcn,
wd=0., wd_gcn=0., momentum=momentum, lr_decay=decay_rate, schedule=schedule,
gcn_warmup=gcn_warmup,
pretrain_lstm=pretrain_lstm)
nn.utils.clip_grad_norm_(network.parameters(), max_norm)
logger.info(
"Network: %s, encoder_mode=%s, num_layer=%d, hidden=%d, char_hidden_size=%d, char_method=%s, tag_space=%d, crf=%s" % \
(mode, encoder_mode, num_layers, hidden_size, char_hidden_size, char_method, tag_space,
'bigram' if bigram else 'unigram'))
logger.info("training: l2: %f, (#training data: %d, batch: %d, unk replace: %.2f)" % (
gamma, num_data, batch_size, unk_replace))
logger.info("dropout(in, out, rnn): (%.2f, %.2f, %s)" % (p_in, p_tag, p_rnn))
num_batches = num_data // batch_size + 1
dev_f1 = 0.0
dev_acc = 0.0
dev_precision = 0.0
dev_recall = 0.0
test_f1 = 0.0
test_acc = 0.0
test_precision = 0.0
test_recall = 0.0
best_epoch = 0
best_test_f1 = 0.0
best_test_acc = 0.0
best_test_precision = 0.0
best_test_recall = 0.0
best_test_epoch = 0.0
loss_recorder.start(save_loss_path, mode='w', misc=misc)
fwrite('', save_lr_path)
fwrite(json.dumps(vars(args)) + '\n', result_file_path)
for epoch in range(1, num_epochs + 1):
show_var(['misc'])
lr_state = 'Epoch %d (uid=%s, lr=%.2E, lr_gcn=%.2E, decay rate=%.4f): ' % (
epoch, uid, Decimal(optim.curr_lr), Decimal(optim.curr_lr_gcn), decay_rate)
print(lr_state)
fwrite(lr_state[:-2] + '\n', save_lr_path, mode='a')
train_err = 0.
train_err2 = 0.
train_total = 0.
start_time = time.time()
num_back = 0
network.train()
for batch_i in range(1, num_batches + 1):
batch_doc = data_train.next()
char, word, posi, labels, feats, adjs, words_en = [batch_doc[i] for i in [
"chars", "word_ids", "posi", "ner_ids", "feat_ids", "adjs", "words_en"]]
sent_word, sent_char, sent_labels, sent_mask, sent_length, _ = network._doc2sent(
word, char, labels)
optim.zero_grad()
adjs_into_model = adjs if adj_memory else adjs.clone()
loss, (ner_loss, adj_loss) = network.loss(None, word, char, adjs_into_model, labels,
graph_types=graph_types, lambda1=lambda1, lambda2=lambda2)
# loss = network.loss(_, sent_word, sent_char, sent_labels, mask=sent_mask)
loss.backward()
optim.step()
with torch.no_grad():
num_inst = sent_mask.size(0)
train_err += ner_loss * num_inst
train_err2 += adj_loss * num_inst
train_total += num_inst
time_ave = (time.time() - start_time) / batch_i
time_left = (num_batches - batch_i) * time_ave
# update log
if batch_i % 20 == 0:
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
log_info = 'train: %d/%d loss1: %.4f, loss2: %.4f, time left (estimated): %.2fs' % (
batch_i, num_batches, train_err / train_total, train_err2 / train_total, time_left)
sys.stdout.write(log_info)
sys.stdout.flush()
num_back = len(log_info)
optim.update(epoch, batch_i, num_batches, network)
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
print('train: %d loss: %.4f, loss2: %.4f, time: %.2fs' % (
num_batches, train_err / train_total, train_err2 / train_total, time.time() - start_time))
# evaluate performance on dev data
with torch.no_grad():
network.eval()
tmp_filename = "{}/{dataset}_{uid}_output_dev".format(results_folder, dataset=dataset_name, uid=uid)
writer.start(tmp_filename)
for batch in data_dev:
char, word, posi, labels, feats, adjs, words_en = [batch[i] for i in [
"chars", "word_ids", "posi", "ner_ids", "feat_ids", "adjs", "words_en"]]
sent_word, sent_char, sent_labels, sent_mask, sent_length, _ = network._doc2sent(
word, char, labels)
preds, _ = network.decode(
None, word, char, adjs.clone(), target=labels, leading_symbolic=conll03_data.NUM_SYMBOLIC_TAGS,
graph_types=graph_types)
# preds, _ = network.decode(_, sent_word, sent_char, target=sent_labels, mask=sent_mask,
# leading_symbolic=conll03_data.NUM_SYMBOLIC_TAGS)
writer.write(sent_word.cpu().numpy(), preds.cpu().numpy(), sent_labels.cpu().numpy(),
sent_length.cpu().numpy())
writer.close()
if args.eval_type == "acc":
acc, precision, recall, f1 =evaluate_tokenacc(tmp_filename)
f1 = acc
else:
acc, precision, recall, f1 = evaluate(tmp_filename, score_file, evaluate_raw_format, o_tag)
print('dev acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%%' % (acc, precision, recall, f1))
# plot loss and attention
record.plot_loss(epoch, train_err / train_total, f1)
plot_att_change(sample, network, record, save_tb_path + 'att/', uid="{}_{:03d}".format(uid, epoch),
epoch=epoch, device=device,
word_alphabet=word_alphabet, show_net=False, graph_types=graph_types)
if dev_f1 < f1:
dev_f1 = f1
dev_acc = acc
dev_precision = precision
dev_recall = recall
best_epoch = epoch
# evaluate on test data when better performance detected
tmp_filename = "{}/{dataset}_{uid}_output_test".format(results_folder, dataset=dataset_name,
uid=uid)
writer.start(tmp_filename)
for batch in data_test:
char, word, posi, labels, feats, adjs, words_en = [batch[i] for i in [
"chars", "word_ids", "posi", "ner_ids", "feat_ids", "adjs", "words_en"]]
sent_word, sent_char, sent_labels, sent_mask, sent_length, _ = network._doc2sent(
word, char, labels)
preds, _ = network.decode(
None, word, char, adjs.clone(), target=labels, leading_symbolic=conll03_data.NUM_SYMBOLIC_TAGS,
graph_types=graph_types)
# preds, _ = network.decode(_, sent_word, sent_char, target=sent_labels, mask=sent_mask,
# leading_symbolic=conll03_data.NUM_SYMBOLIC_TAGS)
writer.write(sent_word.cpu().numpy(), preds.cpu().numpy(), sent_labels.cpu().numpy(),
sent_length.cpu().numpy())
writer.close()
if args.eval_type == "acc":
test_acc, test_precision, test_recall, test_f1 = evaluate_tokenacc(tmp_filename)
test_f1 = test_acc
else:
test_acc, test_precision, test_recall, test_f1 = evaluate(tmp_filename, score_file, evaluate_raw_format, o_tag)
if best_test_f1 < test_f1:
best_test_acc, best_test_precision, best_test_recall, best_test_f1 = test_acc, test_precision, test_recall, test_f1
best_test_epoch = epoch
# save the model parameters
if save_checkpoint:
torch.save(network.state_dict(), save_checkpoint + '_best.pth')
print("best dev acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)" % (
dev_acc, dev_precision, dev_recall, dev_f1, best_epoch))
print("best test acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)" % (
test_acc, test_precision, test_recall, test_f1, best_epoch))
print("overall best test acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)" % (
best_test_acc, best_test_precision, best_test_recall, best_test_f1, best_test_epoch))
# optim.update(epoch, 1, num_batches, network)
loss_recorder.write(epoch, train_err / train_total, train_err2 / train_total,
Decimal(optim.curr_lr), Decimal(optim.curr_lr_gcn), f1, best_test_f1, test_f1)
with open(result_file_path, 'a') as ofile:
ofile.write("best dev acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)\n" % (
dev_acc, dev_precision, dev_recall, dev_f1, best_epoch))
ofile.write("best test acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)\n" % (
test_acc, test_precision, test_recall, test_f1, best_epoch))
ofile.write("overall best test acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)\n\n" % (
best_test_acc, best_test_precision, best_test_recall, best_test_f1, best_test_epoch))
record.close()
print('Training finished!')
def main():
args_parser = argparse.ArgumentParser(
description='Tuning with stack pointer parser')
args_parser.add_argument(
'--test') # "data/POS-penn/wsj/split1/wsj1.test.original"
args_parser.add_argument('--model_path',
help='path for saving model file.',
required=True)
args_parser.add_argument('--model_name',
help='name for saving model file.',
required=True)
args_parser.add_argument('--punctuation',
nargs='+',
type=str,
help='List of punctuations')
args_parser.add_argument('--beam',
type=int,
default=1,
help='Beam size for decoding')
args_parser.add_argument('--gpu', action='store_true', help='Using GPU')
args_parser.add_argument(
'--prior_order',
choices=['inside_out', 'left2right', 'deep_first', 'shallow_first'],
help='prior order of children.',
required=True)
args = args_parser.parse_args()
logger = get_logger("Analyzer")
test_path = args.test
model_path = args.model_path
model_name = args.model_name
alphabet_path = os.path.join(model_path, 'alphabets/')
model_name = os.path.join(model_path, model_name)
word_alphabet, char_alphabet, pos_alphabet, \
type_alphabet = conllx_stacked_data.create_alphabets(alphabet_path, None, data_paths=[None, None], max_vocabulary_size=50000, embedd_dict=None)
num_words = word_alphabet.size()
num_chars = char_alphabet.size()
num_pos = pos_alphabet.size()
num_types = type_alphabet.size()
logger.info("Word Alphabet Size: %d" % num_words)
logger.info("Character Alphabet Size: %d" % num_chars)
logger.info("POS Alphabet Size: %d" % num_pos)
logger.info("Type Alphabet Size: %d" % num_types)
use_gpu = args.gpu
prior_order = args.prior_order
beam = args.beam
data_test = conllx_stacked_data.read_stacked_data_to_variable(
test_path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
use_gpu=use_gpu,
volatile=True,
prior_order=prior_order)
logger.info('use gpu: %s, beam: %d' % (use_gpu, beam))
punct_set = None
punctuation = args.punctuation
if punctuation is not None:
punct_set = set(punctuation)
logger.info("punctuations(%d): %s" %
(len(punct_set), ' '.join(punct_set)))
pred_writer = CoNLLXWriter(word_alphabet, char_alphabet, pos_alphabet,
type_alphabet)
gold_writer = CoNLLXWriter(word_alphabet, char_alphabet, pos_alphabet,
type_alphabet)
pred_writer.start('tmp/analyze_pred')
gold_writer.start('tmp/analyze_gold')
network = torch.load(model_name)
if use_gpu:
network.cuda()
else:
network.cpu()
test_ucorrect = 0.0
test_lcorrect = 0.0
test_ucomlpete_match = 0.0
test_lcomplete_match = 0.0
test_total = 0
test_ucorrect_nopunc = 0.0
test_lcorrect_nopunc = 0.0
test_ucomlpete_match_nopunc = 0.0
test_lcomplete_match_nopunc = 0.0
test_total_nopunc = 0
test_total_inst = 0
test_root_correct = 0.0
test_total_root = 0
test_ucorrect_stack_leaf = 0.0
test_ucorrect_stack_non_leaf = 0.0
test_lcorrect_stack_leaf = 0.0
test_lcorrect_stack_non_leaf = 0.0
test_leaf = 0
test_non_leaf = 0
sent = 0
network.eval()
start_time = time.time()
for batch in conllx_stacked_data.iterate_batch_stacked_variable(
data_test, 1):
sys.stdout.write('%d, ' % sent)
sys.stdout.flush()
sent += 1
input_encoder, input_decoder = batch
word, char, pos, heads, types, masks, lengths = input_encoder
stacked_heads, children, stacked_types, skip_connect, mask_d, lengths_d = input_decoder
heads_pred, types_pred, children_pred, stacked_types_pred = network.decode(
word,
char,
pos,
mask=masks,
length=lengths,
beam=beam,
leading_symbolic=conllx_stacked_data.NUM_SYMBOLIC_TAGS)
stacked_heads = stacked_heads.data
children = children.data
stacked_types = stacked_types.data
children_pred = torch.from_numpy(children_pred).long()
stacked_types_pred = torch.from_numpy(stacked_types_pred).long()
if use_gpu:
children_pred = children_pred.cuda()
stacked_types_pred = stacked_types_pred.cuda()
mask_d = mask_d.data
mask_leaf = torch.eq(children, stacked_heads).float()
mask_non_leaf = (1.0 - mask_leaf)
mask_leaf = mask_leaf * mask_d
mask_non_leaf = mask_non_leaf * mask_d
num_leaf = mask_leaf.sum()
num_non_leaf = mask_non_leaf.sum()
ucorr_stack = torch.eq(children_pred, children).float()
lcorr_stack = ucorr_stack * torch.eq(stacked_types_pred,
stacked_types).float()
ucorr_stack_leaf = (ucorr_stack * mask_leaf).sum()
ucorr_stack_non_leaf = (ucorr_stack * mask_non_leaf).sum()
lcorr_stack_leaf = (lcorr_stack * mask_leaf).sum()
lcorr_stack_non_leaf = (lcorr_stack * mask_non_leaf).sum()
test_ucorrect_stack_leaf += ucorr_stack_leaf
test_ucorrect_stack_non_leaf += ucorr_stack_non_leaf
test_lcorrect_stack_leaf += lcorr_stack_leaf
test_lcorrect_stack_non_leaf += lcorr_stack_non_leaf
test_leaf += num_leaf
test_non_leaf += num_non_leaf
# ------------------------------------------------------------------------------------------------
word = word.data.cpu().numpy()
pos = pos.data.cpu().numpy()
lengths = lengths.cpu().numpy()
heads = heads.data.cpu().numpy()
types = types.data.cpu().numpy()
pred_writer.write(word,
pos,
heads_pred,
types_pred,
lengths,
symbolic_root=True)
gold_writer.write(word, pos, heads, types, lengths, symbolic_root=True)
