def main():
if float(sys.version[:3]) < 2.7 or float(sys.version[:3]) >= 2.8:
sys.stderr.write("CRITICAL: Python version must be 2.7!\n")
sys.exit(1)
ext_modules = [
Extension("MACS2.cProb", ["MACS2/cProb.c"], libraries=["m"], include_dirs=numpy_include_dir),
Extension("MACS2.IO.cParser", ["MACS2/IO/cParser.c"], include_dirs=numpy_include_dir),
Extension("MACS2.cPileup", ["MACS2/cPileup.c"], include_dirs=numpy_include_dir),
Extension("MACS2.cArray", ["MACS2/cArray.c"]),
Extension("MACS2.cPeakModel", ["MACS2/cPeakModel.c"], include_dirs=numpy_include_dir),
Extension("MACS2.cPeakDetect", ["MACS2/cPeakDetect.c"]),
Extension("MACS2.cSignal", ["MACS2/cSignal.c"], include_dirs=numpy_include_dir),
Extension("MACS2.IO.cPeakIO", ["MACS2/IO/cPeakIO.c"]),
Extension("MACS2.IO.cBedGraphIO", ["MACS2/IO/cBedGraphIO.c"]),
Extension("MACS2.IO.cFixWidthTrack", ["MACS2/IO/cFixWidthTrack.c"], include_dirs=numpy_include_dir),
Extension("MACS2.IO.cPairedEndTrack", ["MACS2/IO/cPairedEndTrack.c"], include_dirs=numpy_include_dir),
Extension("MACS2.IO.cBedGraph", ["MACS2/IO/cBedGraph.c"], libraries=["m"]),
Extension("MACS2.IO.cScoreTrack", ["MACS2/IO/cScoreTrack.c"], include_dirs=numpy_include_dir),
# Extension("MACS2.IO.cDiffScore", ["MACS2/IO/cDiffScore.c"], include_dirs=numpy_include_dir ),
Extension("MACS2.IO.cCallPeakUnit", ["MACS2/IO/cCallPeakUnit.c"], include_dirs=numpy_include_dir),
Extension("MACS2.hashtable", ["MACS2/hashtable.c"], include_dirs=["MACS2/", numpy_get_include()]),
Extension(
"MACS2.Statistics",
["MACS2/Statistics.c", "MACS2/cStatistics.c"],
libraries=["m"],
include_dirs=["MACS2/", numpy_get_include()],
),
]
setup(
name="MACS2",
version="2.1.0.20140616",
description="Model Based Analysis for ChIP-Seq data",
author="Tao Liu",
author_email="*****@*****.**",
url="http://github.com/taoliu/MACS/",
package_dir={"MACS2": "MACS2"},
packages=["MACS2", "MACS2.IO"], # , 'MACS2.data'],
# package_data={'MACS2': ['data/*.dat']},
scripts=["bin/macs2"],
classifiers=[
"Development Status :: 4 - Beta",
"Environment :: Console",
"Intended Audience :: Developers",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: BSD License",
"Operating System :: MacOS :: MacOS X",
"Operating System :: POSIX",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Programming Language :: Python",
],
install_requires=[
"numpy>=1.6",
#'scipy',
],
cmdclass=command_classes,
ext_modules=ext_modules,
)
def doall():
setup(name='HRTime', version='1.0',
description = 'a package providing access to the high resolution timer',
ext_modules = [Extension('HRTime',
sources=['HRTime.c'],
)])
setup(name='rtsched', version='1.0',
description = 'a package providing (limited) real-time processing/priority functionality',
ext_modules = [Extension('rtsched',
sources=['rtsched/rtsched.c'],
)])
# these come from the SciPy cookbook:
setup(name='rebin', version='1.0',
description = 'a package providing the rebin "resampling function',
py_modules=['rebin'], cmdclass={'build_py':build_py}, )
setup(name='DataFrame', version='1.0',
description = 'a package providing R-like data.frame functionality',
py_modules=['DataFrame'], cmdclass={'build_py':build_py} )
# these depend on numpy:
if has_numpy:
setup(name='sincos', version='1.0',
description = 'a package providing a sincos function',
ext_modules = [Extension('sincos',
sources=['sincos.c','mips_sincos.c','cephes_sincos.c'],
depends=['sse_mathfun/sse_mathfun.h'],
include_dirs = [numpy_get_include()],
extra_compile_args =['-g','-msse2','-faltivec','-DHAVE_VECLIB','-framework','Accelerate'],
extra_link_args =['-g','-msse2','-faltivec','-framework','Accelerate']
)])
setup(name='rjvbFilt', version='1.0',
description = 'a package providing some filtring functions',
ext_modules = [Extension('rjvbFilt',
sources=['rjvbFilters.cpp','rjvbFilt.c'],
depends=['ParsedSequence.h','rjvbFilters.c','rjvbFilters.h'],
include_dirs = [numpy_get_include()],
extra_compile_args =['-g','-msse2','-faltivec','-framework','macstl','-UNDEBUG'],
extra_link_args =['-g','-msse2','-faltivec']
)])
setup(name='fmadd', version='1.0',
description = 'a package providing an fmadd function',
ext_modules = [Extension('fmadd',
sources=['fmadd.cpp'],
depends=['fmadd.c'],
extra_compile_args =['-g','-msse2','-faltivec','-UNDEBUG'],
include_dirs = [numpy_get_include()]
)])
def __init__(self):
compile_args = "@CYTHON_BINDINGS_COMPILE_DEFINITIONS@"
self.compile_args = [
"-D" + x for x in compile_args.split(';') if len(x)
]
self.compile_args = list(set(self.compile_args))
include_dirs = "@CYTHON_BINDINGS_INCLUDE_DIRECTORIES@"
include_dirs += ';{}'.format(numpy_get_include())
self.include_dirs = [x for x in include_dirs.split(';') if len(x)]
self.include_dirs.append('@CMAKE_CURRENT_SOURCE_DIR@/include')
self.include_dirs = list(set(self.include_dirs))
library_dirs = "@CYTHON_BINDINGS_LINK_FLAGS@"
self.library_dirs = [x for x in library_dirs.split(';') if len(x)]
self.libraries = [
re.sub("^lib", "", get_lib_name(l))
for l in "@CYTHON_BINDINGS_LIBRARIES@".split(";") if len(l)
]
self.libraries = list(set(self.libraries))
self.library_dirs += [
os.path.dirname(l)
