コード例 #1
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 def test_get_between_use_bounds(self):
     value = [3., 5.]
     bounds = [[2., 4.], [4., 6.]]
     vdim = VectorDimension(value=value, bounds=bounds)
     ret = vdim.get_between(3, 4.5, use_bounds=False)
     self.assertNumpyAll(ret.value, np.array([3.]))
     self.assertNumpyAll(ret.bounds, np.array([[2., 4.]]))
コード例 #2
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    def test_value(self):
        vdim = VectorDimension(value=[4, 5, 6])
        self.assertIsInstance(vdim.value, np.ndarray)

        # Test passing a single value.
        values = [5, np.array([5])]
        for value in values:
            vdim = VectorDimension(value=value, src_idx=10)
            self.assertEqual(vdim.value[0], 5)
            self.assertEqual(vdim.uid[0], 1)
            self.assertEqual(len(vdim.uid), 1)
            self.assertEqual(vdim.shape, (1,))
            self.assertIsNone(vdim.bounds)
            self.assertEqual(vdim[0].value[0], 5)
            self.assertEqual(vdim[0].uid[0], 1)
            self.assertEqual(vdim[0]._src_idx[0], 10)
            self.assertIsNone(vdim[0].bounds)
            with self.assertRaises(ResolutionError):
                vdim.resolution

        # Test conforming units.
        for seb in [True, False]:
            if seb:
                v = VectorDimension(value=[4, 5, 6], units='celsius', conform_units_to='kelvin')
                v.set_extrapolated_bounds()
            else:
                v = VectorDimension(value=[4, 5, 6], bounds=[[3.5, 4.5], [4.5, 5.5], [5.5, 6.5]], units='celsius',
                                    conform_units_to='kelvin')
            self.assertGreater(v.value.mean(), 200)
            self.assertGreater(v.bounds.mean(), 200)

        # Test with a request dataset, conforming units, and no initial value.
        v = VectorDimension(conform_units_to='kelvin', units='celsius', request_dataset='foo')
        self.assertIsNone(v._value)
コード例 #3
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 def test_write_netcdf_unlimited_to_fixedsize(self):
     v = VectorDimension(value=[1, 2, 3], name='foo', unlimited=True)
     path = self.get_temporary_file_path('foobar.nc')
     with self.nc_scope(path, 'w') as ds:
         v.write_netcdf(ds, unlimited_to_fixedsize=True)
     with self.nc_scope(path) as ds:
         d = ds.dimensions['foo']
         self.assertFalse(d.isunlimited())
コード例 #4
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ファイル: test_base.py プロジェクト: UV-CDAT/ocgis
 def test_get_between(self):
     vdim = VectorDimension(value=[0])
     with self.assertRaises(EmptySubsetError):
         vdim.get_between(100,200)
     
     vdim = VectorDimension(value=[100,200,300,400])
     vdim_between = vdim.get_between(100,200)
     self.assertEqual(len(vdim_between),2)
コード例 #5
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ファイル: test_base.py プロジェクト: UV-CDAT/ocgis
 def test_get_between_bounds(self):
     vdim = VectorDimension(value=[0.,5.,10.],bounds=[[-2.5,2.5],[2.5,7.5],[7.5,12.5]])
     vdim_between = vdim.get_between(1,3)
     self.assertEqual(len(vdim_between),2)
     self.assertEqual(vdim.resolution,5.0)
     
     vdim_between = vdim.get_between(2.5,2.5)
     self.assertEqual(len(vdim_between),2)
コード例 #6
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    def test_interpolate_bounds(self):
        value = [10, 20, 30, 40, 50]

        vdim = VectorDimension(value=value)
        self.assertEqual(vdim.bounds, None)

        vdim = VectorDimension(value=value)
        vdim.set_extrapolated_bounds()
        self.assertEqual(vdim.bounds.tostring(),
                         '\x05\x00\x00\x00\x00\x00\x00\x00\x0f\x00\x00\x00\x00\x00\x00\x00\x0f\x00\x00\x00\x00\x00\x00\x00\x19\x00\x00\x00\x00\x00\x00\x00\x19\x00\x00\x00\x00\x00\x00\x00#\x00\x00\x00\x00\x00\x00\x00#\x00\x00\x00\x00\x00\x00\x00-\x00\x00\x00\x00\x00\x00\x00-\x00\x00\x00\x00\x00\x00\x007\x00\x00\x00\x00\x00\x00\x00')
コード例 #7
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    def test_write_netcdf_bounds_dimension_exists(self):
        """Test writing with bounds when the bounds dimension has already been created."""