stats, stats_nopunc, stats_root, num_inst = parser.eval(
word,
pos,
heads_pred,
types_pred,
heads,
types,
word_alphabet,
pos_alphabet,
lengths,
punct_set=punct_set,
symbolic_root=True)
ucorr, lcorr, total, ucm, lcm = stats
ucorr_nopunc, lcorr_nopunc, total_nopunc, ucm_nopunc, lcm_nopunc = stats_nopunc
corr_root, total_root = stats_root
test_ucorrect += ucorr
test_lcorrect += lcorr
test_total += total
test_ucomlpete_match += ucm
test_lcomplete_match += lcm
test_ucorrect_nopunc += ucorr_nopunc
test_lcorrect_nopunc += lcorr_nopunc
test_total_nopunc += total_nopunc
test_ucomlpete_match_nopunc += ucm_nopunc
test_lcomplete_match_nopunc += lcm_nopunc
test_root_correct += corr_root
test_total_root += total_root
test_total_inst += num_inst
pred_writer.close()
gold_writer.close()
print('\ntime: %.2fs' % (time.time() - start_time))
print(
'test W. Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%%'
%
(test_ucorrect, test_lcorrect, test_total, test_ucorrect * 100 /
test_total, test_lcorrect * 100 / test_total, test_ucomlpete_match *
100 / test_total_inst, test_lcomplete_match * 100 / test_total_inst))
print(
'test Wo Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%%'
%
(test_ucorrect_nopunc, test_lcorrect_nopunc, test_total_nopunc,
test_ucorrect_nopunc * 100 / test_total_nopunc, test_lcorrect_nopunc *
100 / test_total_nopunc, test_ucomlpete_match_nopunc * 100 /
test_total_inst, test_lcomplete_match_nopunc * 100 / test_total_inst))
print('test Root: corr: %d, total: %d, acc: %.2f%%' %
(test_root_correct, test_total_root,
test_root_correct * 100 / test_total_root))
print(
'============================================================================================================================'
)
print(
'Stack leaf: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%'
% (test_ucorrect_stack_leaf, test_lcorrect_stack_leaf, test_leaf,
test_ucorrect_stack_leaf * 100 / test_leaf,
test_lcorrect_stack_leaf * 100 / test_leaf))
print(
'Stack non_leaf: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%'
% (test_ucorrect_stack_non_leaf, test_lcorrect_stack_non_leaf,
test_non_leaf, test_ucorrect_stack_non_leaf * 100 / test_non_leaf,
test_lcorrect_stack_non_leaf * 100 / test_non_leaf))
print(
'============================================================================================================================'
)
def main():
# Arguments parser
parser = argparse.ArgumentParser(
description='Tuning with DNN Model for NER')
# Model Hyperparameters
parser.add_argument('--mode',
choices=['RNN', 'LSTM', 'GRU'],
help='architecture of rnn',
default='LSTM')
parser.add_argument('--encoder_mode',
choices=['cnn', 'lstm'],
help='Encoder type for sentence encoding',
default='lstm')
parser.add_argument('--char_method',
choices=['cnn', 'lstm'],
help='Method to create character-level embeddings',
required=True)
parser.add_argument(
'--hidden_size',
type=int,
default=128,
help='Number of hidden units in RNN for sentence level')
parser.add_argument('--char_hidden_size',
type=int,
default=30,
help='Output character-level embeddings size')
parser.add_argument('--char_dim',
type=int,
default=30,
help='Dimension of Character embeddings')
parser.add_argument('--tag_space',
type=int,
default=0,
help='Dimension of tag space')
parser.add_argument('--num_layers',
type=int,
default=1,
help='Number of layers of RNN')
parser.add_argument('--dropout',
choices=['std', 'weight_drop'],
help='Dropout method',
default='weight_drop')
parser.add_argument('--p_em',
type=float,
default=0.33,
help='dropout rate for input embeddings')
parser.add_argument('--p_in',
type=float,
default=0.33,
help='dropout rate for input of RNN model')
parser.add_argument('--p_rnn',
nargs=2,
type=float,
required=True,
help='dropout rate for RNN')
parser.add_argument('--p_out',
type=float,
default=0.33,
help='dropout rate for output layer')
parser.add_argument('--bigram',
action='store_true',
help='bi-gram parameter for CRF')
# Data loading and storing params
parser.add_argument('--embedding_dict', help='path for embedding dict')
parser.add_argument('--dataset_name',
type=str,
default='alexa',
help='Which dataset to use')
parser.add_argument('--train',
type=str,
required=True,
help='Path of train set')
parser.add_argument('--dev',
type=str,
required=True,
help='Path of dev set')
parser.add_argument('--test',
type=str,
required=True,
help='Path of test set')
parser.add_argument('--results_folder',
type=str,
default='results',
help='The folder to store results')
parser.add_argument('--tmp_folder',
type=str,
default='tmp',
help='The folder to store tmp files')
parser.add_argument('--alphabets_folder',
type=str,
default='data/alphabets',
help='The folder to store alphabets files')
parser.add_argument('--result_file_name',
type=str,
default='hyperparameters_tuning',
help='File name to store some results')
parser.add_argument('--result_file_path',
type=str,
default='results/hyperparameters_tuning',
help='File name to store some results')
# Training parameters
parser.add_argument('--cuda',
action='store_true',
help='whether using GPU')
parser.add_argument('--num_epochs',
type=int,
default=100,
help='Number of training epochs')
parser.add_argument('--batch_size',
type=int,
default=16,
help='Number of sentences in each batch')
parser.add_argument('--learning_rate',
type=float,
default=0.001,
help='Base learning rate')
parser.add_argument('--decay_rate',
type=float,
default=0.95,
help='Decay rate of learning rate')
parser.add_argument('--schedule',
type=int,
default=3,
help='schedule for learning rate decay')
parser.add_argument('--gamma',
type=float,
default=0.0,
help='weight for l2 regularization')
parser.add_argument('--max_norm',
type=float,
default=1.,
help='Max norm for gradients')
parser.add_argument('--gpu_id',
type=int,
nargs='+',
required=True,
help='which gpu to use for training')
# Misc
parser.add_argument('--embedding',
choices=['glove', 'senna', 'alexa'],
help='Embedding for words',
required=True)
parser.add_argument('--restore',
action='store_true',
help='whether restore from stored parameters')
parser.add_argument('--save_checkpoint',
type=str,
default='',
help='the path to save the model')
parser.add_argument('--o_tag',
type=str,
default='O',
help='The default tag for outside tag')
parser.add_argument('--unk_replace',
type=float,
default=0.,
help='The rate to replace a singleton word with UNK')
parser.add_argument('--evaluate_raw_format',
action='store_true',
help='The tagging format for evaluation')
args = parser.parse_args()
logger = get_logger("NERCRF")
# rename the parameters
mode = args.mode
encoder_mode = args.encoder_mode
train_path = args.train
dev_path = args.dev
test_path = args.test
num_epochs = args.num_epochs
batch_size = args.batch_size
hidden_size = args.hidden_size
char_hidden_size = args.char_hidden_size
char_method = args.char_method
learning_rate = args.learning_rate
momentum = 0.9
decay_rate = args.decay_rate
gamma = args.gamma
max_norm = args.max_norm
schedule = args.schedule
dropout = args.dropout
p_em = args.p_em
p_rnn = tuple(args.p_rnn)
p_in = args.p_in
p_out = args.p_out
unk_replace = args.unk_replace
bigram = args.bigram
embedding = args.embedding
embedding_path = args.embedding_dict
dataset_name = args.dataset_name
result_file_name = args.result_file_name
evaluate_raw_format = args.evaluate_raw_format
o_tag = args.o_tag
restore = args.restore
save_checkpoint = args.save_checkpoint
gpu_id = args.gpu_id
results_folder = args.results_folder
tmp_folder = args.tmp_folder
alphabets_folder = args.alphabets_folder
use_elmo = False
p_em_vec = 0.
result_file_path = args.result_file_path
score_file = "%s/score_gpu_%s" % (tmp_folder, '-'.join(map(str, gpu_id)))
if not os.path.exists(results_folder):
os.makedirs(results_folder)
if not os.path.exists(tmp_folder):
os.makedirs(tmp_folder)
if not os.path.exists(alphabets_folder):
os.makedirs(alphabets_folder)
embedd_dict, embedd_dim = utils.load_embedding_dict(
embedding, embedding_path)
logger.info("Creating Alphabets")
word_alphabet, char_alphabet, ner_alphabet = conll03_data.create_alphabets(
"{}/{}/".format(alphabets_folder, dataset_name),
train_path,
data_paths=[dev_path, test_path],
embedd_dict=embedd_dict,
max_vocabulary_size=50000)
logger.info("Word Alphabet Size: %d" % word_alphabet.size())
logger.info("Character Alphabet Size: %d" % char_alphabet.size())
logger.info("NER Alphabet Size: %d" % ner_alphabet.size())
logger.info("Reading Data")
device = torch.device('cuda') if args.cuda else torch.device('cpu')
print(device)
data_train = conll03_data.read_data_to_tensor(train_path,
word_alphabet,
char_alphabet,
ner_alphabet,
device=device)
num_data = sum(data_train[1])
num_labels = ner_alphabet.size()
data_dev = conll03_data.read_data_to_tensor(dev_path,
word_alphabet,
char_alphabet,
ner_alphabet,
device=device)
data_test = conll03_data.read_data_to_tensor(test_path,
word_alphabet,
char_alphabet,
ner_alphabet,
device=device)
writer = CoNLL03Writer(word_alphabet, char_alphabet, ner_alphabet)
def construct_word_embedding_table():
scale = np.sqrt(3.0 / embedd_dim)
table = np.empty([word_alphabet.size(), embedd_dim], dtype=np.float32)
table[conll03_data.UNK_ID, :] = np.random.uniform(
-scale, scale, [1, embedd_dim]).astype(np.float32)
oov = 0
for word, index in word_alphabet.items():
if word in embedd_dict:
embedding = embedd_dict[word]
elif word.lower() in embedd_dict:
embedding = embedd_dict[word.lower()]
else:
embedding = np.random.uniform(
-scale, scale, [1, embedd_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('oov: %d' % oov)
return torch.from_numpy(table)
word_table = construct_word_embedding_table()
logger.info("constructing network...")
char_dim = args.char_dim
window = 3
num_layers = args.num_layers
tag_space = args.tag_space
initializer = nn.init.xavier_uniform_
if args.dropout == 'std':
network = BiRecurrentConvCRF(embedd_dim,
word_alphabet.size(),
char_dim,
char_alphabet.size(),
char_hidden_size,
window,
mode,
encoder_mode,
hidden_size,
num_layers,
num_labels,
tag_space=tag_space,
embedd_word=word_table,
use_elmo=use_elmo,
p_em_vec=p_em_vec,
p_em=p_em,
p_in=p_in,
p_out=p_out,
p_rnn=p_rnn,
bigram=bigram,
initializer=initializer)
elif args.dropout == 'var':
network = BiVarRecurrentConvCRF(embedd_dim,
word_alphabet.size(),
char_dim,
char_alphabet.size(),
char_hidden_size,
window,
mode,
encoder_mode,
hidden_size,
num_layers,
num_labels,
tag_space=tag_space,
embedd_word=word_table,
use_elmo=use_elmo,
p_em_vec=p_em_vec,
p_em=p_em,
p_in=p_in,
p_out=p_out,
p_rnn=p_rnn,
bigram=bigram,
initializer=initializer)
else:
network = BiWeightDropRecurrentConvCRF(embedd_dim,
word_alphabet.size(),
char_dim,
char_alphabet.size(),
char_hidden_size,
window,
mode,
encoder_mode,
hidden_size,
num_layers,
num_labels,
tag_space=tag_space,
embedd_word=word_table,
p_em=p_em,
p_in=p_in,
p_out=p_out,
p_rnn=p_rnn,
bigram=bigram,
initializer=initializer)
network = network.to(device)
lr = learning_rate
optim = SGD(network.parameters(),
lr=lr,
momentum=momentum,
weight_decay=gamma,
nesterov=True)
# optim = Adam(network.parameters(), lr=lr, weight_decay=gamma, amsgrad=True)
nn.utils.clip_grad_norm_(network.parameters(), max_norm)
logger.info("Network: %s, encoder_mode=%s, num_layer=%d, hidden=%d, char_hidden_size=%d, char_method=%s, tag_space=%d, crf=%s" % \
(mode, encoder_mode, num_layers, hidden_size, char_hidden_size, char_method, tag_space, 'bigram' if bigram else 'unigram'))
logger.info(
"training: l2: %f, (#training data: %d, batch: %d, unk replace: %.2f)"
% (gamma, num_data, batch_size, unk_replace))
logger.info("dropout(in, out, rnn): (%.2f, %.2f, %s)" %
(p_in, p_out, p_rnn))
num_batches = num_data // batch_size + 1
dev_f1 = 0.0
dev_acc = 0.0
dev_precision = 0.0
dev_recall = 0.0
test_f1 = 0.0
test_acc = 0.0
test_precision = 0.0
test_recall = 0.0
best_epoch = 0
best_test_f1 = 0.0
best_test_acc = 0.0
best_test_precision = 0.0
best_test_recall = 0.0
best_test_epoch = 0.0
for epoch in range(1, num_epochs + 1):
print(
'Epoch %d (%s(%s), learning rate=%.4f, decay rate=%.4f (schedule=%d)): '
% (epoch, mode, args.dropout, lr, decay_rate, schedule))
train_err = 0.