for l in "@CYTHON_BINDINGS_TARGET_FILES@".split(';') if len(l)
]
self.library_dirs = list(set(self.library_dirs))
self.link_args = []
if linux_build:
for l in self.libraries:
self.link_args += ['-Wl,--no-as-needed', '-l{}'.format(l)]
self.libraries = []
if not win32_build:
self.extra_objects = [
l for l in '@CYTHON_BINDINGS_STATIC_LIBRARIES@'.split(';')
if len(l)
]
else:
self.extra_objects = []
def __init__(self):
compile_args = "@CYTHON_BINDINGS_COMPILE_DEFINITIONS@"
self.compile_args = [
"-D" + x for x in compile_args.split(';') if len(x)
]
self.compile_args = list(set(self.compile_args))
include_dirs = "@CYTHON_BINDINGS_INCLUDE_DIRECTORIES@"
include_dirs += ';{}'.format(numpy_get_include())
self.include_dirs = [x for x in include_dirs.split(';') if len(x)]
self.include_dirs.append('@CMAKE_CURRENT_SOURCE_DIR@/include')
self.include_dirs = list(set(self.include_dirs))
library_dirs = "@CYTHON_BINDINGS_LINK_FLAGS@"
self.library_dirs = [x for x in library_dirs.split(';') if len(x)]
self.libraries = [
re.sub("^lib", "",
os.path.splitext(os.path.basename(l))[0])
for l in "@CYTHON_BINDINGS_LIBRARIES@".split(";") if len(l)
]
self.libraries = list(set(self.libraries))
self.library_dirs += [
os.path.dirname(l)
for l in "@CYTHON_BINDINGS_TARGET_FILES@".split(';') if len(l)
]
self.library_dirs = list(set(self.library_dirs))
self.link_args = []
def def_ext_modules(self):
# Overloading compilers.
os.environ["CXX"] = "c++"
os.environ["CC"] = "gcc"
BITPIT_ENABLE_MPI = 0
include_libs = "-I" + self.PABLO_include_path
include_libs = include_libs + " -I" + self.IO_include_path
if ((not (not self.mpi_include_path)) and (ENABLE_MPI4PY)):
BITPIT_ENABLE_MPI = 1
include_libs = include_libs + " -I" + self.mpi_include_path
os.environ["CXX"] = "mpic++"
os.environ["CC"] = "mpicc"
_extra_compile_args = [
"-std=c++11", "-O3", "-fPIC", include_libs,
"-DBITPIT_ENABLE_MPI=" + str(BITPIT_ENABLE_MPI)
]
_extra_link_args = ["-fPIC"
] # Needed? We have already the same flag for
# the compiler args above.
_cython_directives = {
"boundscheck": False,
"wraparound": False,
# http://stackoverflow.com/questions/23351813/how-to-declare-an-ndarray-in-cython-with-a-general-floating-point-type
"nonecheck": False
}
_language = "c++"
_extra_objects = ["libbitpit_MPI.a" if (BITPIT_ENABLE_MPI) \
else "libbitpit.a"]
src_dir = os.path.dirname(self.IO_include_path.rstrip("/"))
common_dir = src_dir + "/common/"
operators_dir = src_dir + "/operators/"
containers_dir = src_dir + "/containers/"
_include_dirs = [
".", self.PABLO_include_path, self.IO_include_path, common_dir,
operators_dir, containers_dir,
numpy_get_include()
]
# Cython compile time environment.
_cc_time_env = {"BITPIT_ENABLE_MPI": BITPIT_ENABLE_MPI}
ext_modules = [
Extension(
os.path.splitext(self.extensions_source)[0],
[self.extensions_source],
extra_compile_args=_extra_compile_args,
extra_link_args=_extra_link_args,
cython_directives=_cython_directives,
language=_language,
extra_objects=_extra_objects,
include_dirs=_include_dirs,
cython_compile_time_env=_cc_time_env,
)
]
#return cythonize(ext_modules)
return ext_modules
def _extension_named(name):
return Extension(
f"cnn.{name}",
[f"src/cnn/{name}.pyx"],
define_macros=[("NPY_NO_DEPRECATED_API", None)],
include_dirs=[numpy_get_include(),],
#language='c++',
)
def doall():
setup(name='HRTime', version='1.0',
description = 'a package providing access to the high resolution timer',
ext_modules = [Extension('HRTime',
sources=['HRTime.c'],
libraries=['rt'],
)])
setup(name='rtsched', version='1.0',
description = 'a package providing (limited) real-time processing/priority functionality',
ext_modules = [Extension('rtsched',
sources=['rtsched/rtsched.c'],
)])
# these come from the SciPy cookbook:
setup(name='rebin', version='1.0',
description = 'a package providing the rebin "resampling function',
py_modules=['rebin'], cmdclass={'build_py':build_py}, )
setup(name='DataFrame', version='1.0',
description = 'a package providing R-like data.frame functionality',
py_modules=['DataFrame'], cmdclass={'build_py':build_py} )
# these depend on numpy:
setup(name='rjvbFilt', version='1.0',
description = 'a package providing some filtring functions',
ext_modules = [Extension('rjvbFilt',
sources=['rjvbFilt.c','rjvbFilters.c'],
depends=['ParsedSequence.h'],
include_dirs = [numpy_get_include()],
extra_compile_args =['-mfpmath=sse','-msse','-msse2','-msse3','-msse4','-ftree-vectorize']
)])
setup(name='sincos', version='1.0',
description = 'a package providing a sincos function',
ext_modules = [Extension('sincos',
sources=['sincos.c','mips_sincos.c','cephes_sincos.c'],
include_dirs = [numpy_get_include()],
extra_compile_args =['-mfpmath=sse','-msse','-msse2','-msse3','-msse4','-ftree-vectorize']
)])
setup(name='fmadd', version='1.0',
description = 'a package providing an fmadd function',
ext_modules = [Extension('fmadd',
sources=['fmadd.c'],
include_dirs = [numpy_get_include()]
)])
def main():
if float(sys.version[:3])<2.7 or float(sys.version[:3])>=2.8:
sys.stderr.write("CRITICAL: Python version must be 2.7!\n")
sys.exit(1)
ext_modules = [Extension("MACS2.cProb", ["MACS2/cProb.c"], libraries=["m"], include_dirs=numpy_include_dir ),
