def syntaxSig():
# 11. Run ctrl.out with various parameter settings.
for sample, measure, feature, norm in variants:
multirun(6,
*norte.icetasks(consts.swediaSites,
feature, 'icesig.cpp', measure, sample, norm))
norte.combine(feature, 'sig', measure, sample, norm)
def syntaxDist():
# 9. Run ctrl.out with various parameter settings.
for sample, measure, feature, norm in variants:
multirun(6, *norte.icetasks(consts.swediaSites,
feature, 'icedist.cpp',
measure, sample, norm, 10))
norte.combine(feature, 'dist', measure, sample, norm, 10)
def syntaxFeatures():
run('ghc -O2 --make RankFeatures')
clusters = sorted(consts.agreeClusters.keys(), reverse=True)
# 12. Dump a list of all features between each pair of site clusters.
for sample in consts.samples:
for feature in consts.features:
for norm2 in ['over', 'ratio']:
# 12.1 Make cluster files first
norte.combineFeatures(consts.agreeClusters, feature)
multirun(6,
*norte.icetasks(clusters, feature,
'icefeat.cpp', 'r', sample, norm2))
# 12.2 Then analyse it
tmps = ' '.join(["%s-%s-tmp.txt" % pair
for pair in norte.pairwise(clusters)])
run('./RankFeatures %s >feat-5-%s-%s-%s.txt'
% (tmps,sample,feature,norm2))