train_total = 0.
start_time = time.time()
num_back = 0
network.train()
for batch in range(1, num_batches + 1):
_, word, char, labels, masks, lengths = conll03_data.get_batch_tensor(
data_train, batch_size, unk_replace=unk_replace)
optim.zero_grad()
loss = network.loss(_, word, char, labels, mask=masks)
loss.backward()
optim.step()
with torch.no_grad():
num_inst = word.size(0)
train_err += loss * num_inst
train_total += num_inst
time_ave = (time.time() - start_time) / batch
time_left = (num_batches - batch) * time_ave
# update log
if batch % 20 == 0:
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
log_info = 'train: %d/%d loss: %.4f, time left (estimated): %.2fs' % (
batch, num_batches, train_err / train_total, time_left)
sys.stdout.write(log_info)
sys.stdout.flush()
num_back = len(log_info)
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
print('train: %d loss: %.4f, time: %.2fs' %
(num_batches, train_err / train_total, time.time() - start_time))
# evaluate performance on dev data
with torch.no_grad():
network.eval()
tmp_filename = '%s/gpu_%s_dev' % (tmp_folder, '-'.join(
map(str, gpu_id)))
writer.start(tmp_filename)
for batch in conll03_data.iterate_batch_tensor(
data_dev, batch_size):
_, word, char, labels, masks, lengths = batch
preds, _ = network.decode(
_,
word,
char,
target=labels,
mask=masks,
leading_symbolic=conll03_data.NUM_SYMBOLIC_TAGS)
writer.write(word.cpu().numpy(),
preds.cpu().numpy(),
labels.cpu().numpy(),
lengths.cpu().numpy())
writer.close()
acc, precision, recall, f1 = evaluate(tmp_filename, score_file,
evaluate_raw_format, o_tag)
print(
'dev acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%%'
% (acc, precision, recall, f1))
if dev_f1 < f1:
dev_f1 = f1
dev_acc = acc
dev_precision = precision
dev_recall = recall
best_epoch = epoch
# evaluate on test data when better performance detected
tmp_filename = '%s/gpu_%s_test' % (tmp_folder, '-'.join(
map(str, gpu_id)))
writer.start(tmp_filename)
for batch in conll03_data.iterate_batch_tensor(
data_test, batch_size):
_, word, char, labels, masks, lengths = batch
preds, _ = network.decode(
_,
word,
char,
target=labels,
mask=masks,
leading_symbolic=conll03_data.NUM_SYMBOLIC_TAGS)
writer.write(word.cpu().numpy(),
preds.cpu().numpy(),
labels.cpu().numpy(),
lengths.cpu().numpy())
writer.close()
test_acc, test_precision, test_recall, test_f1 = evaluate(
tmp_filename, score_file, evaluate_raw_format, o_tag)
if best_test_f1 < test_f1:
best_test_acc, best_test_precision, best_test_recall, best_test_f1 = test_acc, test_precision, test_recall, test_f1
best_test_epoch = epoch
print(
"best dev acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)"
% (dev_acc, dev_precision, dev_recall, dev_f1, best_epoch))
print(
"best test acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)"
% (test_acc, test_precision, test_recall, test_f1, best_epoch))
print(
"overall best test acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)"
% (best_test_acc, best_test_precision, best_test_recall,
best_test_f1, best_test_epoch))
if epoch % schedule == 0:
lr = learning_rate / (1.0 + epoch * decay_rate)
optim = SGD(network.parameters(),
lr=lr,
momentum=momentum,
weight_decay=gamma,
nesterov=True)
with open(result_file_path, 'a') as ofile:
ofile.write(
"best dev acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)\n"
% (dev_acc, dev_precision, dev_recall, dev_f1, best_epoch))
ofile.write(
"best test acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)\n"
% (test_acc, test_precision, test_recall, test_f1, best_epoch))
ofile.write(
"overall best test acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)\n\n"
% (best_test_acc, best_test_precision, best_test_recall,
best_test_f1, best_test_epoch))
print('Training finished!')
def main():
parser = argparse.ArgumentParser(
description='Tuning with bi-directional RNN-CNN-CRF')
parser.add_argument('--mode',
choices=['RNN', 'LSTM', 'GRU'],
help='architecture of rnn',
required=True)
parser.add_argument('--num_epochs',
type=int,
default=100,
help='Number of training epochs')
parser.add_argument('--batch_size',
type=int,
default=16,
help='Number of sentences in each batch')
parser.add_argument('--hidden_size',
type=int,
default=128,
help='Number of hidden units in RNN')
parser.add_argument('--tag_space',
type=int,
default=0,
help='Dimension of tag space')
parser.add_argument('--num_layers',
type=int,
default=1,
help='Number of layers of RNN')
parser.add_argument('--num_filters',
type=int,
default=30,
help='Number of filters in CNN')
parser.add_argument('--char_dim',
type=int,
default=30,
help='Dimension of Character embeddings')
parser.add_argument('--learning_rate',
type=float,
default=0.015,
help='Learning rate')
parser.add_argument('--decay_rate',
type=float,
default=0.1,
help='Decay rate of learning rate')
parser.add_argument('--gamma',
type=float,
default=0.0,
help='weight for regularization')
parser.add_argument('--dropout',
choices=['std', 'variational'],
help='type of dropout',
required=True)
parser.add_argument('--p_rnn',
nargs=2,
type=float,
required=True,
help='dropout rate for RNN')
parser.add_argument('--p_in',
type=float,
default=0.33,
help='dropout rate for input embeddings')
parser.add_argument('--p_out',
type=float,
default=0.33,
help='dropout rate for output layer')
parser.add_argument('--bigram',
action='store_true',
help='bi-gram parameter for CRF')
parser.add_argument('--schedule',
type=int,
help='schedule for learning rate decay')
parser.add_argument('--unk_replace',
type=float,
default=0.,
help='The rate to replace a singleton word with UNK')
parser.add_argument('--embedding',
choices=['glove', 'senna', 'sskip', 'polyglot'],
help='Embedding for words',
required=True)
parser.add_argument('--embedding_dict', help='path for embedding dict')
parser.add_argument(
'--train') # "data/POS-penn/wsj/split1/wsj1.train.original"
parser.add_argument(
'--dev') # "data/POS-penn/wsj/split1/wsj1.dev.original"
parser.add_argument(
'--test') # "data/POS-penn/wsj/split1/wsj1.test.original"
args = parser.parse_args()
logger = get_logger("NERCRF")
mode = args.mode
train_path = args.train
dev_path = args.dev
test_path = args.test
num_epochs = args.num_epochs
batch_size = args.batch_size
hidden_size = args.hidden_size
num_filters = args.num_filters
learning_rate = args.learning_rate
momentum = 0.9
decay_rate = args.decay_rate
gamma = args.gamma
schedule = args.schedule
p_rnn = tuple(args.p_rnn)
p_in = args.p_in
p_out = args.p_out
unk_replace = args.unk_replace
bigram = args.bigram
embedding = args.embedding
embedding_path = args.embedding_dict
embedd_dict, embedd_dim = utils.load_embedding_dict(
embedding, embedding_path)
logger.info("Creating Alphabets")
word_alphabet, char_alphabet, pos_alphabet, \
chunk_alphabet, ner_alphabet = conll03_data.create_alphabets("data/alphabets/ner_crf/", train_path, data_paths=[dev_path, test_path],
embedd_dict=embedd_dict, max_vocabulary_size=50000)
logger.info("Word Alphabet Size: %d" % word_alphabet.size())
logger.info("Character Alphabet Size: %d" % char_alphabet.size())
logger.info("POS Alphabet Size: %d" % pos_alphabet.size())
logger.info("Chunk Alphabet Size: %d" % chunk_alphabet.size())
logger.info("NER Alphabet Size: %d" % ner_alphabet.size())
logger.info("Reading Data")
use_gpu = torch.cuda.is_available()
data_train = conll03_data.read_data_to_variable(train_path,
word_alphabet,
char_alphabet,
pos_alphabet,
chunk_alphabet,
ner_alphabet,
use_gpu=use_gpu)
num_data = sum(data_train[1])
num_labels = ner_alphabet.size()
data_dev = conll03_data.read_data_to_variable(dev_path,
word_alphabet,
char_alphabet,
pos_alphabet,
chunk_alphabet,
ner_alphabet,
use_gpu=use_gpu,
volatile=True)
data_test = conll03_data.read_data_to_variable(test_path,
word_alphabet,
char_alphabet,
pos_alphabet,
chunk_alphabet,
ner_alphabet,
use_gpu=use_gpu,
volatile=True)
writer = CoNLL03Writer(word_alphabet, char_alphabet, pos_alphabet,
chunk_alphabet, ner_alphabet)
def construct_word_embedding_table():
scale = np.sqrt(3.0 / embedd_dim)
table = np.empty([word_alphabet.size(), embedd_dim], dtype=np.float32)
table[conll03_data.UNK_ID, :] = np.random.uniform(
-scale, scale, [1, embedd_dim]).astype(np.float32)
oov = 0
for word, index in word_alphabet.items():
if word in embedd_dict:
embedding = embedd_dict[word]
elif word.lower() in embedd_dict:
embedding = embedd_dict[word.lower()]
else:
embedding = np.random.uniform(
-scale, scale, [1, embedd_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('oov: %d' % oov)
return torch.from_numpy(table)
word_table = construct_word_embedding_table()
logger.info("constructing network...")
char_dim = args.char_dim
window = 3
num_layers = args.num_layers
tag_space = args.tag_space
initializer = nn.init.xavier_uniform
if args.dropout == 'std':
network = BiRecurrentConvCRF(embedd_dim,
word_alphabet.size(),
char_dim,
char_alphabet.size(),
num_filters,
window,
mode,
hidden_size,
num_layers,
num_labels,
tag_space=tag_space,
embedd_word=word_table,
p_in=p_in,
p_out=p_out,
p_rnn=p_rnn,
bigram=bigram,
initializer=initializer)
else:
network = BiVarRecurrentConvCRF(embedd_dim,
word_alphabet.size(),
char_dim,
char_alphabet.size(),
num_filters,
window,
mode,
hidden_size,
num_layers,
num_labels,
tag_space=tag_space,
embedd_word=word_table,
p_in=p_in,
p_out=p_out,
p_rnn=p_rnn,
bigram=bigram,
initializer=initializer)
if use_gpu:
network.cuda()
lr = learning_rate
optim = SGD(network.parameters(),
lr=lr,
momentum=momentum,
weight_decay=gamma,
nesterov=True)
logger.info(
"Network: %s, num_layer=%d, hidden=%d, filter=%d, tag_space=%d, crf=%s"
% (mode, num_layers, hidden_size, num_filters, tag_space,
'bigram' if bigram else 'unigram'))
logger.info(
"training: l2: %f, (#training data: %d, batch: %d, unk replace: %.2f)"
% (gamma, num_data, batch_size, unk_replace))
logger.info("dropout(in, out, rnn): (%.2f, %.2f, %s)" %
(p_in, p_out, p_rnn))
num_batches = num_data / batch_size + 1
dev_f1 = 0.0
dev_acc = 0.0
dev_precision = 0.0
dev_recall = 0.0
test_f1 = 0.0
test_acc = 0.0
test_precision = 0.0
test_recall = 0.0
best_epoch = 0
for epoch in range(1, num_epochs + 1):
print(
'Epoch %d (%s(%s), learning rate=%.4f, decay rate=%.4f (schedule=%d)): '
% (epoch, mode, args.dropout, lr, decay_rate, schedule))
train_err = 0.
train_total = 0.