Extension("MACS2.IO.cParser",["MACS2/IO/cParser.c"], include_dirs=numpy_include_dir),
Extension("MACS2.cPileup", ["MACS2/cPileup.c"], include_dirs=numpy_include_dir ),
Extension("MACS2.cArray", ["MACS2/cArray.c"]),
Extension("MACS2.cPeakModel", ["MACS2/cPeakModel.c"], include_dirs=numpy_include_dir),
Extension("MACS2.cPeakDetect", ["MACS2/cPeakDetect.c"]),
Extension("MACS2.cSignal", ["MACS2/cSignal.c"], include_dirs=numpy_include_dir),
Extension("MACS2.IO.cPeakIO", ["MACS2/IO/cPeakIO.c"],),
Extension("MACS2.IO.cBedGraphIO", ["MACS2/IO/cBedGraphIO.c"],),
Extension("MACS2.IO.cFixWidthTrack", ["MACS2/IO/cFixWidthTrack.c"], include_dirs=numpy_include_dir),
Extension("MACS2.IO.cPairedEndTrack", ["MACS2/IO/cPairedEndTrack.c"], include_dirs=numpy_include_dir),
Extension("MACS2.IO.cBedGraph", ["MACS2/IO/cBedGraph.c"], libraries=["m"]),
Extension("MACS2.IO.cScoreTrack", ["MACS2/IO/cScoreTrack.c"], include_dirs=numpy_include_dir ),
Extension("MACS2.IO.cCompositeScoreTrack", ["MACS2/IO/cCompositeScoreTrack.c"],),
Extension("MACS2.hashtable", ["MACS2/hashtable.c"],
include_dirs=["MACS2/",numpy_get_include()]),
]
setup(name="MACS2",
version="2.0.10.09132012",
description="Model Based Analysis for ChIP-Seq data",
author='Tao Liu',
author_email='*****@*****.**',
url='http://github.com/taoliu/MACS/',
package_dir={'MACS2' : 'MACS2'},
packages=['MACS2', 'MACS2.IO'],#, 'MACS2.data'],
#package_data={'MACS2': ['data/*.dat']},
scripts=['bin/macs2',
],
classifiers=[
'Development Status :: 4 - Beta',
'Environment :: Console',
'Intended Audience :: Developers',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: Artistic License',
'Operating System :: MacOS :: MacOS X',
'Operating System :: POSIX',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'Programming Language :: Python',
],
install_requires=[
'numpy>=1.6',
],
cmdclass = command_classes,
ext_modules = ext_modules
)
def GenExtension(
name,
pkg,
):
pyx_src = name.replace('.', '/')
pyx_src = pyx_src + '.pyx'
ext_src = pyx_src
if pkg.found:
return Extension(name, [ext_src],
extra_compile_args=pkg.compile_args,
include_dirs=pkg.include_dirs + [numpy_get_include()],
library_dirs=pkg.library_dirs,
libraries=pkg.libraries)
else:
print("Failed to find {}".format(pkg.name))
return None
#
# This script can be run using the following command:
#
# python setup_cython.py build_ext --inplace
#
from distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext
from numpy import get_include as numpy_get_include
numpy_includes = numpy_get_include()
ext_modules = [
Extension("nuc_dynamics.dyn_util", ["nuc_dynamics/dyn_util.pyx"],
libraries=["m"],
include_dirs=[numpy_includes])
]
setup(name='NucDynamics Cython utilities',
cmdclass={'build_ext': build_ext},
ext_modules=ext_modules)
def GenExtension(name, pkg, ):
pyx_src = name.replace('.', '/')
pyx_src = pyx_src + '.pyx'
ext_src = pyx_src
if pkg.found:
return Extension(name, [ext_src], extra_compile_args = pkg.compile_args, include_dirs = pkg.include_dirs + [numpy_get_include()], library_dirs = pkg.library_dirs, libraries = pkg.libraries)
else:
print("Failed to find {}".format(pkg.name))
return None
## Copyright (C) 2012 Max-Planck-Society
## Author: Marco Selig
from distutils.core import setup
from distutils.extension import Extension as extension
from Cython.Distutils import build_ext
from numpy import get_include as numpy_get_include
srcs = ["wrapper.pyx",
"interfacer.cpp"]
libs = ["sharp",
"fftpack",
'c_utils']
idirs = [numpy_get_include(),
"../libsharp-code/c_utils",
"../libsharp-code/libfftpack",
"../libsharp-code/libsharp"]
ldirs = ["../libsharp-code/auto/lib"]
exmod = [extension("libsharp_wrapper_gl",
srcs,
language="c++",
include_dirs=idirs,
library_dirs=ldirs,
libraries=libs)]
setup(name="libsharp_wrapper_gl",
version="0.1",
def def_ext_modules(self):
# Define \"Extension\" being cythonized.
# Overloading compilers.
os.environ["CXX"] = "c++"
os.environ["CC"] = "gcc"
BITPIT_ENABLE_MPI = 0
include_paths = [
self.bitpit_path + "/include/bitpit/",
self.madeleine_path + "../../src/"
]
mpi_lib = ""
if ((not (not self.mpi_include_path)) and (ENABLE_MPI4PY)):
BITPIT_ENABLE_MPI = 1
include_paths.append(self.mpi_include_path)
os.environ["CXX"] = "mpic++"
os.environ["CC"] = "mpicc"
mpi_lib = "/usr/local/openmpi-1.10.5_intel/lib/libmpi.so"
mpi_lib = "/usr/lib64/openmpi-1.10/lib/libmpi.so"
_extra_compile_args = [
"-std=c++11",
"-g",
"-O0",
"-fPIC",
#include_paths,
"-DBITPIT_ENABLE_MPI=" + str(BITPIT_ENABLE_MPI)
]
_extra_link_args = ["-fPIC"
] # Needed? We have already the same flag for
# the compiler args above.
_cython_directives = {
"boundscheck": False,
"wraparound": False,
# http://stackoverflow.com/questions/23351813/how-to-declare-an-ndarray-in-cython-with-a-general-floating-point-type
"nonecheck": False
}
_language = "c++"
bitpit_lib = self.bitpit_path + "/lib/"
if (BITPIT_ENABLE_MPI):
bitpit_lib = bitpit_lib + "libbitpit_MPI_D.so"
else:
bitpit_lib = bitpit_lib + "libbitpit_D.so"
madeleine_lib = self.madeleine_path + "libmadeleine.so"
_extra_objects = [mpi_lib, bitpit_lib, madeleine_lib, "-lxml2"]
##FINO QUI!
