def test_single_trace_widget(self):
single_wd = SeparateTracesPlotlyWidget(timeseries=self.ts_multi)
tt = get_timeseries_tt(self.ts_multi)
single_wd.controls["time_window"].value = [
tt[int(len(tt) * 0.2)],
tt[int(len(tt) * 0.4)],
]
def test_show_spatial_series_over_time(self):
SeparateTracesPlotlyWidget(self.spatial_series)
def test_show_spatial_series_over_time_threeD(self):
widget = SeparateTracesPlotlyWidget(self.spatial_series)
widget.controls["time_window"].value = [2.0 / 50, 10.0 / 50]
def tab_stream(self, nwb_file):
position_keys = list(nwb_file.processing["behavior"].
data_interfaces["Position"].spatial_series.keys())
spatial_series = nwb_file.processing["behavior"].data_interfaces[
"Position"][position_keys[0]]
tt = get_timeseries_tt(spatial_series,
istart=spatial_series.starting_time)
time_trace_window_controller = StartAndDurationController(tmax=tt[-1],
tmin=tt[0],
start=0,
duration=5)
reach_arm = (nwb_file.processing["behavior"].
data_interfaces["ReachEvents"].description)
reach_arm = map(lambda x: x.capitalize(), reach_arm.split("_"))
reach_arm = list(reach_arm)
reach_arm = "_".join(reach_arm)
jointpos_widget = SeparateTracesPlotlyWidget(
nwb_file.processing["behavior"].data_interfaces["Position"]
[reach_arm],
foreign_time_window_controller=time_trace_window_controller,
)
text = "(b) Movement segments"
jointpos_label = widgets.HTML(value=f"<b><font size=4>{text}</b>")
jointpos = widgets.VBox([jointpos_label, jointpos_widget],
layout=self.box_layout)
skeleton_widget = SkeletonPlot(
nwb_file.processing["behavior"].data_interfaces["Position"],
foreign_time_window_controller=time_trace_window_controller,
)
text = "(a) Tracked joints"
skeleton_label = widgets.HTML(value=f"<b><font size=4>{text}</b>")
skeleton = widgets.VBox([skeleton_label, skeleton_widget],
layout=self.box_layout)
ecog_widget = ElectricalSeriesWidget(
nwb_file.acquisition["ElectricalSeries"],
foreign_time_window_controller=time_trace_window_controller,
)
text = "(d) Raw ECoG"
ecog_label = widgets.HTML(value=f"<b><font size=4>{text}</b>")
ecog = widgets.VBox([ecog_label, ecog_widget], layout=self.box_layout)
brain_widget = HumanElectrodesPlotlyWidget(nwb_file.electrodes)
text = "(c) Subject electrode locations"
brain_label = widgets.HTML(value=f"<b><font size=4>{text}</b>")
brain = widgets.VBox([brain_label, brain_widget],
layout=self.box_layout)
tab1_hbox_header = widgets.HBox([time_trace_window_controller])
tab1_row1_widgets = widgets.HBox(
[skeleton, jointpos],
layout=self.row_layout,
)
tab1_row2_widgets = widgets.HBox(
[brain, ecog],
layout=self.row_layout,
)
tab1 = widgets.VBox(
[tab1_hbox_header, tab1_row1_widgets, tab1_row2_widgets])
return tab1