start_time = time.time()
num_back = 0
network.train()
for batch in range(1, num_batches + 1):
word, char, _, _, labels, masks, lengths = conll03_data.get_batch_variable(
data_train, batch_size, unk_replace=unk_replace)
optim.zero_grad()
loss = network.loss(word, char, labels, mask=masks)
loss.backward()
optim.step()
num_inst = word.size(0)
train_err += loss.data[0] * num_inst
train_total += num_inst
time_ave = (time.time() - start_time) / batch
time_left = (num_batches - batch) * time_ave
# update log
if batch % 100 == 0:
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
log_info = 'train: %d/%d loss: %.4f, time left (estimated): %.2fs' % (
batch, num_batches, train_err / train_total, time_left)
sys.stdout.write(log_info)
sys.stdout.flush()
num_back = len(log_info)
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
print('train: %d loss: %.4f, time: %.2fs' %
(num_batches, train_err / train_total, time.time() - start_time))
# evaluate performance on dev data
network.eval()
tmp_filename = 'tmp/%s_dev%d' % (str(uid), epoch)
writer.start(tmp_filename)
for batch in conll03_data.iterate_batch_variable(data_dev, batch_size):
word, char, pos, chunk, labels, masks, lengths = batch
preds, _ = network.decode(
word,
char,
target=labels,
mask=masks,
leading_symbolic=conll03_data.NUM_SYMBOLIC_TAGS)
writer.write(word.data.cpu().numpy(),
pos.data.cpu().numpy(),
chunk.data.cpu().numpy(),
preds.cpu().numpy(),
labels.data.cpu().numpy(),
lengths.cpu().numpy())
writer.close()
acc, precision, recall, f1 = evaluate(tmp_filename)
print(
'dev acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%%' %
(acc, precision, recall, f1))
if dev_f1 < f1:
dev_f1 = f1
dev_acc = acc
dev_precision = precision
dev_recall = recall
best_epoch = epoch
# evaluate on test data when better performance detected
tmp_filename = 'tmp/%s_test%d' % (str(uid), epoch)
writer.start(tmp_filename)
for batch in conll03_data.iterate_batch_variable(
data_test, batch_size):
word, char, pos, chunk, labels, masks, lengths = batch
preds, _ = network.decode(
word,
char,
target=labels,
mask=masks,
leading_symbolic=conll03_data.NUM_SYMBOLIC_TAGS)
writer.write(word.data.cpu().numpy(),
pos.data.cpu().numpy(),
chunk.data.cpu().numpy(),
preds.cpu().numpy(),
labels.data.cpu().numpy(),
lengths.cpu().numpy())
writer.close()
test_acc, test_precision, test_recall, test_f1 = evaluate(
tmp_filename)
print(
"best dev acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)"
% (dev_acc, dev_precision, dev_recall, dev_f1, best_epoch))
print(
"best test acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d)"
% (test_acc, test_precision, test_recall, test_f1, best_epoch))
if epoch % schedule == 0:
lr = learning_rate / (1.0 + epoch * decay_rate)
optim = SGD(network.parameters(),
lr=lr,
momentum=momentum,
weight_decay=gamma,
nesterov=True)
len(input_mask), max_seq_length)
assert len(
token_type_ids
) == max_seq_length, "Error with token type length {} vs {}".format(
len(token_type_ids), max_seq_length)
features.append(
InputFeatures(input_ids=input_ids,
input_mask=input_mask,
token_type_ids=token_type_ids))
return features
app = Flask(__name__)
logger = get_logger("DP_API")
use_gpu = True
use_elmo_bert = True
@app.route('/nlp/parser', methods=['POST'])
def parser():
try:
params = request.json
if params is None:
return http_sender.send_error_response(
http_response_message.ResponseCode.JSON_SYNTAX_ERROR)
if 'sentence' in params:
query = params['sentence'].strip()
def main():
uid = uuid.uuid4().hex[:6]
args_parser = argparse.ArgumentParser(
description='Tuning with stack pointer parser')
args_parser.add_argument('--mode',
choices=['RNN', 'LSTM', 'GRU', 'FastLSTM'],
help='architecture of rnn',
default='FastLSTM')
args_parser.add_argument('--num_epochs',
type=int,
default=10,
help='Number of training epochs')
args_parser.add_argument('--batch_size',
type=int,
default=32,
help='Number of sentences in each batch')
args_parser.add_argument('--decoder_input_size',
type=int,
default=256,
help='Number of input units in decoder RNN.')
args_parser.add_argument('--hidden_size',
type=int,
default=256,
help='Number of hidden units in RNN')
args_parser.add_argument('--arc_space',
type=int,
default=128,
help='Dimension of tag space')
args_parser.add_argument('--type_space',
type=int,
default=128,
help='Dimension of tag space')
args_parser.add_argument('--encoder_layers',
type=int,
default=1,
help='Number of layers of encoder RNN')
args_parser.add_argument('--decoder_layers',
type=int,
default=1,
help='Number of layers of decoder RNN')
args_parser.add_argument('--char_num_filters',
type=int,
default=50,
help='Number of filters in CNN(Character Level)')
args_parser.add_argument('--eojul_num_filters',
type=int,
default=100,
help='Number of filters in CNN(Eojul Level)')
args_parser.add_argument('--pos',
action='store_true',
help='use part-of-speech embedding.')
args_parser.add_argument('--char',
action='store_true',
help='use character embedding and CNN.')
args_parser.add_argument('--eojul',
action='store_true',
help='use eojul embedding and CNN.')
args_parser.add_argument('--word_dim',
type=int,
default=100,
help='Dimension of Word embeddings')
args_parser.add_argument('--pos_dim',
type=int,
default=50,
help='Dimension of POS embeddings')
args_parser.add_argument('--char_dim',
type=int,
default=50,
help='Dimension of Character embeddings')
args_parser.add_argument('--opt',
choices=['adam', 'sgd', 'adamax'],
help='optimization algorithm',
default='adam')
args_parser.add_argument('--learning_rate',
type=float,
default=0.001,
help='Learning rate')
args_parser.add_argument('--decay_rate',
type=float,
default=0.75,
help='Decay rate of learning rate')
args_parser.add_argument('--max_decay',
type=int,
default=9,
help='Number of decays before stop')
args_parser.add_argument('--double_schedule_decay',
type=int,
default=5,
help='Number of decays to double schedule')
args_parser.add_argument('--clip',
type=float,
default=5.0,
help='gradient clipping')
args_parser.add_argument('--gamma',
type=float,
default=0.0,
help='weight for regularization')
args_parser.add_argument('--epsilon',
type=float,
default=1e-8,
help='epsilon for adam or adamax')
args_parser.add_argument('--coverage',
type=float,
default=0.0,
help='weight for coverage loss')
args_parser.add_argument('--p_rnn',
nargs=2,
type=float,
default=[0.33, 0.33],
help='dropout rate for RNN')
args_parser.add_argument('--p_in',
type=float,
default=0.33,
help='dropout rate for input embeddings')
args_parser.add_argument('--p_out',
type=float,
default=0.33,
help='dropout rate for output layer')
args_parser.add_argument('--label_smooth',
type=float,
default=1.0,
help='weight of label smoothing method')
args_parser.add_argument('--skipConnect',
action='store_true',
help='use skip connection for decoder RNN.')
args_parser.add_argument('--grandPar',
action='store_true',
help='use grand parent.')
args_parser.add_argument('--sibling',
action='store_true',
help='use sibling.')
args_parser.add_argument(
'--prior_order',
choices=['inside_out', 'left2right', 'deep_first', 'shallow_first'],
help='prior order of children.',
required=True)
args_parser.add_argument('--schedule',
type=int,
default=20,
help='schedule for learning rate decay')
args_parser.add_argument(
'--unk_replace',
type=float,
default=0.,
help='The rate to replace a singleton word with UNK')
args_parser.add_argument('--punctuation',
nargs='+',
type=str,
help='List of punctuations')
args_parser.add_argument('--beam',
type=int,
default=1,
help='Beam size for decoding')
args_parser.add_argument(
'--word_embedding',
choices=['random', 'word2vec', 'glove', 'senna', 'sskip', 'polyglot'],
help='Embedding for words',
required=True)
args_parser.add_argument('--word_path',
help='path for word embedding dict')
args_parser.add_argument(
'--freeze',
action='store_true',
help='frozen the word embedding (disable fine-tuning).')
args_parser.add_argument('--char_embedding',
choices=['random', 'word2vec'],
help='Embedding for characters',
required=True)
args_parser.add_argument('--char_path',
help='path for character embedding dict')
args_parser.add_argument('--pos_embedding',
choices=['random', 'word2vec'],
help='Embedding for part of speeches',
required=True)
args_parser.add_argument('--pos_path',
help='path for part of speech embedding dict')
args_parser.add_argument(
'--train') # "data/POS-penn/wsj/split1/wsj1.train.original"
args_parser.add_argument(
'--dev') # "data/POS-penn/wsj/split1/wsj1.dev.original"
args_parser.add_argument(
'--test') # "data/POS-penn/wsj/split1/wsj1.test.original"
args_parser.add_argument('--model_path',
help='path for saving model file.',
required=True)
args_parser.add_argument('--model_name',
help='name for saving model file.',
required=True)
args_parser.add_argument('--use_gpu',
action='store_true',
help='use the gpu')
args = args_parser.parse_args()
logger = get_logger("PtrParser")
mode = args.mode
train_path = args.train
dev_path = args.dev
test_path = args.test
model_path = args.model_path
model_name = "{}_{}".format(str(uid), args.model_name)
num_epochs = args.num_epochs
batch_size = args.batch_size
input_size_decoder = args.decoder_input_size
hidden_size = args.hidden_size
arc_space = args.arc_space
type_space = args.type_space
encoder_layers = args.encoder_layers
decoder_layers = args.decoder_layers
char_num_filters = args.char_num_filters
eojul_num_filters = args.eojul_num_filters
learning_rate = args.learning_rate
opt = args.opt
momentum = 0.9
betas = (0.9, 0.9)
eps = args.epsilon
decay_rate = args.decay_rate
clip = args.clip
gamma = args.gamma
cov = args.coverage
schedule = args.schedule
p_rnn = tuple(args.p_rnn)
p_in = args.p_in
p_out = args.p_out
label_smooth = args.label_smooth
unk_replace = args.unk_replace
prior_order = args.prior_order
skipConnect = args.skipConnect
grandPar = args.grandPar
sibling = args.sibling
use_gpu = args.use_gpu
beam = args.beam
punctuation = args.punctuation
freeze = args.freeze
word_embedding = args.word_embedding
word_path = args.word_path
use_char = args.char
char_embedding = args.char_embedding
char_path = args.char_path
pos_embedding = args.pos_embedding
pos_path = args.pos_path
use_pos = args.pos
if word_embedding != 'random':
word_dict, word_dim = utils.load_embedding_dict(
word_embedding, word_path)
else:
word_dict = {}
word_dim = args.word_dim
if char_embedding != 'random':
char_dict, char_dim = utils.load_embedding_dict(
char_embedding, char_path)
else:
if use_char:
char_dict = {}
char_dim = args.char_dim
else:
char_dict = None
if pos_embedding != 'random':
pos_dict, pos_dim = utils.load_embedding_dict(pos_embedding, pos_path)
else:
if use_pos:
pos_dict = {}
pos_dim = args.pos_dim
else:
pos_dict = None
use_eojul = args.eojul
logger.info("Creating Alphabets")
alphabet_path = os.path.join(model_path, 'alphabets/')
model_name = os.path.join(model_path, model_name)
word_alphabet, char_alphabet, pos_alphabet, type_alphabet = conllx_stacked_data.create_alphabets(
alphabet_path,
train_path,
data_paths=[dev_path, test_path],
max_vocabulary_size=50000,
embedd_dict=word_dict)
num_words = word_alphabet.size()
num_chars = char_alphabet.size()
num_pos = pos_alphabet.size()
num_types = type_alphabet.size()
logger.info("Word Alphabet Size: %d" % num_words)
logger.info("Character Alphabet Size: %d" % num_chars)
logger.info("POS Alphabet Size: %d" % num_pos)