#print(os.path.dirname(self.bitpit_include_path))
#piercedVector_subdir = os.path.dirname(self.bitpit_include_path) + "/containers/"
_include_dirs = [".", numpy_get_include()]
_include_dirs.extend(include_paths)
# Cython compile time environment.
_cc_time_env = {"BITPIT_ENABLE_MPI": BITPIT_ENABLE_MPI}
ext_modules = [
Extension(
os.path.splitext(self.extensions_source)[0],
[self.extensions_source],
extra_compile_args=_extra_compile_args,
extra_link_args=_extra_link_args,
cython_directives=_cython_directives,
language=_language,
extra_objects=_extra_objects,
include_dirs=_include_dirs,
cython_compile_time_env=_cc_time_env,
)
]
return cythonize(ext_modules, gdb_debug=True)
def main():
if float(sys.version[:3])<2.7 or float(sys.version[:3])>=2.8:
sys.stderr.write("CRITICAL: Python version must be 2.7!\n")
sys.exit(1)
# I intend to use -Ofast, however if gcc version < 4.6, this option is unavailable so...
extra_c_args = ["-w","-O3","-ffast-math"] # for C, -Ofast implies -O3 and -ffast-math
ext_modules = [Extension("MACS2.Prob", ["MACS2/Prob.c"], libraries=["m"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args ),
Extension("MACS2.IO.Parser",["MACS2/IO/Parser.c"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args),
Extension("MACS2.Pileup", ["MACS2/Pileup.c","MACS2/cPosValCalculation.c"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args ),
Extension("MACS2.PeakModel", ["MACS2/PeakModel.c"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args),
Extension("MACS2.PeakDetect", ["MACS2/PeakDetect.c"], extra_compile_args=extra_c_args),
Extension("MACS2.Signal", ["MACS2/Signal.c"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args),
Extension("MACS2.IO.PeakIO", ["MACS2/IO/PeakIO.c"], extra_compile_args=extra_c_args),
Extension("MACS2.IO.BedGraphIO", ["MACS2/IO/BedGraphIO.c"], extra_compile_args=extra_c_args),
Extension("MACS2.IO.FixWidthTrack", ["MACS2/IO/FixWidthTrack.c"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args),
Extension("MACS2.IO.PairedEndTrack", ["MACS2/IO/PairedEndTrack.c"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args),
Extension("MACS2.IO.BedGraph", ["MACS2/IO/BedGraph.c"], libraries=["m"], extra_compile_args=extra_c_args),
Extension("MACS2.IO.ScoreTrack", ["MACS2/IO/ScoreTrack.c"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args ),
Extension("MACS2.IO.CallPeakUnit", ["MACS2/IO/CallPeakUnit.c"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args),
Extension("MACS2.hashtable", ["MACS2/hashtable.c"], include_dirs=["MACS2/",numpy_get_include()], extra_compile_args=extra_c_args),
Extension("MACS2.Statistics", ["MACS2/Statistics.c", "MACS2/cStatistics.c"], libraries=["m"], include_dirs=["MACS2/",numpy_get_include()], extra_compile_args=extra_c_args),
]
setup(name="MACS2",
version="2.1.1.20160226",
description="Model Based Analysis for ChIP-Seq data",
author='Tao Liu',
author_email='*****@*****.**',
url='http://github.com/taoliu/MACS/',
package_dir={'MACS2' : 'MACS2'},
packages=['MACS2', 'MACS2.IO'],#, 'MACS2.data'],
#package_data={'MACS2': ['data/*.dat']},
scripts=['bin/macs2',
],
classifiers=[
'Development Status :: 4 - Beta',
'Environment :: Console',
'Intended Audience :: Developers',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: BSD License',
'Operating System :: MacOS :: MacOS X',
'Operating System :: POSIX',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'Programming Language :: Python',
],
install_requires=[
'numpy>=1.6',
#'scipy',
],
cmdclass = command_classes,
ext_modules = ext_modules
)
extra_compile_args.append('-Wno-shift-negative-value')
extra_compile_args.append('-Wno-parentheses-equality')
extra_compile_args.append('-Wno-deprecated-declarations')
else:
