def test_MCFLIRT_inputs():
input_map = dict(
args=dict(argstr="%s"),
bins=dict(argstr="-bins %d"),
cost=dict(argstr="-cost %s"),
dof=dict(argstr="-dof %d"),
environ=dict(nohash=True, usedefault=True),
ignore_exception=dict(nohash=True, usedefault=True),
in_file=dict(argstr="-in %s", mandatory=True, position=0),
init=dict(argstr="-init %s"),
interpolation=dict(argstr="-%s_final"),
mean_vol=dict(argstr="-meanvol"),
out_file=dict(argstr="-out %s", genfile=True, hash_files=False),
output_type=dict(),
ref_file=dict(argstr="-reffile %s"),
ref_vol=dict(argstr="-refvol %d"),
rotation=dict(argstr="-rotation %d"),
save_mats=dict(argstr="-mats"),
save_plots=dict(argstr="-plots"),
save_rms=dict(argstr="-rmsabs -rmsrel"),
scaling=dict(argstr="-scaling %.2f"),
smooth=dict(argstr="-smooth %.2f"),
stages=dict(argstr="-stages %d"),
stats_imgs=dict(argstr="-stats"),
terminal_output=dict(nohash=True),
use_contour=dict(argstr="-edge"),
use_gradient=dict(argstr="-gdt"),
)
inputs = MCFLIRT.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value
def test_MCFLIRT_inputs():
input_map = dict(
args=dict(argstr='%s', ),
bins=dict(argstr='-bins %d', ),
cost=dict(argstr='-cost %s', ),
dof=dict(argstr='-dof %d', ),
environ=dict(
nohash=True,
usedefault=True,
),
ignore_exception=dict(
nohash=True,
usedefault=True,
),
in_file=dict(
argstr='-in %s',
mandatory=True,
position=0,
),
init=dict(argstr='-init %s', ),
interpolation=dict(argstr='-%s_final', ),
mean_vol=dict(argstr='-meanvol', ),
out_file=dict(
argstr='-out %s',
genfile=True,
hash_files=False,
),
output_type=dict(),
ref_file=dict(argstr='-reffile %s', ),
ref_vol=dict(argstr='-refvol %d', ),
rotation=dict(argstr='-rotation %d', ),
save_mats=dict(argstr='-mats', ),
save_plots=dict(argstr='-plots', ),
save_rms=dict(argstr='-rmsabs -rmsrel', ),
scaling=dict(argstr='-scaling %.2f', ),
smooth=dict(argstr='-smooth %.2f', ),
stages=dict(argstr='-stages %d', ),
stats_imgs=dict(argstr='-stats', ),
terminal_output=dict(
mandatory=True,
nohash=True,
),
use_contour=dict(argstr='-edge', ),
use_gradient=dict(argstr='-gdt', ),
)
inputs = MCFLIRT.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value