logger.info("Type Alphabet Size: %d" % num_types)
logger.info("Reading Data")
use_gpu = use_gpu
data_train = conllx_stacked_data.read_stacked_data_to_variable(
train_path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
use_gpu=use_gpu,
prior_order=prior_order)
num_data = sum(data_train[1])
data_dev = conllx_stacked_data.read_stacked_data_to_variable(
dev_path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
use_gpu=use_gpu,
prior_order=prior_order)
data_test = conllx_stacked_data.read_stacked_data_to_variable(
test_path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
use_gpu=use_gpu,
prior_order=prior_order)
punct_set = None
if punctuation is not None:
punct_set = set(punctuation)
logger.info("punctuations(%d): %s" %
(len(punct_set), ' '.join(punct_set)))
def construct_word_embedding_table():
scale = np.sqrt(3.0 / word_dim)
table = np.empty([word_alphabet.size(), word_dim], dtype=np.float32)
table[conllx_stacked_data.UNK_ID, :] = np.zeros([1, word_dim]).astype(
np.float32) if freeze else np.random.uniform(
-scale, scale, [1, word_dim]).astype(np.float32)
oov = 0
for word, index in word_alphabet.items():
if word in word_dict:
embedding = word_dict[word]
elif word.lower() in word_dict:
embedding = word_dict[word.lower()]
else:
embedding = np.zeros([1, word_dim]).astype(
np.float32) if freeze else np.random.uniform(
-scale, scale, [1, word_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('word OOV: %d' % oov)
return torch.from_numpy(table)
def construct_char_embedding_table():
if char_dict is None:
return None
scale = np.sqrt(3.0 / char_dim)
table = np.empty([num_chars, char_dim], dtype=np.float32)
table[conllx_stacked_data.UNK_ID, :] = np.random.uniform(
-scale, scale, [1, char_dim]).astype(np.float32)
oov = 0
for char, index in char_alphabet.items():
if char in char_dict:
embedding = char_dict[char]
else:
embedding = np.random.uniform(-scale, scale,
[1, char_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('character OOV: %d' % oov)
return torch.from_numpy(table)
def construct_pos_embedding_table():
if pos_dict is None:
return None
scale = np.sqrt(3.0 / pos_dim)
table = np.empty([num_pos, pos_dim], dtype=np.float32)
table[conllx_stacked_data.UNK_ID, :] = np.random.uniform(
-scale, scale, [1, pos_dim]).astype(np.float32)
oov = 0
for pos, index in pos_alphabet.items():
if pos in pos_dict:
embedding = pos_dict[pos]
else:
embedding = np.random.uniform(-scale, scale,
[1, pos_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('pos OOV: %d' % oov)
return torch.from_numpy(table)
word_table = construct_word_embedding_table()
char_table = construct_char_embedding_table()
pos_table = construct_pos_embedding_table()
char_window = 3
eojul_window = 3
network = StackPtrNet(word_dim,
num_words,
char_dim,
num_chars,
pos_dim,
num_pos,
char_num_filters,
char_window,
eojul_num_filters,
eojul_window,
mode,
input_size_decoder,
hidden_size,
encoder_layers,
decoder_layers,
num_types,
arc_space,
type_space,
embedd_word=word_table,
embedd_char=char_table,
embedd_pos=pos_table,
p_in=p_in,
p_out=p_out,
p_rnn=p_rnn,
biaffine=True,
pos=use_pos,
char=use_char,
eojul=use_eojul,
prior_order=prior_order,
skipConnect=skipConnect,
grandPar=grandPar,
sibling=sibling)
def save_args():
arg_path = model_name + '.arg.json'
arguments = [
word_dim, num_words, char_dim, num_chars, pos_dim, num_pos,
char_num_filters, char_window, eojul_num_filters, eojul_window,
mode, input_size_decoder, hidden_size, encoder_layers,
decoder_layers, num_types, arc_space, type_space
]
kwargs = {
'p_in': p_in,
'p_out': p_out,
'p_rnn': p_rnn,
'biaffine': True,
'pos': use_pos,
'char': use_char,
'eojul': use_eojul,
'prior_order': prior_order,
'skipConnect': skipConnect,
'grandPar': grandPar,
'sibling': sibling
}
json.dump({
'args': arguments,
'kwargs': kwargs
},
open(arg_path, 'w'),
indent=4)
if freeze:
network.word_embedd.freeze()
if use_gpu:
network.cuda()
save_args()
pred_writer = CoNLLXWriter(word_alphabet, char_alphabet, pos_alphabet,
type_alphabet)
gold_writer = CoNLLXWriter(word_alphabet, char_alphabet, pos_alphabet,
type_alphabet)
def generate_optimizer(opt, lr, params):
params = filter(lambda param: param.requires_grad, params)
if opt == 'adam':
return Adam(params,
lr=lr,
betas=betas,
weight_decay=gamma,
eps=eps)
elif opt == 'sgd':
return SGD(params,
lr=lr,
momentum=momentum,
weight_decay=gamma,
nesterov=True)
elif opt == 'adamax':
return Adamax(params,
lr=lr,
betas=betas,
weight_decay=gamma,
eps=eps)
else:
raise ValueError('Unknown optimization algorithm: %s' % opt)
lr = learning_rate
optim = generate_optimizer(opt, lr, network.parameters())
opt_info = 'opt: %s, ' % opt
if opt == 'adam':
opt_info += 'betas=%s, eps=%.1e' % (betas, eps)
elif opt == 'sgd':
opt_info += 'momentum=%.2f' % momentum
elif opt == 'adamax':
opt_info += 'betas=%s, eps=%.1e' % (betas, eps)
word_status = 'frozen' if freeze else 'fine tune'
char_status = 'enabled' if use_char else 'disabled'
pos_status = 'enabled' if use_pos else 'disabled'
logger.info(
"Embedding dim: word=%d (%s), char=%d (%s), pos=%d (%s)" %
(word_dim, word_status, char_dim, char_status, pos_dim, pos_status))
logger.info("Char CNN: filter=%d, kernel=%d" %
(char_num_filters, char_window))
logger.info("Eojul CNN: filter=%d, kernel=%d" %
(eojul_num_filters, eojul_window))
logger.info(
"RNN: %s, num_layer=(%d, %d), input_dec=%d, hidden=%d, arc_space=%d, type_space=%d"
% (mode, encoder_layers, decoder_layers, input_size_decoder,
hidden_size, arc_space, type_space))
logger.info(
"train: cov: %.1f, (#data: %d, batch: %d, clip: %.2f, label_smooth: %.2f, unk_repl: %.2f)"
% (cov, num_data, batch_size, clip, label_smooth, unk_replace))
logger.info("dropout(in, out, rnn): (%.2f, %.2f, %s)" %
(p_in, p_out, p_rnn))
logger.info('prior order: %s, grand parent: %s, sibling: %s, ' %
(prior_order, grandPar, sibling))
logger.info('skip connect: %s, beam: %d, use_gpu: %s' %
(skipConnect, beam, use_gpu))
logger.info(opt_info)
num_batches = num_data // batch_size + 1
dev_ucorrect = 0.0
dev_lcorrect = 0.0
dev_ucomlpete_match = 0.0
dev_lcomplete_match = 0.0
dev_ucorrect_nopunc = 0.0
dev_lcorrect_nopunc = 0.0
dev_ucomlpete_match_nopunc = 0.0
dev_lcomplete_match_nopunc = 0.0
dev_root_correct = 0.0
best_epoch = 0
test_ucorrect = 0.0
test_lcorrect = 0.0
test_ucomlpete_match = 0.0
test_lcomplete_match = 0.0
test_ucorrect_nopunc = 0.0
test_lcorrect_nopunc = 0.0
test_ucomlpete_match_nopunc = 0.0
test_lcomplete_match_nopunc = 0.0
test_root_correct = 0.0
test_total = 0
test_total_nopunc = 0
test_total_inst = 0
test_total_root = 0
patient = 0
decay = 0.
max_decay = args.max_decay
double_schedule_decay = args.double_schedule_decay
for epoch in range(1, num_epochs + 1):
print(
'Epoch %d (%s, optim: %s, learning rate=%.6f, eps=%.1e, decay rate=%.2f (schedule=%d, patient=%d, decay=%d (%d, %d))): '
% (epoch, mode, opt, lr, eps, decay_rate, schedule, patient, decay,
max_decay, double_schedule_decay))
train_err_arc_leaf = 0.
train_err_arc_non_leaf = 0.
train_err_type_leaf = 0.
train_err_type_non_leaf = 0.
train_err_cov = 0.
train_total_leaf = 0.
train_total_non_leaf = 0.
start_time = time.time()
num_back = 0
network.train()
for batch in range(1, num_batches + 1):
input_encoder, input_decoder = conllx_stacked_data.get_batch_stacked_variable(
data_train,
batch_size,
unk_replace=unk_replace,
use_gpu=use_gpu)
word, char, pos, heads, types, masks_e, lengths_e = input_encoder
stacked_heads, children, sibling, stacked_types, skip_connect, masks_d, lengths_d = input_decoder
optim.zero_grad()
loss_arc_leaf, loss_arc_non_leaf, \
loss_type_leaf, loss_type_non_leaf, \
loss_cov, num_leaf, num_non_leaf = network.loss(word, char, pos, heads, stacked_heads, children, sibling, stacked_types, label_smooth,
skip_connect=skip_connect, mask_e=masks_e, length_e=lengths_e, mask_d=masks_d, length_d=lengths_d)
loss_arc = loss_arc_leaf + loss_arc_non_leaf
loss_type = loss_type_leaf + loss_type_non_leaf
loss = loss_arc + loss_type + cov * loss_cov
loss.backward()
clip_grad_norm_(network.parameters(), clip)
optim.step()
num_leaf = num_leaf.item() ##180809 data[0] --> item()
num_non_leaf = num_non_leaf.item() ##180809 data[0] --> item()
train_err_arc_leaf += loss_arc_leaf.item(
) * num_leaf ##180809 data[0] --> item()
train_err_arc_non_leaf += loss_arc_non_leaf.item(
) * num_non_leaf ##180809 data[0] --> item()
train_err_type_leaf += loss_type_leaf.item(
) * num_leaf ##180809 data[0] --> item()
train_err_type_non_leaf += loss_type_non_leaf.item(
) * num_non_leaf ##180809 data[0] --> item()
train_err_cov += loss_cov.item() * (num_leaf + num_non_leaf
) ##180809 data[0] --> item()
train_total_leaf += num_leaf
train_total_non_leaf += num_non_leaf
time_ave = (time.time() - start_time) / batch
time_left = (num_batches - batch) * time_ave
# update log
if batch % 10 == 0:
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
err_arc_leaf = train_err_arc_leaf / train_total_leaf
err_arc_non_leaf = train_err_arc_non_leaf / train_total_non_leaf
err_arc = err_arc_leaf + err_arc_non_leaf
err_type_leaf = train_err_type_leaf / train_total_leaf
err_type_non_leaf = train_err_type_non_leaf / train_total_non_leaf
err_type = err_type_leaf + err_type_non_leaf
err_cov = train_err_cov / (train_total_leaf +
train_total_non_leaf)
err = err_arc + err_type + cov * err_cov
log_info = 'train: %d/%d loss (leaf, non_leaf): %.4f, arc: %.4f (%.4f, %.4f), type: %.4f (%.4f, %.4f), coverage: %.4f, time left (estimated): %.2fs' % (
batch, num_batches, err, err_arc, err_arc_leaf,
err_arc_non_leaf, err_type, err_type_leaf,
err_type_non_leaf, err_cov, time_left)
sys.stdout.write(log_info)
sys.stdout.flush()
num_back = len(log_info)
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
err_arc_leaf = train_err_arc_leaf / train_total_leaf
err_arc_non_leaf = train_err_arc_non_leaf / train_total_non_leaf
err_arc = err_arc_leaf + err_arc_non_leaf
err_type_leaf = train_err_type_leaf / train_total_leaf
err_type_non_leaf = train_err_type_non_leaf / train_total_non_leaf
err_type = err_type_leaf + err_type_non_leaf
err_cov = train_err_cov / (train_total_leaf + train_total_non_leaf)
err = err_arc + err_type + cov * err_cov
print(
'train: %d loss (leaf, non_leaf): %.4f, arc: %.4f (%.4f, %.4f), type: %.4f (%.4f, %.4f), coverage: %.4f, time: %.2fs'
% (num_batches, err, err_arc, err_arc_leaf, err_arc_non_leaf,
err_type, err_type_leaf, err_type_non_leaf, err_cov,
time.time() - start_time))
#torch.save(network.state_dict(), model_name+"."+str(epoch))
#continue
# evaluate performance on dev data
network.eval()
tmp_root = 'tmp'
if not os.path.isdir(tmp_root):
logger.info('Creating temporary folder(%s)' % (tmp_root, ))
os.makedirs(tmp_root)
pred_filename = '%s/%spred_dev%d' % (tmp_root, str(uid), epoch)
pred_writer.start(pred_filename)
gold_filename = '%s/%sgold_dev%d' % (tmp_root, str(uid), epoch)
gold_writer.start(gold_filename)
dev_ucorr = 0.0
dev_lcorr = 0.0
dev_total = 0
dev_ucomlpete = 0.0
dev_lcomplete = 0.0
dev_ucorr_nopunc = 0.0
dev_lcorr_nopunc = 0.0
dev_total_nopunc = 0
dev_ucomlpete_nopunc = 0.0
dev_lcomplete_nopunc = 0.0
dev_root_corr = 0.0
dev_total_root = 0.0
dev_total_inst = 0.0
for batch in conllx_stacked_data.iterate_batch_stacked_variable(
data_dev, batch_size, use_gpu=use_gpu):
input_encoder, _, sentences = batch
word, char, pos, heads, types, masks, lengths = input_encoder
heads_pred, types_pred, _, _ = network.decode(