# Remove the "-Wstrict-prototypes" compiler option that swig adds, which isn't valid for C++.
cfg_vars = sysconfig.get_config_vars()
for key, value in cfg_vars.items():
if type(value) == str:
cfg_vars[key] = value.replace("-Wstrict-prototypes", "")
extra_compile_args.append('-Wno-maybe-uninitialized')
# the libgip.so module containing all the C++ code
gip_module = Extension(
name=os.path.join("gippy", "libgip"),
sources=glob.glob('GIP/*.cpp'),
include_dirs=['GIP', numpy_get_include()] + gdal_config.include,
library_dirs=lib_dirs,
libraries=[
'pthread'
] + gdal_config.libs,
extra_compile_args=extra_compile_args,
extra_link_args=extra_link_args
)
# the swig .so modules containing the C++ code that wraps libgip.so
swig_modules = []
for n in ['gippy', 'algorithms']:
src = os.path.join('gippy', n + '.i')
cppsrc = os.path.join('gippy', n + '_wrap.cpp')
src = cppsrc if os.path.exists(cppsrc) else src
swig_modules.append(
from distutils.core import setup
from distutils.extension import Extension
from distutils.sysconfig import get_python_inc
from Cython.Distutils import build_ext
from numpy import get_include as numpy_get_include
ext_modules = [Extension("_regions", ["src/_regions.pyx"],
include_dirs = [numpy_get_include()])]
setup(
name = '_regions',
cmdclass = {'build_ext': build_ext},
ext_modules = ext_modules
)
from distutils.core import setup, Extension
try:
from numpy import get_include as numpy_get_include
numpy_includes=numpy_get_include()
del numpy_get_include
except:
print("falling back to hardcoded numpy header directory")
numpy_includes='/usr/lib/python3.2/site-packages/numpy/core/include'
try:
from distutils.command.build_py import build_py_2to3 as build_py
except ImportError:
from distutils.command.build_py import build_py
def doall():
setup(name='HRTime', version='1.0',
description = 'a package providing access to the high resolution timer',
ext_modules = [Extension('HRTime',
sources=['HRTime.c'],
)])
setup(name='rtsched', version='1.0',
description = 'a package providing (limited) real-time processing/priority functionality',
ext_modules = [Extension('rtsched',
sources=['rtsched/rtsched.c'],
)])
# these come from the SciPy cookbook:
# setup(name='rebin', version='1.0',
# description = 'a package providing the rebin "resampling function',
# py_modules=['rebin'], cmdclass={'build_py':build_py}, )
@status: beta @version: $Revision$ @author: Tao Liu @contact: [email protected] """ import os import sys from setuptools import setup, Extension # Use build_ext from Cython if found command_classes = {} try: from numpy import get_include as numpy_get_include numpy_include_dir = [numpy_get_include()] except: numpy_include_dir = [] sys.stderr.write("CRITICAL:Numpy must be installed!\n") sys.exit(1) def main(): if float(sys.version[:3]) < 2.7 or float(sys.version[:3]) >= 2.8: sys.stderr.write("CRITICAL: Python version must be 2.7!\n") sys.exit(1) ext_modules = [ Extension("MACS2.cProb", ["MACS2/cProb.c"], libraries=["m"], include_dirs=numpy_include_dir,
def main():
if float(sys.version[:3])<2.7 or float(sys.version[:3])>=2.8:
sys.stderr.write("CRITICAL: Python version must be 2.7!\n")
sys.exit(1)
if has_cython:
ext_modules = [Extension("MACS2.cProb", ["MACS2/cProb.pyx"], libraries=["m"]),
Extension("MACS2.IO.cParser",["MACS2/IO/cParser.pyx"]),
Extension("MACS2.cPileup", ["MACS2/cPileup.pyx"], include_dirs=numpy_include_dir ),
Extension("MACS2.cArray", ["MACS2/cArray.pyx"]),
Extension("MACS2.cPeakModel", ["MACS2/cPeakModel.pyx"], include_dirs=numpy_include_dir),
Extension("MACS2.cPeakDetect", ["MACS2/cPeakDetect.pyx"]),
Extension("MACS2.IO.cPeakIO", ["MACS2/IO/cPeakIO.pyx"],),
Extension("MACS2.IO.cBedGraphIO", ["MACS2/IO/cBedGraphIO.pyx"],),
Extension("MACS2.IO.cFixWidthTrack", ["MACS2/IO/cFixWidthTrack.pyx"], include_dirs=numpy_include_dir),
Extension("MACS2.IO.cBedGraph", ["MACS2/IO/cBedGraph.pyx"], libraries=["m"]),
Extension("MACS2.IO.cScoreTrack", ["MACS2/IO/cScoreTrack.pyx"], include_dirs=numpy_include_dir ),
Extension("MACS2.IO.cCompositeScoreTrack", ["MACS2/IO/cCompositeScoreTrack.pyx"],),
Extension("MACS2.hashtable", ["MACS2/hashtable.pyx"],include_dirs=["MACS2/",numpy_get_include()]),
]
else:
ext_modules = [Extension("MACS2.cProb", ["MACS2/cProb.c"], libraries=["m"]),
Extension("MACS2.IO.cParser",["MACS2/IO/cParser.c"]),
Extension("MACS2.cPileup", ["MACS2/cPileup.c"], include_dirs=numpy_include_dir),
Extension("MACS2.cArray", ["MACS2/cArray.c"]),
Extension("MACS2.cPeakModel", ["MACS2/cPeakModel.c"], include_dirs=numpy_include_dir),
Extension("MACS2.cPeakDetect", ["MACS2/cPeakDetect.c"]),
Extension("MACS2.IO.cPeakIO", ["MACS2/IO/cPeakIO.c"],),
Extension("MACS2.IO.cBedGraphIO", ["MACS2/IO/cBedGraphIO.c"],),
Extension("MACS2.IO.cFixWidthTrack", ["MACS2/IO/cFixWidthTrack.c"], include_dirs=numpy_include_dir),
Extension("MACS2.IO.cBedGraph", ["MACS2/IO/cBedGraph.c"], libraries=["m"]),
Extension("MACS2.IO.cScoreTrack", ["MACS2/IO/cScoreTrack.c"], include_dirs=numpy_include_dir),
Extension("MACS2.IO.cCompositeScoreTrack", ["MACS2/IO/cCompositeScoreTrack.c"],),
Extension("MACS2.hashtable", ["MACS2/hashtable.c"],include_dirs=["MACS2/",numpy_get_include()]),
]
setup(name="MACS",
version="2.0.10",
description="Model Based Analysis for ChIP-Seq data",
author='Tao Liu',
author_email='*****@*****.**',
url='http://github.com/taoliu/MACS/',
package_dir={'MACS2' : 'MACS2'},
packages=['MACS2', 'MACS2.IO', 'MACS2.data'],
package_data={'MACS2': ['data/*.dat']},
scripts=['bin/macs2',
'bin/MLEPostPoisRatios',
'bin/MCMCPostPoisRatios',
],
classifiers=[
'Development Status :: 4 - experimental',
'Environment :: Console',
'Intended Audience :: Developers',
'License :: OSI Approved :: Artistic License',
'Operating System :: MacOS :: MacOS X',
'Operating System :: Microsoft :: Windows',
'Operating System :: POSIX',
'Programming Language :: Python',
],
cmdclass = command_classes,
ext_modules = ext_modules
)
extra_compile_args.append('-Wno-absolute-value')
extra_compile_args.append('-Wno-shift-negative-value')
extra_compile_args.append('-Wno-parentheses-equality')
extra_compile_args.append('-Wno-deprecated-declarations')
else:
