def test_fill_matrix():
nussinov = Nussinov()
sequence = "GGUCCAC"
d = [[Cell(i, j) for j in range(len(sequence) + 1)] for i in range(len(sequence) + 1)]
nussinov.fill_matrix(d, sequence)
import os
from nussinov import Nussinov
from utils import FastaReader, pairs2parentheses, print_matrix
if __name__ == "__main__":
nus = Nussinov()
#seq = "ACCAGCU"
seq = "GCGCUCUGAUGAGGCCGCAAGGCCGAAACUGCCGCAAGGCAGUCAGCGC"
nus.seq = seq
nus.fill_matrix()
print_matrix(nus.V_matrix, seq=seq)
pairs = nus.get_pairs()
print(pairs)
print(seq)
parentheses = pairs2parentheses(pairs, len(seq))
print(parentheses)
print(parentheses.count("("))