word,
char,
pos,
mask=masks,
length=lengths,
beam=beam,
leading_symbolic=conllx_stacked_data.NUM_SYMBOLIC_TAGS)
word = word.data.cpu().numpy()
pos = pos.data.cpu().numpy()
lengths = lengths.cpu().numpy()
heads = heads.data.cpu().numpy()
types = types.data.cpu().numpy()
pred_writer.write(sentences,
word,
pos,
heads_pred,
types_pred,
lengths,
symbolic_root=True)
gold_writer.write(sentences,
word,
pos,
heads,
types,
lengths,
symbolic_root=True)
stats, stats_nopunc, stats_root, num_inst = parser.eval(
word,
pos,
heads_pred,
types_pred,
heads,
types,
word_alphabet,
pos_alphabet,
lengths,
punct_set=punct_set,
symbolic_root=True)
ucorr, lcorr, total, ucm, lcm = stats
ucorr_nopunc, lcorr_nopunc, total_nopunc, ucm_nopunc, lcm_nopunc = stats_nopunc
corr_root, total_root = stats_root
dev_ucorr += ucorr
dev_lcorr += lcorr
dev_total += total
dev_ucomlpete += ucm
dev_lcomplete += lcm
dev_ucorr_nopunc += ucorr_nopunc
dev_lcorr_nopunc += lcorr_nopunc
dev_total_nopunc += total_nopunc
dev_ucomlpete_nopunc += ucm_nopunc
dev_lcomplete_nopunc += lcm_nopunc
dev_root_corr += corr_root
dev_total_root += total_root
dev_total_inst += num_inst
pred_writer.close()
gold_writer.close()
print(
'W. Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%%'
% (dev_ucorr, dev_lcorr, dev_total, dev_ucorr * 100 / dev_total,
dev_lcorr * 100 / dev_total, dev_ucomlpete * 100 /
dev_total_inst, dev_lcomplete * 100 / dev_total_inst))
print(
'Wo Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%%'
% (dev_ucorr_nopunc, dev_lcorr_nopunc, dev_total_nopunc,
dev_ucorr_nopunc * 100 / dev_total_nopunc, dev_lcorr_nopunc *
100 / dev_total_nopunc, dev_ucomlpete_nopunc * 100 /
dev_total_inst, dev_lcomplete_nopunc * 100 / dev_total_inst))
print('Root: corr: %d, total: %d, acc: %.2f%%' %
(dev_root_corr, dev_total_root,
dev_root_corr * 100 / dev_total_root))
if dev_lcorrect_nopunc < dev_lcorr_nopunc or (
dev_lcorrect_nopunc == dev_lcorr_nopunc
and dev_ucorrect_nopunc < dev_ucorr_nopunc):
dev_ucorrect_nopunc = dev_ucorr_nopunc
dev_lcorrect_nopunc = dev_lcorr_nopunc
dev_ucomlpete_match_nopunc = dev_ucomlpete_nopunc
dev_lcomplete_match_nopunc = dev_lcomplete_nopunc
dev_ucorrect = dev_ucorr
dev_lcorrect = dev_lcorr
dev_ucomlpete_match = dev_ucomlpete
dev_lcomplete_match = dev_lcomplete
dev_root_correct = dev_root_corr
best_epoch = epoch
patient = 0
# torch.save(network, model_name)
torch.save(network.state_dict(), model_name)
pred_filename = 'tmp/%spred_test%d' % (str(uid), epoch)
pred_writer.start(pred_filename)
gold_filename = 'tmp/%sgold_test%d' % (str(uid), epoch)
gold_writer.start(gold_filename)
test_ucorrect = 0.0
test_lcorrect = 0.0
test_ucomlpete_match = 0.0
test_lcomplete_match = 0.0
test_total = 0
test_ucorrect_nopunc = 0.0
test_lcorrect_nopunc = 0.0
test_ucomlpete_match_nopunc = 0.0
test_lcomplete_match_nopunc = 0.0
test_total_nopunc = 0
test_total_inst = 0
test_root_correct = 0.0
test_total_root = 0
for batch in conllx_stacked_data.iterate_batch_stacked_variable(
data_test, batch_size, use_gpu=use_gpu):
input_encoder, _, sentences = batch
word, char, pos, heads, types, masks, lengths = input_encoder
heads_pred, types_pred, _, _ = network.decode(
word,
char,
pos,
mask=masks,
length=lengths,
beam=beam,
leading_symbolic=conllx_stacked_data.NUM_SYMBOLIC_TAGS)
word = word.data.cpu().numpy()
pos = pos.data.cpu().numpy()
lengths = lengths.cpu().numpy()
heads = heads.data.cpu().numpy()
types = types.data.cpu().numpy()
pred_writer.write(sentences,
word,
pos,
heads_pred,
types_pred,
lengths,
symbolic_root=True)
gold_writer.write(sentences,
word,
pos,
heads,
types,
lengths,
symbolic_root=True)
stats, stats_nopunc, stats_root, num_inst = parser.eval(
word,
pos,
heads_pred,
types_pred,
heads,
types,
word_alphabet,
pos_alphabet,
lengths,
punct_set=punct_set,
symbolic_root=True)
ucorr, lcorr, total, ucm, lcm = stats
ucorr_nopunc, lcorr_nopunc, total_nopunc, ucm_nopunc, lcm_nopunc = stats_nopunc
corr_root, total_root = stats_root
test_ucorrect += ucorr
test_lcorrect += lcorr
test_total += total
test_ucomlpete_match += ucm
test_lcomplete_match += lcm
test_ucorrect_nopunc += ucorr_nopunc
test_lcorrect_nopunc += lcorr_nopunc
test_total_nopunc += total_nopunc
test_ucomlpete_match_nopunc += ucm_nopunc
test_lcomplete_match_nopunc += lcm_nopunc
test_root_correct += corr_root
test_total_root += total_root
test_total_inst += num_inst
pred_writer.close()
gold_writer.close()
else:
if dev_ucorr_nopunc * 100 / dev_total_nopunc < dev_ucorrect_nopunc * 100 / dev_total_nopunc - 5 or patient >= schedule:
# network = torch.load(model_name)
network.load_state_dict(torch.load(model_name))
lr = lr * decay_rate
optim = generate_optimizer(opt, lr, network.parameters())
patient = 0
decay += 1
if decay % double_schedule_decay == 0:
schedule *= 2
else:
patient += 1
print(
'----------------------------------------------------------------------------------------------------------------------------'
)
print(
'best dev W. Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)'
% (dev_ucorrect, dev_lcorrect, dev_total,
dev_ucorrect * 100 / dev_total, dev_lcorrect * 100 / dev_total,
dev_ucomlpete_match * 100 / dev_total_inst,
dev_lcomplete_match * 100 / dev_total_inst, best_epoch))
print(
'best dev Wo Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)'
% (dev_ucorrect_nopunc, dev_lcorrect_nopunc, dev_total_nopunc,
dev_ucorrect_nopunc * 100 / dev_total_nopunc,
dev_lcorrect_nopunc * 100 / dev_total_nopunc,
dev_ucomlpete_match_nopunc * 100 / dev_total_inst,
dev_lcomplete_match_nopunc * 100 / dev_total_inst, best_epoch))
print('best dev Root: corr: %d, total: %d, acc: %.2f%% (epoch: %d)' %
(dev_root_correct, dev_total_root,
dev_root_correct * 100 / dev_total_root, best_epoch))
if test_total_inst != 0 or test_total != 0:
print(
'----------------------------------------------------------------------------------------------------------------------------'
)
print(
'best test W. Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)'
% (test_ucorrect, test_lcorrect, test_total, test_ucorrect *
100 / test_total, test_lcorrect * 100 / test_total,
test_ucomlpete_match * 100 / test_total_inst,
test_lcomplete_match * 100 / test_total_inst, best_epoch))
print(
'best test Wo Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%% (epoch: %d)'
%
(test_ucorrect_nopunc, test_lcorrect_nopunc, test_total_nopunc,
test_ucorrect_nopunc * 100 / test_total_nopunc,
test_lcorrect_nopunc * 100 / test_total_nopunc,
test_ucomlpete_match_nopunc * 100 / test_total_inst,
test_lcomplete_match_nopunc * 100 / test_total_inst,
best_epoch))
print(
'best test Root: corr: %d, total: %d, acc: %.2f%% (epoch: %d)'
% (test_root_correct, test_total_root,
test_root_correct * 100 / test_total_root, best_epoch))
print(
'============================================================================================================================'
)
if decay == max_decay:
break
def main():
parser = argparse.ArgumentParser(
description='NER with bi-directional RNN-CNN')
parser.add_argument('--config',
type=str,
help='config file',
required=True)
parser.add_argument('--num_epochs',
type=int,
default=100,
help='Number of training epochs')
parser.add_argument('--batch_size',
type=int,
default=16,
help='Number of sentences in each batch')
parser.add_argument('--loss_type',
choices=['sentence', 'token'],
default='sentence',
help='loss type (default: sentence)')
parser.add_argument('--optim',
choices=['sgd', 'adam'],
help='type of optimizer',
required=True)
parser.add_argument('--learning_rate',
type=float,
default=0.1,
help='Learning rate')
parser.add_argument('--lr_decay',
type=float,
default=0.999995,
help='Decay rate of learning rate')
parser.add_argument('--amsgrad', action='store_true', help='AMS Grad')
parser.add_argument('--grad_clip',
type=float,
default=0,
help='max norm for gradient clip (default 0: no clip')
parser.add_argument('--warmup_steps',
type=int,
default=0,
metavar='N',
help='number of steps to warm up (default: 0)')
parser.add_argument('--weight_decay',
type=float,
default=0.0,
help='weight for l2 norm decay')
parser.add_argument('--unk_replace',
type=float,
default=0.,
help='The rate to replace a singleton word with UNK')
parser.add_argument('--embedding',
choices=['glove', 'senna', 'sskip', 'polyglot'],
help='Embedding for words',
required=True)
parser.add_argument('--embedding_dict', help='path for embedding dict')
parser.add_argument('--train',
help='path for training file.',
required=True)
parser.add_argument('--dev', help='path for dev file.', required=True)
parser.add_argument('--test', help='path for test file.', required=True)
parser.add_argument('--model_path',
help='path for saving model file.',
required=True)
args = parser.parse_args()
logger = get_logger("NER")
args.cuda = torch.cuda.is_available()
device = torch.device('cuda', 0) if args.cuda else torch.device('cpu')
train_path = args.train
dev_path = args.dev
test_path = args.test
num_epochs = args.num_epochs
batch_size = args.batch_size
optim = args.optim
learning_rate = args.learning_rate
lr_decay = args.lr_decay
amsgrad = args.amsgrad
warmup_steps = args.warmup_steps
weight_decay = args.weight_decay
grad_clip = args.grad_clip
loss_ty_token = args.loss_type == 'token'
unk_replace = args.unk_replace
model_path = args.model_path
model_name = os.path.join(model_path, 'model.pt')
embedding = args.embedding
embedding_path = args.embedding_dict
print(args)
embedd_dict, embedd_dim = utils.load_embedding_dict(
embedding, embedding_path)
logger.info("Creating Alphabets")
alphabet_path = os.path.join(model_path, 'alphabets')
word_alphabet, char_alphabet, pos_alphabet, chunk_alphabet, ner_alphabet = conll03_data.create_alphabets(
alphabet_path,
train_path,
data_paths=[dev_path, test_path],
embedd_dict=embedd_dict,
max_vocabulary_size=50000)
logger.info("Word Alphabet Size: %d" % word_alphabet.size())
logger.info("Character Alphabet Size: %d" % char_alphabet.size())
logger.info("POS Alphabet Size: %d" % pos_alphabet.size())
logger.info("Chunk Alphabet Size: %d" % chunk_alphabet.size())
logger.info("NER Alphabet Size: %d" % ner_alphabet.size())
logger.info("Reading Data")
data_train = conll03_data.read_bucketed_data(train_path, word_alphabet,
char_alphabet, pos_alphabet,
chunk_alphabet, ner_alphabet)
num_data = sum(data_train[1])
num_labels = ner_alphabet.size()
data_dev = conll03_data.read_data(dev_path, word_alphabet, char_alphabet,
pos_alphabet, chunk_alphabet,
ner_alphabet)
data_test = conll03_data.read_data(test_path, word_alphabet, char_alphabet,
pos_alphabet, chunk_alphabet,
ner_alphabet)
writer = CoNLL03Writer(word_alphabet, char_alphabet, pos_alphabet,
chunk_alphabet, ner_alphabet)
def construct_word_embedding_table():
scale = np.sqrt(3.0 / embedd_dim)
table = np.empty([word_alphabet.size(), embedd_dim], dtype=np.float32)
table[conll03_data.UNK_ID, :] = np.random.uniform(
-scale, scale, [1, embedd_dim]).astype(np.float32)
oov = 0
for word, index in word_alphabet.items():
if word in embedd_dict:
embedding = embedd_dict[word]
elif word.lower() in embedd_dict:
embedding = embedd_dict[word.lower()]
else:
embedding = np.random.uniform(
-scale, scale, [1, embedd_dim]).astype(np.float32)
oov += 1
table[index, :] = embedding
print('oov: %d' % oov)
return torch.from_numpy(table)
word_table = construct_word_embedding_table()
logger.info("constructing network...")