# Remove the "-Wstrict-prototypes" compiler option that swig adds, which isn't valid for C++.
cfg_vars = sysconfig.get_config_vars()
for key, value in cfg_vars.items():
if type(value) == str:
cfg_vars[key] = value.replace("-Wstrict-prototypes", "")
extra_compile_args.append('-Wno-maybe-uninitialized')
# the libgip.so module containing all the C++ code
gip_module = Extension(name=os.path.join("gippy", "libgip"),
sources=glob.glob('GIP/*.cpp'),
include_dirs=['GIP', numpy_get_include()] +
gdal_config.include,
library_dirs=lib_dirs,
libraries=['pthread'] + gdal_config.libs,
extra_compile_args=extra_compile_args,
extra_link_args=extra_link_args)
# the swig .so modules containing the C++ code that wraps libgip.so
swig_modules = []
for n in ['gippy', 'algorithms']:
src = os.path.join('gippy', n + '.i')
cppsrc = os.path.join('gippy', n + '_wrap.cpp')
src = cppsrc if os.path.exists(cppsrc) else src
swig_modules.append(
Extension(name=os.path.join('gippy', '_' + n),
sources=[src],
def GenExtension(name):
pyx_src = name.replace('.', '/')
pyx_src = pyx_src + '.pyx'
ext_src = pyx_src
return Extension(name, [ext_src], extra_compile_args = config.compile_args, include_dirs = config.include_dirs + [numpy_get_include()], library_dirs = config.library_dirs, libraries = config.libraries, extra_link_args = config.link_args)
def main():
if float(sys.version[:3])<3.6:
sys.stderr.write("CRITICAL: Python version must >= 3.6!\n")
sys.exit(1)
cwd = os.path.abspath(os.path.dirname(__file__))
# install required numpy
p = subprocess.call([sys.executable, "-m", 'pip', 'install', f'numpy{numpy_requires}'],cwd=cwd)
if p != 0:
# Could be due to a too old pip version and build isolation, check that
try:
# Note, pip may not be installed or not have been used
import pip
if LooseVersion(pip.__version__) < LooseVersion('18.0.0'):
raise RuntimeError("Installing requirements failed. Possibly due "
"to `pip` being too old, found version {}, "
"needed is >= 18.0.0.".format(pip.__version__))
else:
raise RuntimeError("Installing requirements failed!")
except ImportError:
raise RuntimeError("Installing requirement failed! `pip` has to be installed!")
from numpy import get_include as numpy_get_include
numpy_include_dir = [numpy_get_include()]
# I intend to use -Ofast, however if gcc version < 4.6, this option is unavailable so...
extra_c_args = ["-w","-O3","-ffast-math","-g0"] # for C, -Ofast implies -O3 and -ffast-math
ext_modules = [Extension("MACS2.Prob", ["MACS2/Prob.pyx"], libraries=["m"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args ),
Extension("MACS2.IO.Parser",["MACS2/IO/Parser.pyx"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args),
Extension("MACS2.Pileup", ["MACS2/Pileup.pyx","MACS2/cPosValCalculation.c"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args ),
Extension("MACS2.PeakModel", ["MACS2/PeakModel.pyx"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args),
Extension("MACS2.PeakDetect", ["MACS2/PeakDetect.pyx"], extra_compile_args=extra_c_args),
Extension("MACS2.Signal", ["MACS2/Signal.pyx"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args),
Extension("MACS2.IO.PeakIO", ["MACS2/IO/PeakIO.pyx"], extra_compile_args=extra_c_args),
Extension("MACS2.IO.BedGraphIO", ["MACS2/IO/BedGraphIO.pyx"], extra_compile_args=extra_c_args),
Extension("MACS2.IO.FixWidthTrack", ["MACS2/IO/FixWidthTrack.pyx"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args),
Extension("MACS2.IO.PairedEndTrack", ["MACS2/IO/PairedEndTrack.pyx"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args),
Extension("MACS2.IO.BedGraph", ["MACS2/IO/BedGraph.pyx"], libraries=["m"], extra_compile_args=extra_c_args),
Extension("MACS2.IO.ScoreTrack", ["MACS2/IO/ScoreTrack.pyx"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args ),
Extension("MACS2.IO.CallPeakUnit", ["MACS2/IO/CallPeakUnit.pyx"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args),
#Extension("MACS2.Statistics", ["MACS2/Statistics.pyx"], libraries=["m"], include_dirs=["MACS2/",numpy_get_include()], extra_compile_args=extra_c_args),
]
with open("README.md", "r") as fh:
long_description = fh.read()
setup(name="MACS2",
version="2.2.7.1",
description="Model Based Analysis for ChIP-Seq data",
long_description = long_description,
long_description_content_type="text/markdown",
author='Tao Liu',
author_email='*****@*****.**',
url='http://github.com/taoliu/MACS/',
package_dir={'MACS2' : 'MACS2'},
packages=['MACS2', 'MACS2.IO'],
package_data={'MACS2':['*.pxd']},
scripts=['bin/macs2', ],
classifiers=[
'Development Status :: 5 - Production/Stable',
'Environment :: Console',
'Intended Audience :: Developers',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: BSD License',
'Operating System :: MacOS :: MacOS X',
'Operating System :: POSIX',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'Programming Language :: Python :: 3.6',
'Programming Language :: Python :: 3.7',
'Programming Language :: Python :: 3.8',
'Programming Language :: Cython',
],
install_requires=install_requires,
setup_requires=install_requires,
python_requires='>=3.6',
ext_modules = ext_modules
)
@status: beta @version: $Revision$ @author: Tao Liu @contact: [email protected] """ import os import sys from distutils.core import setup, Extension # Use build_ext from Cython if found command_classes = {} try: from numpy import get_include as numpy_get_include numpy_include_dir = [numpy_get_include()] except: numpy_include_dir = [] sys.stderr.write("CRITICAL:Numpy must be installed!\n") sys.exit(1) def main(): if float(sys.version[:3])<2.7 or float(sys.version[:3])>=2.8: sys.stderr.write("CRITICAL: Python version must be 2.7!\n") sys.exit(1) ext_modules = [Extension("MACS2.cProb", ["MACS2/cProb.c"], libraries=["m"], include_dirs=numpy_include_dir ), Extension("MACS2.IO.cParser",["MACS2/IO/cParser.c"], include_dirs=numpy_include_dir), Extension("MACS2.cPileup", ["MACS2/cPileup.c"], include_dirs=numpy_include_dir ), Extension("MACS2.cArray", ["MACS2/cArray.c"]), Extension("MACS2.cPeakModel", ["MACS2/cPeakModel.c"], include_dirs=numpy_include_dir),
def main():
if float(sys.version[:3]) < 2.7 or float(sys.version[:3]) >= 2.8:
sys.stderr.write("CRITICAL: Python version must be 2.7!\n")
sys.exit(1)
