def test_round_trip():
# set up an op and Assign a value to it so we can read it out
axes = ng.make_axes([
ng.make_axis(name='A', length=2),
ng.make_axis(name='B', length=3),
])
x_op = ng.variable(axes)
assign_op = ng.AssignOp(x_op, 1)
with executor(assign_op) as assign_computation:
t = assign_computation.transformer
# Set initial value
assign_computation()
# Test value
np.testing.assert_allclose(serde_weights.extract_op(t, x_op), 1)
# write out values in x and graph
f = BytesIO()
# ## EXAMPLE OF HOW TO FULLY SERIALIZE A GRAPH ###
serde_weights.serialize_weights(t, [x_op], f)
graph_string = serde.serialize_graph([x_op])
# ## /EXAMPLE OF HOW TO FULLY SERIALIZE A GRAPH ###
f.seek(0)
# ## EXAMPLE OF HOW TO FULLY DESERIALIZE A GRAPH ###
new_ops = serde.deserialize_graph(graph_string)
serde_weights.deserialize_weights(t, new_ops, f)
# ## /EXAMPLE OF HOW TO FULLY DESERIALIZE A GRAPH ###
np.testing.assert_allclose(serde_weights.extract_op(t, new_ops[0]), 1)
def setup_restore(self, transformer, computation, filename):
"""
prepare restore function for loading weight from file to
weight variables in computation
Arguments:
transformer : transformer where the weights will be restored
computation (ComputationOp or dict of Ops):
A ComputationOp or dictionary of output Ops of interest.
filename: name of file with saved weights
"""
def match_ops(tensors, values):
"""
Match weights with tensor values loaded from file
"""
nodes = dict()
frontier = set(values)
visited = set()
def match_op(op_to_add):
"""
Match weight with loaded tensor value
"""
if isinstance(op_to_add, ng.TensorValueOp):
tensor = op_to_add.tensor
if isinstance(tensor, ng.AssignableTensorOp):
if tensor.is_persistent:
if tensor.is_constant:
pass
elif tensor.is_placeholder:
pass
else:
try:
nodes[tensor] = tensors[tensor.name]
except KeyError:
print(
"Warning: Missing weight in save file: "
+ tensor.name)
while len(frontier) > 0:
op_to_visit = frontier.pop()
match_op(op_to_visit)
visited.add(op_to_visit)
for arg in op_to_visit.args:
if arg not in visited:
frontier.add(arg)
for arg in op_to_visit.all_deps:
if arg not in visited:
frontier.add(arg)
return nodes
# load weight from file to tensors
savefile = SaverFile(filename)
tensors = savefile.read_values()
nodes = match_ops(tensors, get_root_ops(computation))
restore_ops = []
for op_to_save, op_value in nodes.items():
restore_ops.append(ng.AssignOp(op_to_save, op_value))
self.setter = transformer.computation(restore_ops)
def test_extract_op():
# set up an op and Assign a value to it so we can read it out
axes = ng.make_axes([
ng.make_axis(name='A', length=2),
ng.make_axis(name='B', length=3),
])
x_op = ng.variable(axes)
assign_op = ng.AssignOp(x_op, 1)
# extract values out of it and make sure they match expected results
with executor(assign_op) as comp_assignment:
t = comp_assignment.transformer
comp_assignment()
x_out = serde_weights.extract_op(t, x_op)
assert (x_out == np.ones(axes.lengths)).all()
def test_variable():
input_axes = ng.make_axes([
ng.make_axis(10),
ng.make_axis(3)
])
var = ng.variable(axes=input_axes)
assign_val = np.random.rand(10, 3)
var_assign = ng.AssignOp(tensor=var, val=assign_val)
var_seq = ng.sequential([var_assign, var])
var_comp = ng.computation(var_seq, "all")
results = dict()
weight_saver = Saver()
with closing(ngt.make_transformer()) as transformer:
var_func = transformer.add_computation(var_comp)
weight_saver.setup_save(transformer=transformer, computation=var_comp)
results['saved'] = var_func().copy()
weight_saver.save(filename="test_variable")
reassign_val = np.random.rand(10, 3)
var_reassign = ng.AssignOp(tensor=var, val=reassign_val)
var_recomp = ng.computation(var_reassign, "all")
var_read = ng.computation(var, "all")
with closing(ngt.make_transformer()) as restore_transformer:
var_recompfunc = restore_transformer.add_computation(var_recomp)
weight_saver.setup_restore(transformer=restore_transformer, computation=var_recomp,
filename="test_variable")
var_readfunc = restore_transformer.add_computation(var_read)
var_recompfunc()
results['reassigned'] = var_readfunc().copy()
weight_saver.restore()
results['restored'] = var_readfunc().copy()
os.remove("test_variable.npz")
assert np.allclose(results['saved'], assign_val, atol=0)
assert np.allclose(results['reassigned'], reassign_val, atol=0)
assert np.allclose(results['saved'], results['restored'], atol=0)
def test_extract_op(transformer_factory):
# set up an op and Assign a value to it so we can read it out
axes = ng.make_axes([
ng.make_axis(name='A', length=2),
ng.make_axis(name='B', length=3),
])
x_op = ng.variable(axes)
assign_op = ng.AssignOp(x_op, 1)
# extract values out of it and make sure they match expected results
with closing(ngt.make_transformer()) as t:
comp_assignment = t.computation(assign_op)
comp_assignment()
x_out = serde_weights.extract_op(t, x_op)
assert (x_out == np.ones(axes.lengths)).all()
def set_op_value(transformer, op, value):
"""
Given an op and a numpy array, set the op's value to the numpy array
"""
transformer.computation(ng.AssignOp(op, value))()
def assign_ops(ops, values):
assign_ops = [ng.AssignOp(op, value) for op, value in zip(ops, values)]
return ng.sequential(assign_ops)