hyps = json.load(open(args.config, 'r'))
json.dump(hyps,
open(os.path.join(model_path, 'config.json'), 'w'),
indent=2)
dropout = hyps['dropout']
crf = hyps['crf']
bigram = hyps['bigram']
assert embedd_dim == hyps['embedd_dim']
char_dim = hyps['char_dim']
mode = hyps['rnn_mode']
hidden_size = hyps['hidden_size']
out_features = hyps['out_features']
num_layers = hyps['num_layers']
p_in = hyps['p_in']
p_out = hyps['p_out']
p_rnn = hyps['p_rnn']
activation = hyps['activation']
if dropout == 'std':
if crf:
network = BiRecurrentConvCRF(embedd_dim,
word_alphabet.size(),
char_dim,
char_alphabet.size(),
mode,
hidden_size,
out_features,
num_layers,
num_labels,
embedd_word=word_table,
p_in=p_in,
p_out=p_out,
p_rnn=p_rnn,
bigram=bigram,
activation=activation)
else:
network = BiRecurrentConv(embedd_dim,
word_alphabet.size(),
char_dim,
char_alphabet.size(),
mode,
hidden_size,
out_features,
num_layers,
num_labels,
embedd_word=word_table,
p_in=p_in,
p_out=p_out,
p_rnn=p_rnn,
activation=activation)
elif dropout == 'variational':
if crf:
network = BiVarRecurrentConvCRF(embedd_dim,
word_alphabet.size(),
char_dim,
char_alphabet.size(),
mode,
hidden_size,
out_features,
num_layers,
num_labels,
embedd_word=word_table,
p_in=p_in,
p_out=p_out,
p_rnn=p_rnn,
bigram=bigram,
activation=activation)
else:
network = BiVarRecurrentConv(embedd_dim,
word_alphabet.size(),
char_dim,
char_alphabet.size(),
mode,
hidden_size,
out_features,
num_layers,
num_labels,
embedd_word=word_table,
p_in=p_in,
p_out=p_out,
p_rnn=p_rnn,
activation=activation)
else:
raise ValueError('Unkown dropout type: {}'.format(dropout))
network = network.to(device)
optimizer, scheduler = get_optimizer(network.parameters(), optim,
learning_rate, lr_decay, amsgrad,
weight_decay, warmup_steps)
model = "{}-CNN{}".format(mode, "-CRF" if crf else "")
logger.info("Network: %s, num_layer=%d, hidden=%d, act=%s" %
(model, num_layers, hidden_size, activation))
logger.info(
"training: l2: %f, (#training data: %d, batch: %d, unk replace: %.2f)"
% (weight_decay, num_data, batch_size, unk_replace))
logger.info("dropout(in, out, rnn): %s(%.2f, %.2f, %s)" %
(dropout, p_in, p_out, p_rnn))
print('# of Parameters: %d' %
(sum([param.numel() for param in network.parameters()])))
best_f1 = 0.0
best_acc = 0.0
best_precision = 0.0
best_recall = 0.0
test_f1 = 0.0
test_acc = 0.0
test_precision = 0.0
test_recall = 0.0
best_epoch = 0
patient = 0
num_batches = num_data // batch_size + 1
result_path = os.path.join(model_path, 'tmp')
if not os.path.exists(result_path):
os.makedirs(result_path)
for epoch in range(1, num_epochs + 1):
start_time = time.time()
train_loss = 0.
num_insts = 0
num_words = 0
num_back = 0
network.train()
lr = scheduler.get_lr()[0]
print('Epoch %d (%s, lr=%.6f, lr decay=%.6f, amsgrad=%s, l2=%.1e): ' %
(epoch, optim, lr, lr_decay, amsgrad, weight_decay))
if args.cuda:
torch.cuda.empty_cache()
gc.collect()
for step, data in enumerate(
iterate_data(data_train,
batch_size,
bucketed=True,
unk_replace=unk_replace,
shuffle=True)):
optimizer.zero_grad()
words = data['WORD'].to(device)
chars = data['CHAR'].to(device)
labels = data['NER'].to(device)
masks = data['MASK'].to(device)
nbatch = words.size(0)
nwords = masks.sum().item()
loss_total = network.loss(words, chars, labels, mask=masks).sum()
if loss_ty_token:
loss = loss_total.div(nwords)
else:
loss = loss_total.div(nbatch)
loss.backward()
if grad_clip > 0:
clip_grad_norm_(network.parameters(), grad_clip)
optimizer.step()
scheduler.step()
with torch.no_grad():
num_insts += nbatch
num_words += nwords
train_loss += loss_total.item()
# update log
if step % 100 == 0:
torch.cuda.empty_cache()
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
curr_lr = scheduler.get_lr()[0]
log_info = '[%d/%d (%.0f%%) lr=%.6f] loss: %.4f (%.4f)' % (
step, num_batches, 100. * step / num_batches, curr_lr,
train_loss / num_insts, train_loss / num_words)
sys.stdout.write(log_info)
sys.stdout.flush()
num_back = len(log_info)
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
print('total: %d (%d), loss: %.4f (%.4f), time: %.2fs' %
(num_insts, num_words, train_loss / num_insts,
train_loss / num_words, time.time() - start_time))
print('-' * 100)
# evaluate performance on dev data
with torch.no_grad():
outfile = os.path.join(result_path, 'pred_dev%d' % epoch)
scorefile = os.path.join(result_path, "score_dev%d" % epoch)
acc, precision, recall, f1 = eval(data_dev, network, writer,
outfile, scorefile, device)
print(
'Dev acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%%'
% (acc, precision, recall, f1))
if best_f1 < f1:
torch.save(network.state_dict(), model_name)
best_f1 = f1
best_acc = acc
best_precision = precision
best_recall = recall
best_epoch = epoch
# evaluate on test data when better performance detected
outfile = os.path.join(result_path, 'pred_test%d' % epoch)
scorefile = os.path.join(result_path, "score_test%d" % epoch)
test_acc, test_precision, test_recall, test_f1 = eval(
data_test, network, writer, outfile, scorefile, device)
print(
'test acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%%'
% (test_acc, test_precision, test_recall, test_f1))
patient = 0
else:
patient += 1
print('-' * 100)
print(
"Best dev acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d (%d))"
% (best_acc, best_precision, best_recall, best_f1, best_epoch,
patient))
print(
"Best test acc: %.2f%%, precision: %.2f%%, recall: %.2f%%, F1: %.2f%% (epoch: %d (%d))"
% (test_acc, test_precision, test_recall, test_f1, best_epoch,
patient))
print('=' * 100)
if patient > 4:
logger.info('reset optimizer momentums')
scheduler.reset_state()
patient = 0
def main():
args_parser = argparse.ArgumentParser(description='Testing with stack pointer parser')
args_parser.add_argument('--model_path', help='path for parser model directory', required=True)
args_parser.add_argument('--model_name', help='parser model file', required=True)
args_parser.add_argument('--output_path', help='path for result with parser model', required=True)
args_parser.add_argument('--test', required=True)
args_parser.add_argument('--beam', type=int, default=1, help='Beam size for decoding')
args_parser.add_argument('--use_gpu', action='store_true', help='use the gpu')
args_parser.add_argument('--batch_size', type=int, default=32)
args = args_parser.parse_args()
logger = get_logger("PtrParser Decoding")
model_path = args.model_path
model_name = os.path.join(model_path, args.model_name)
output_path = args.output_path
beam = args.beam
use_gpu = args.use_gpu
test_path = args.test
batch_size = args.batch_size
def load_args():
with open("{}.arg.json".format(model_name)) as f:
key_parameters = json.loads(f.read())
return key_parameters['args'], key_parameters['kwargs']
# arguments = [word_dim, num_words, char_dim, num_chars, pos_dim, num_pos, char_num_filters, char_window, eojul_num_filters, eojul_window,
# mode, input_size_decoder, hidden_size, encoder_layers, decoder_layers,
# num_types, arc_space, type_space]
# kwargs = {'p_in': p_in, 'p_out': p_out, 'p_rnn': p_rnn, 'biaffine': True, 'pos': use_pos, 'char': use_char, 'eojul': use_eojul, 'prior_order': prior_order,
# 'skipConnect': skipConnect, 'grandPar': grandPar, 'sibling': sibling}
arguments, kwarguments = load_args()
mode = arguments[10]
input_size_decoder = arguments[11]
hidden_size = arguments[12]
arc_space = arguments[16]
type_space = arguments[17]
encoder_layers = arguments[13]
decoder_layers = arguments[14]
char_num_filters = arguments[6]
eojul_num_filters = arguments[8]
p_rnn = kwarguments['p_rnn']
p_in = kwarguments['p_in']
p_out = kwarguments['p_out']
prior_order = kwarguments['prior_order']
skipConnect = kwarguments['skipConnect']
grandPar = kwarguments['grandPar']
sibling = kwarguments['sibling']
use_char = kwarguments['char']
use_pos = kwarguments['pos']
use_eojul = kwarguments['eojul']
logger.info("Creating Alphabets")
alphabet_path = os.path.join(model_path, 'alphabets/')
word_alphabet, char_alphabet, pos_alphabet, type_alphabet = conllx_stacked_data.load_alphabets(alphabet_path)
num_words = word_alphabet.size()
num_chars = char_alphabet.size()
num_pos = pos_alphabet.size()
num_types = type_alphabet.size()
logger.info("Word Alphabet Size: %d" % num_words)
logger.info("Character Alphabet Size: %d" % num_chars)
logger.info("POS Alphabet Size: %d" % num_pos)
logger.info("Type Alphabet Size: %d" % num_types)
logger.info("Reading Data")
data_test = conllx_stacked_data.read_stacked_data_to_variable(test_path, word_alphabet, char_alphabet, pos_alphabet, type_alphabet, use_gpu=use_gpu, prior_order=prior_order)
num_data = sum(data_test[1])
word_table = None
word_dim = arguments[0]
char_table = None
char_dim = arguments[2]
pos_table = None
pos_dim = arguments[4]
char_window = arguments[7]
eojul_window = arguments[9]
if arguments[1] != num_words:
print("Mismatching number of word vocabulary({} != {})".format(arguments[1], num_words))
exit()
if arguments[3] != num_chars:
print("Mismatching number of character vocabulary({} != {})".format(arguments[3], num_chars))
exit()
if arguments[5] != num_pos:
print("Mismatching number of part-of-speech vocabulary({} != {})".format(arguments[5], num_pos))
exit()
if arguments[15] != num_types:
print("Mismatching number types of vocabulary({} != {})".format(arguments[14], num_types))
exit()
network = StackPtrNet(word_dim, num_words, char_dim, num_chars, pos_dim, num_pos, char_num_filters, char_window, eojul_num_filters, eojul_window,
mode, input_size_decoder, hidden_size, encoder_layers, decoder_layers,
num_types, arc_space, type_space,
embedd_word=word_table, embedd_char=char_table, embedd_pos=pos_table, p_in=p_in, p_out=p_out, p_rnn=p_rnn,
biaffine=True, pos=use_pos, char=use_char, eojul=use_eojul, prior_order=prior_order,
skipConnect=skipConnect, grandPar=grandPar, sibling=sibling)
if use_gpu:
network.cuda()
print("loading model: {}".format(model_name))
if use_gpu:
network.load_state_dict(torch.load(model_name))
else:
network.load_state_dict(torch.load(model_name, map_location='cpu'))
pred_writer = CoNLLXWriter(word_alphabet, char_alphabet, pos_alphabet, type_alphabet)
gold_writer = CoNLLXWriter(word_alphabet, char_alphabet, pos_alphabet, type_alphabet)
logger.info("Embedding dim: word=%d, char=%d, pos=%d" % (word_dim, char_dim, pos_dim))
logger.info("Char CNN: filter=%d, kernel=%d" % (char_num_filters, char_window))
logger.info("Eojul CNN: filter=%d, kernel=%d" % (eojul_num_filters, eojul_window))
logger.info("RNN: %s, num_layer=(%d, %d), input_dec=%d, hidden=%d, arc_space=%d, type_space=%d" % (
mode, encoder_layers, decoder_layers, input_size_decoder, hidden_size, arc_space, type_space))
logger.info("dropout(in, out, rnn): (%.2f, %.2f, %s)" % (p_in, p_out, p_rnn))
logger.info('prior order: %s, grand parent: %s, sibling: %s, ' % (prior_order, grandPar, sibling))
logger.info('skip connect: %s, beam: %d, use_gpu: %s' % (skipConnect, beam, use_gpu))
network.eval()
pred_filename = '%s/pred_test.txt' % (output_path, )
pred_writer.start(pred_filename)
gold_filename = '%s/gold_test.txt' % (output_path, )
gold_writer.start(gold_filename)
test_ucorrect = 0.0
test_lcorrect = 0.0
test_total = 0
test_total_inst = 0
test_root_correct = 0.0
test_total_root = 0
num_back = 0
for batch in conllx_stacked_data.iterate_batch_stacked_variable(data_test, batch_size, use_gpu=use_gpu):
input_encoder, _, sentences = batch
word, char, pos, heads, types, masks, lengths = input_encoder
heads_pred, types_pred, _, _ = network.decode(word, char, pos, mask=masks, length=lengths, beam=beam, leading_symbolic=conllx_stacked_data.NUM_SYMBOLIC_TAGS)
word = word.data.cpu().numpy()
pos = pos.data.cpu().numpy()
lengths = lengths.cpu().numpy()
heads = heads.data.cpu().numpy()
types = types.data.cpu().numpy()
pred_writer.write(sentences, word, pos, heads_pred, types_pred, lengths, symbolic_root=True)
gold_writer.write(sentences, word, pos, heads, types, lengths, symbolic_root=True)
stats, _, stats_root, num_inst = parser.eval(word, pos, heads_pred, types_pred, heads, types, word_alphabet, pos_alphabet, lengths, punct_set=None,
symbolic_root=True)
ucorr, lcorr, total, _, _ = stats
corr_root, total_root = stats_root
test_ucorrect += ucorr
test_lcorrect += lcorr
test_total += total
test_root_correct += corr_root
test_total_root += total_root
test_total_inst += num_inst