# I intend to use -Ofast, however if gcc version < 4.6, this option is unavailable so...
extra_c_args = ["-w", "-O3",
"-ffast-math"] # for C, -Ofast implies -O3 and -ffast-math
if has_cython:
ext_modules = [
Extension("MACS2.Prob", ["MACS2/Prob.pyx"],
libraries=["m"],
include_dirs=numpy_include_dir,
extra_compile_args=extra_c_args),
Extension("MACS2.IO.Parser", ["MACS2/IO/Parser.pyx"],
include_dirs=numpy_include_dir,
extra_compile_args=extra_c_args),
Extension("MACS2.Pileup", [
"MACS2/Pileup.pyx", "MACS2/cPosValCalculation.pxd",
"MACS2/cPosValCalculation.c"
],
include_dirs=numpy_include_dir,
extra_compile_args=extra_c_args),
Extension("MACS2.PeakModel", ["MACS2/PeakModel.pyx"],
include_dirs=numpy_include_dir,
extra_compile_args=extra_c_args),
Extension("MACS2.PeakDetect", ["MACS2/PeakDetect.pyx"],
extra_compile_args=extra_c_args),
Extension("MACS2.Signal", ["MACS2/Signal.pyx"],
include_dirs=numpy_include_dir,
extra_compile_args=extra_c_args),
Extension("MACS2.IO.PeakIO", ["MACS2/IO/PeakIO.pyx"],
extra_compile_args=extra_c_args),
Extension("MACS2.IO.BedGraphIO", ["MACS2/IO/BedGraphIO.pyx"],
extra_compile_args=extra_c_args),
Extension("MACS2.IO.FixWidthTrack", ["MACS2/IO/FixWidthTrack.pyx"],
include_dirs=numpy_include_dir,
extra_compile_args=extra_c_args),
Extension("MACS2.IO.PairedEndTrack",
["MACS2/IO/PairedEndTrack.pyx"],
include_dirs=numpy_include_dir,
extra_compile_args=extra_c_args),
Extension("MACS2.IO.BedGraph", ["MACS2/IO/BedGraph.pyx"],
libraries=["m"],
extra_compile_args=extra_c_args),
Extension("MACS2.IO.ScoreTrack", ["MACS2/IO/ScoreTrack.pyx"],
include_dirs=numpy_include_dir,
extra_compile_args=extra_c_args),
Extension("MACS2.IO.CallPeakUnit", ["MACS2/IO/CallPeakUnit.pyx"],
include_dirs=numpy_include_dir,
extra_compile_args=extra_c_args),
Extension("MACS2.hashtable", ["MACS2/hashtable.pyx"],
include_dirs=["MACS2/", numpy_get_include()],
extra_compile_args=extra_c_args),
Extension("MACS2.Statistics", ["MACS2/Statistics.pyx"],
libraries=["m"],
include_dirs=["MACS2/", numpy_get_include()],
extra_compile_args=extra_c_args),
]
else:
ext_modules = [
Extension("MACS2.Prob", ["MACS2/Prob.c"],
libraries=["m"],
include_dirs=numpy_include_dir,
extra_compile_args=extra_c_args),
Extension("MACS2.IO.Parser", ["MACS2/IO/Parser.c"],
include_dirs=numpy_include_dir,
extra_compile_args=extra_c_args),
Extension("MACS2.Pileup",
["MACS2/Pileup.c", "MACS2/cPosValCalculation.c"],
include_dirs=numpy_include_dir,
extra_compile_args=extra_c_args),
Extension("MACS2.PeakModel", ["MACS2/PeakModel.c"],
include_dirs=numpy_include_dir,
extra_compile_args=extra_c_args),
Extension("MACS2.PeakDetect", ["MACS2/PeakDetect.c"],
extra_compile_args=extra_c_args),
Extension("MACS2.Signal", ["MACS2/Signal.c"],
include_dirs=numpy_include_dir,
extra_compile_args=extra_c_args),
Extension("MACS2.IO.PeakIO", ["MACS2/IO/PeakIO.c"],
extra_compile_args=extra_c_args),
Extension("MACS2.IO.BedGraphIO", ["MACS2/IO/BedGraphIO.c"],
extra_compile_args=extra_c_args),
Extension("MACS2.IO.FixWidthTrack", ["MACS2/IO/FixWidthTrack.c"],
include_dirs=numpy_include_dir,
extra_compile_args=extra_c_args),
Extension("MACS2.IO.PairedEndTrack", ["MACS2/IO/PairedEndTrack.c"],
include_dirs=numpy_include_dir,
extra_compile_args=extra_c_args),
Extension("MACS2.IO.BedGraph", ["MACS2/IO/BedGraph.c"],
libraries=["m"],
extra_compile_args=extra_c_args),
Extension("MACS2.IO.ScoreTrack", ["MACS2/IO/ScoreTrack.c"],
include_dirs=numpy_include_dir,
extra_compile_args=extra_c_args),
Extension("MACS2.IO.CallPeakUnit", ["MACS2/IO/CallPeakUnit.c"],
include_dirs=numpy_include_dir,
extra_compile_args=extra_c_args),
Extension("MACS2.hashtable", ["MACS2/hashtable.c"],
include_dirs=["MACS2/", numpy_get_include()],
extra_compile_args=extra_c_args),
Extension("MACS2.Statistics",
["MACS2/Statistics.c", "MACS2/cStatistics.c"],
libraries=["m"],
include_dirs=["MACS2/", numpy_get_include()],
extra_compile_args=extra_c_args),
]
with open("README.md", "r") as fh:
long_description = fh.read()
setup(
name="MACS2",
version="2.1.3",
description="Model Based Analysis for ChIP-Seq data",
long_description=long_description,
long_description_content_type="text/markdown",
author='Tao Liu',
author_email='*****@*****.**',
url='http://github.com/taoliu/MACS/',