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
log_info = "({:.1f}%){}/{}".format(test_total_inst * 100 / num_data, test_total_inst, num_data)
sys.stdout.write(log_info)
sys.stdout.flush()
num_back = len(log_info)
pred_writer.close()
gold_writer.close()
sys.stdout.write("\b" * num_back)
sys.stdout.write(" " * num_back)
sys.stdout.write("\b" * num_back)
print('----------------------------------------------------------------------------------------------------------------------------')
print('best test W. Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%' % (
test_ucorrect, test_lcorrect, test_total, test_ucorrect * 100 / test_total, test_lcorrect * 100 / test_total))
print('best test Root: corr: %d, total: %d, acc: %.2f%%' % (test_root_correct, test_total_root, test_root_correct * 100 / test_total_root))
print('============================================================================================================================')
def main():
args_parser = argparse.ArgumentParser(
description='Tuning with stack pointer parser')
args_parser.add_argument(
'--test') # "data/POS-penn/wsj/split1/wsj1.test.original"
args_parser.add_argument('--model_path',
help='path for saving model file.',
required=True)
args_parser.add_argument('--model_name',
help='name for saving model file.',
required=True)
args_parser.add_argument('--punctuation',
nargs='+',
type=str,
help='List of punctuations')
args_parser.add_argument('--beam',
type=int,
default=1,
help='Beam size for decoding')
args_parser.add_argument('--ordered',
action='store_true',
help='Using order constraints in decoding')
args_parser.add_argument('--display',
action='store_true',
help='Display wrong examples')
args_parser.add_argument('--gpu', action='store_true', help='Using GPU')
args_parser.add_argument(
'--prior_order',
choices=['inside_out', 'left2right', 'deep_first', 'shallow_first'],
help='prior order of children.',
required=True)
args = args_parser.parse_args()
logger = get_logger("Analyzer")
test_path = args.test
model_path = args.model_path
model_name = args.model_name
alphabet_path = os.path.join(model_path, 'alphabets/')
model_name = os.path.join(model_path, model_name)
word_alphabet, char_alphabet, pos_alphabet, \
type_alphabet = conllx_stacked_data.create_alphabets(alphabet_path, None, data_paths=[None, None], max_vocabulary_size=50000, embedd_dict=None)
num_words = word_alphabet.size()
num_chars = char_alphabet.size()
num_pos = pos_alphabet.size()
num_types = type_alphabet.size()
logger.info("Word Alphabet Size: %d" % num_words)
logger.info("Character Alphabet Size: %d" % num_chars)
logger.info("POS Alphabet Size: %d" % num_pos)
logger.info("Type Alphabet Size: %d" % num_types)
use_gpu = args.gpu
prior_order = args.prior_order
beam = args.beam
ordered = args.ordered
display_inst = args.display
data_test = conllx_stacked_data.read_stacked_data_to_variable(
test_path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
use_gpu=use_gpu,
volatile=True,
prior_order=prior_order)
logger.info('use gpu: %s, beam: %d, ordered: %s' %
(use_gpu, beam, ordered))
punct_set = None
punctuation = args.punctuation
if punctuation is not None:
punct_set = set(punctuation)
logger.info("punctuations(%d): %s" %
(len(punct_set), ' '.join(punct_set)))
pred_writer = CoNLLXWriter(word_alphabet, char_alphabet, pos_alphabet,
type_alphabet)
gold_writer = CoNLLXWriter(word_alphabet, char_alphabet, pos_alphabet,
type_alphabet)
logger.info('model: %s' % model_name)
network = torch.load(model_name)
if use_gpu:
network.cuda()
else:
network.cpu()
network.eval()
test_ucorrect = 0.0
test_lcorrect = 0.0
test_ucomlpete_match = 0.0
test_lcomplete_match = 0.0
test_total = 0
test_ucorrect_nopunc = 0.0
test_lcorrect_nopunc = 0.0
test_ucomlpete_match_nopunc = 0.0
test_lcomplete_match_nopunc = 0.0
test_total_nopunc = 0
test_total_inst = 0
test_root_correct = 0.0
test_total_root = 0
test_ucorrect_stack_leaf = 0.0
test_ucorrect_stack_non_leaf = 0.0
test_lcorrect_stack_leaf = 0.0
test_lcorrect_stack_non_leaf = 0.0
test_leaf = 0
test_non_leaf = 0
pred_writer.start('tmp/analyze_pred_%s' % str(uid))
gold_writer.start('tmp/analyze_gold_%s' % str(uid))
sent = 0
start_time = time.time()
for batch in conllx_stacked_data.iterate_batch_stacked_variable(
data_test, 1):
sys.stdout.write('%d, ' % sent)
sys.stdout.flush()
sent += 1
input_encoder, input_decoder = batch
word, char, pos, heads, types, masks, lengths = input_encoder
stacked_heads, children, siblings, stacked_types, skip_connect, mask_d, lengths_d = input_decoder
heads_pred, types_pred, children_pred, stacked_types_pred = network.decode(
word,
char,
pos,
mask=masks,
length=lengths,
beam=beam,
ordered=ordered,
leading_symbolic=conllx_stacked_data.NUM_SYMBOLIC_TAGS)
stacked_heads = stacked_heads.data
children = children.data
stacked_types = stacked_types.data
children_pred = torch.from_numpy(children_pred).long()
stacked_types_pred = torch.from_numpy(stacked_types_pred).long()
if use_gpu:
children_pred = children_pred.cuda()
stacked_types_pred = stacked_types_pred.cuda()
mask_d = mask_d.data
mask_leaf = torch.eq(children, stacked_heads).float()
mask_non_leaf = (1.0 - mask_leaf)
mask_leaf = mask_leaf * mask_d
mask_non_leaf = mask_non_leaf * mask_d
num_leaf = mask_leaf.sum()
num_non_leaf = mask_non_leaf.sum()
ucorr_stack = torch.eq(children_pred, children).float()
lcorr_stack = ucorr_stack * torch.eq(stacked_types_pred,
stacked_types).float()
ucorr_stack_leaf = (ucorr_stack * mask_leaf).sum()
ucorr_stack_non_leaf = (ucorr_stack * mask_non_leaf).sum()
lcorr_stack_leaf = (lcorr_stack * mask_leaf).sum()
lcorr_stack_non_leaf = (lcorr_stack * mask_non_leaf).sum()
test_ucorrect_stack_leaf += ucorr_stack_leaf
test_ucorrect_stack_non_leaf += ucorr_stack_non_leaf
test_lcorrect_stack_leaf += lcorr_stack_leaf
test_lcorrect_stack_non_leaf += lcorr_stack_non_leaf
test_leaf += num_leaf
test_non_leaf += num_non_leaf
# ------------------------------------------------------------------------------------------------
word = word.data.cpu().numpy()
pos = pos.data.cpu().numpy()
lengths = lengths.cpu().numpy()
heads = heads.data.cpu().numpy()
types = types.data.cpu().numpy()
pred_writer.write(word,
pos,
heads_pred,
types_pred,
lengths,
symbolic_root=True)
gold_writer.write(word, pos, heads, types, lengths, symbolic_root=True)
stats, stats_nopunc, stats_root, num_inst = parser.eval(
word,
pos,
heads_pred,
types_pred,
heads,
types,
word_alphabet,
pos_alphabet,
lengths,
punct_set=punct_set,
symbolic_root=True)
ucorr, lcorr, total, ucm, lcm = stats
ucorr_nopunc, lcorr_nopunc, total_nopunc, ucm_nopunc, lcm_nopunc = stats_nopunc
corr_root, total_root = stats_root
test_ucorrect += ucorr
test_lcorrect += lcorr
test_total += total
test_ucomlpete_match += ucm
test_lcomplete_match += lcm
test_ucorrect_nopunc += ucorr_nopunc
test_lcorrect_nopunc += lcorr_nopunc
test_total_nopunc += total_nopunc
test_ucomlpete_match_nopunc += ucm_nopunc
test_lcomplete_match_nopunc += lcm_nopunc
test_root_correct += corr_root
test_total_root += total_root
test_total_inst += num_inst
pred_writer.close()
gold_writer.close()
print('\ntime: %.2fs' % (time.time() - start_time))
print(
'test W. Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%%'
%
(test_ucorrect, test_lcorrect, test_total, test_ucorrect * 100 /
test_total, test_lcorrect * 100 / test_total, test_ucomlpete_match *
100 / test_total_inst, test_lcomplete_match * 100 / test_total_inst))
print(
'test Wo Punct: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%, ucm: %.2f%%, lcm: %.2f%%'
%
(test_ucorrect_nopunc, test_lcorrect_nopunc, test_total_nopunc,
test_ucorrect_nopunc * 100 / test_total_nopunc, test_lcorrect_nopunc *
100 / test_total_nopunc, test_ucomlpete_match_nopunc * 100 /
test_total_inst, test_lcomplete_match_nopunc * 100 / test_total_inst))
print('test Root: corr: %d, total: %d, acc: %.2f%%' %
(test_root_correct, test_total_root,
test_root_correct * 100 / test_total_root))
print(
'============================================================================================================================'
)
print(
'Stack leaf: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%'
% (test_ucorrect_stack_leaf, test_lcorrect_stack_leaf, test_leaf,
test_ucorrect_stack_leaf * 100 / test_leaf,
test_lcorrect_stack_leaf * 100 / test_leaf))
print(
'Stack non_leaf: ucorr: %d, lcorr: %d, total: %d, uas: %.2f%%, las: %.2f%%'
% (test_ucorrect_stack_non_leaf, test_lcorrect_stack_non_leaf,
test_non_leaf, test_ucorrect_stack_non_leaf * 100 / test_non_leaf,
test_lcorrect_stack_non_leaf * 100 / test_non_leaf))
print(
'============================================================================================================================'
)
def analyze():
np.set_printoptions(linewidth=100000)
pred_path = 'tmp/analyze_pred_%s' % str(uid)
data_gold = conllx_stacked_data.read_stacked_data_to_variable(
test_path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
use_gpu=use_gpu,
volatile=True,
prior_order=prior_order)
data_pred = conllx_stacked_data.read_stacked_data_to_variable(
pred_path,
word_alphabet,
char_alphabet,
pos_alphabet,
type_alphabet,
use_gpu=use_gpu,
volatile=True,
prior_order=prior_order)
gold_iter = conllx_stacked_data.iterate_batch_stacked_variable(
data_gold, 1)
test_iter = conllx_stacked_data.iterate_batch_stacked_variable(
data_pred, 1)
model_err = 0
search_err = 0
type_err = 0
for gold, pred in zip(gold_iter, test_iter):
gold_encoder, gold_decoder = gold
word, char, pos, gold_heads, gold_types, masks, lengths = gold_encoder
gold_stacked_heads, gold_children, gold_siblings, gold_stacked_types, gold_skip_connect, gold_mask_d, gold_lengths_d = gold_decoder
pred_encoder, pred_decoder = pred
_, _, _, pred_heads, pred_types, _, _ = pred_encoder
pred_stacked_heads, pred_children, pred_siblings, pred_stacked_types, pred_skip_connect, pred_mask_d, pred_lengths_d = pred_decoder
assert gold_heads.size() == pred_heads.size(
), 'sentence dis-match.'
ucorr_stack = torch.eq(pred_children, gold_children).float()
lcorr_stack = ucorr_stack * torch.eq(pred_stacked_types,
gold_stacked_types).float()
ucorr_stack = (ucorr_stack * gold_mask_d).data.sum()
lcorr_stack = (lcorr_stack * gold_mask_d).data.sum()
num_stack = gold_mask_d.data.sum()
if lcorr_stack < num_stack:
loss_pred, loss_pred_arc, loss_pred_type = calc_loss(
network, word, char, pos, pred_heads, pred_stacked_heads,
pred_children, pred_siblings, pred_stacked_types,
pred_skip_connect, masks, lengths, pred_mask_d,
pred_lengths_d)
loss_gold, loss_gold_arc, loss_gold_type = calc_loss(
network, word, char, pos, gold_heads, gold_stacked_heads,
gold_children, gold_siblings, gold_stacked_types,
gold_skip_connect, masks, lengths, gold_mask_d,
gold_lengths_d)
if display_inst:
print('%d, %d, %d' % (ucorr_stack, lcorr_stack, num_stack))
print(
'pred(arc, type): %.4f (%.4f, %.4f), gold(arc, type): %.4f (%.4f, %.4f)'
% (loss_pred, loss_pred_arc, loss_pred_type, loss_gold,
loss_gold_arc, loss_gold_type))
word = word[0].data.cpu().numpy()
pos = pos[0].data.cpu().numpy()
head_gold = gold_heads[0].data.cpu().numpy()
type_gold = gold_types[0].data.cpu().numpy()
head_pred = pred_heads[0].data.cpu().numpy()
type_pred = pred_types[0].data.cpu().numpy()
display(word, pos, head_gold, type_gold, head_pred,
type_pred, lengths[0], word_alphabet, pos_alphabet,
type_alphabet)
length_dec = gold_lengths_d[0]
gold_display = np.empty([3, length_dec])
gold_display[0] = gold_stacked_types.data[0].cpu().numpy(
)[:length_dec]
gold_display[1] = gold_children.data[0].cpu().numpy(
)[:length_dec]
gold_display[2] = gold_stacked_heads.data[0].cpu().numpy(
)[:length_dec]
print(gold_display)
print(
'--------------------------------------------------------'
)
pred_display = np.empty([3,
pred_lengths_d[0]])[:length_dec]
pred_display[0] = pred_stacked_types.data[0].cpu().numpy(
)[:length_dec]
pred_display[1] = pred_children.data[0].cpu().numpy(
)[:length_dec]
pred_display[2] = pred_stacked_heads.data[0].cpu().numpy(
)[:length_dec]
print(pred_display)
print(
'========================================================'
)
raw_input()
if ucorr_stack == num_stack:
type_err += 1
elif loss_pred < loss_gold:
model_err += 1
else:
search_err += 1
print('type errors: %d' % type_err)
print('model errors: %d' % model_err)
print('search errors: %d' % search_err)
analyze()