package_dir={'MACS2': 'MACS2'},
packages=['MACS2', 'MACS2.IO', 'MACS2.data'],
#package_data={'MACS2': ['data/*.dat']},
scripts=[
'bin/macs2',
],
classifiers=[
'Development Status :: 5 - Production/Stable',
'Environment :: Console',
'Intended Audience :: Developers',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: BSD License',
'Operating System :: MacOS :: MacOS X',
'Operating System :: POSIX',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'Programming Language :: Python :: 2 :: Only',
'Programming Language :: Cython',
],
install_requires=[
'numpy>=1.15',
'cython>=0.25',
#'scipy',
],
cmdclass=command_classes,
ext_modules=cythonize(ext_modules, language_level="2"))
def main():
if float(sys.version[:3]) < 2.7 or float(sys.version[:3]) >= 2.8:
sys.stderr.write("CRITICAL: Python version must be 2.7!\n")
sys.exit(1)
ext_modules = [
Extension("MACS2.cProb", ["MACS2/cProb.c"],
libraries=["m"],
include_dirs=numpy_include_dir,
extra_compile_args=["-w", "-Ofast"]),
Extension("MACS2.IO.cParser", ["MACS2/IO/cParser.c"],
include_dirs=numpy_include_dir,
extra_compile_args=["-w", "-Ofast"]),
Extension("MACS2.cPileup", ["MACS2/cPileup.c"],
include_dirs=numpy_include_dir,
extra_compile_args=["-w", "-Ofast"]),
Extension("MACS2.cArray", ["MACS2/cArray.c"],
extra_compile_args=["-w", "-Ofast"]),
Extension("MACS2.cPeakModel", ["MACS2/cPeakModel.c"],
include_dirs=numpy_include_dir,
extra_compile_args=["-w", "-Ofast"]),
Extension("MACS2.cPeakDetect", ["MACS2/cPeakDetect.c"],
extra_compile_args=["-w", "-Ofast"]),
Extension("MACS2.cSignal", ["MACS2/cSignal.c"],
include_dirs=numpy_include_dir,
extra_compile_args=["-w", "-Ofast"]),
Extension("MACS2.IO.cPeakIO", ["MACS2/IO/cPeakIO.c"],
extra_compile_args=["-w", "-Ofast"]),
Extension("MACS2.IO.cBedGraphIO", ["MACS2/IO/cBedGraphIO.c"],
extra_compile_args=["-w", "-Ofast"]),
Extension("MACS2.IO.cFixWidthTrack", ["MACS2/IO/cFixWidthTrack.c"],
include_dirs=numpy_include_dir,
extra_compile_args=["-w", "-Ofast"]),
Extension("MACS2.IO.cPairedEndTrack", ["MACS2/IO/cPairedEndTrack.c"],
include_dirs=numpy_include_dir,
extra_compile_args=["-w", "-Ofast"]),
Extension("MACS2.IO.cBedGraph", ["MACS2/IO/cBedGraph.c"],
libraries=["m"],
extra_compile_args=["-w", "-Ofast"]),
Extension("MACS2.IO.cScoreTrack", ["MACS2/IO/cScoreTrack.c"],
include_dirs=numpy_include_dir,
extra_compile_args=["-w", "-Ofast"]),
Extension("MACS2.IO.cCallPeakUnit", ["MACS2/IO/cCallPeakUnit.c"],
include_dirs=numpy_include_dir,
extra_compile_args=["-w", "-Ofast"]),
Extension("MACS2.hashtable", ["MACS2/hashtable.c"],
include_dirs=["MACS2/", numpy_get_include()],
extra_compile_args=["-w", "-Ofast"]),
Extension("MACS2.Statistics",
["MACS2/Statistics.c", "MACS2/cStatistics.c"],
libraries=["m"],
include_dirs=["MACS2/", numpy_get_include()],
extra_compile_args=["-w", "-Ofast"]),
]
setup(
name="MACS2",
version="2.1.0.20141030",
description="Model Based Analysis for ChIP-Seq data",
author='Tao Liu',
author_email='*****@*****.**',
url='http://github.com/taoliu/MACS/',
package_dir={'MACS2': 'MACS2'},
packages=['MACS2', 'MACS2.IO'], #, 'MACS2.data'],
#package_data={'MACS2': ['data/*.dat']},
scripts=[
'bin/macs2',
],
classifiers=[
'Development Status :: 4 - Beta',
'Environment :: Console',
'Intended Audience :: Developers',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: BSD License',
'Operating System :: MacOS :: MacOS X',
'Operating System :: POSIX',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'Programming Language :: Python',
],
install_requires=[
'numpy>=1.6',
#'scipy',
],
cmdclass=command_classes,
ext_modules=ext_modules)
## Max-Planck-Institute for Astrophysics.
##
## Copyright (C) 2012 Max-Planck-Society
## Author: Marco Selig
from distutils.core import setup
from distutils.extension import Extension as extension
from Cython.Distutils import build_ext
from numpy import get_include as numpy_get_include
srcs = ["wrapper.pyx", "interfacer.cpp"]
libs = ["sharp", "fftpack", 'c_utils']
idirs = [
numpy_get_include(), "../libsharp-code/c_utils",
"../libsharp-code/libfftpack", "../libsharp-code/libsharp"
]
ldirs = ["../libsharp-code/auto/lib"]
exmod = [
extension("libsharp_wrapper_gl",
srcs,
language="c++",
include_dirs=idirs,
library_dirs=ldirs,
libraries=libs)
]
setup(name="libsharp_wrapper_gl",