        vd = VectorDimension(value=[3., 7.], name='one')
        vd.set_extrapolated_bounds()
        vd2 = VectorDimension(value=[5., 6.], name='two')
        vd2.set_extrapolated_bounds()
        path = os.path.join(self.current_dir_output, 'foo.nc')
        with nc_scope(path, 'w') as ds:
            vd.write_netcdf(ds)
            vd2.write_netcdf(ds)
            self.assertEqual(ds.variables.keys(), ['one', 'one_bounds', 'two', 'two_bounds'])
コード例 #8
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ファイル: test_base.py プロジェクト: UV-CDAT/ocgis
 def test_set_reference(self):
     vdim = VectorDimension(value=[4,5,6])
     vdim_slc = vdim[1]
     self.assertEqual(vdim_slc.uid[0],2)
     vdim_slc2 = vdim[:]
     self.assertNumpyAll(vdim_slc2.value,vdim.value)
     vdim._value[1] = 500
     self.assertNumpyAll(vdim.value,[4,500,6])
     with self.assertRaises(TypeError):
         vdim.bounds[1,:]
     self.assertNumpyAll(vdim.value,vdim_slc2.value)
     vdim_slc2._value[2] = 1000
     self.assertNumpyAll(vdim.value,vdim_slc2.value)
コード例 #9
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def create_data():
    col = np.linspace(-104., -100., 100)
    row = np.linspace(32, 36, 100)

    col = VectorDimension(value=col, name='longitude', name_bounds='longitude_bounds', attrs={'standard_name': 'longitude',
                                                                                              'units': 'degrees_east'})
    col.set_extrapolated_bounds()
    row = VectorDimension(value=row, name='latitude', name_bounds='latitude_bounds', attrs={'standard_name': 'latitude',
                                                                                            'units': 'degrees_north'})
    row.set_extrapolated_bounds()
    grid = ocgis.SpatialGridDimension(row=row, col=col)
    sdim = ocgis.SpatialDimension(grid=grid)

    start = datetime.datetime(2000, 1, 1)
    stop = datetime.datetime(2000, 12, 31)
    days = 1
    ret = []
    delta = datetime.timedelta(days=days)
    check = start
    while check <= stop:
        ret.append(check)
        check += delta
    temporal = ocgis.TemporalDimension(value=ret, unlimited=True)

    var_value = np.ones((1, temporal.shape[0], 1, row.shape[0], col.shape[0]), dtype=float)
    variable = ocgis.Variable(value=var_value, name='pr')

    field = ocgis.Field(spatial=sdim, temporal=temporal, variables=variable)

    ds = nc.Dataset(PATH_FAKE_DATA, 'w', format='NETCDF3_CLASSIC')
    field.write_netcdf(ds)
    ds.close()
コード例 #10
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    def test_set_reference(self):
        """Test setting values on the internal value array using indexing."""

        vdim = VectorDimension(value=[4, 5, 6])
        vdim_slc = vdim[1]
        self.assertEqual(vdim_slc.uid[0], 2)
        vdim_slc2 = vdim[:]
        self.assertNumpyAll(vdim_slc2.value, vdim.value)
        vdim._value[1] = 500
        self.assertNumpyAll(vdim.value, np.array([4, 500, 6]))
        with self.assertRaises(TypeError):
            vdim.bounds[1, :]
        self.assertNumpyAll(vdim.value, vdim_slc2.value)
        vdim_slc2._value[2] = 1000
        self.assertNumpyAll(vdim.value, vdim_slc2.value)
コード例 #11
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 def test_get_report(self):
     keywords = dict(value=[[10, 20, 30, 40, 50]],
                     name=['vdim_test', None],
                     use_bounds=[True, False])
     for k in self.iter_product_keywords(keywords):
         kwds = k._asdict()
         use_bounds = kwds.pop('use_bounds')
         vdim = VectorDimension(**kwds)
         if use_bounds:
             vdim.set_extrapolated_bounds()
         target = vdim.get_report()
         self.assertEqual(len(target), 4)
         if use_bounds:
             actual = 'True'
         else:
             actual = 'False'
         self.assertTrue(target[-2].endswith(actual))
コード例 #12
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    def test_cfunits_conform(self):
        vdim = VectorDimension(value=[5., 10., 15.], units='celsius')
        vdim.set_extrapolated_bounds()
        vdim.cfunits_conform(get_units_object('kelvin'))
        self.assertNumpyAll(vdim.bounds, np.array([[275.65, 280.65], [280.65, 285.65], [285.65, 290.65]]))

        # Test conforming without bounds.
        vdim = VectorDimension(value=[5., 10., 15.], units='celsius')
        vdim.cfunits_conform('kelvin')
        self.assertNumpyAll(vdim.value, np.array([278.15, 283.15, 288.15]))
コード例 #13
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ファイル: test_base.py プロジェクト: NCPP/ocgis
    def get_spherical_global_grid(self, resolution=3.0, with_bounds=True, wrapped=False):
        # Column (longitude) coordinates.
        if wrapped:
            start = -180.0 + (0.5 * resolution)
            stop = 180.0 + (0.5 * resolution)
        else:
            start = 0.5 * resolution
            stop = 360.0 + (0.5 * resolution)
        col = np.arange(start, stop, resolution)

        # Row (latitude) coordinates.
        start = -90.0 + (0.5 * resolution)
        stop = 90.0 + (0.5 * resolution)
        row = np.arange(start, stop, resolution)
        # The origin should be the upper left.
        row = np.flipud(row)

        col = VectorDimension(name="col", value=col)
        row = VectorDimension(name="row", value=row)

        if with_bounds:
            col.set_extrapolated_bounds()
            row.set_extrapolated_bounds()

        grid = SpatialGridDimension(row=row, col=col)

        return grid
コード例 #14
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ファイル: base.py プロジェクト: NCPP/ocgis
    def get_field(self, nlevel=None, nrlz=None, crs=None, ntime=2, with_bounds=False):
        """
        :param int nlevel: The number of level elements.
        :param int nrlz: The number of realization elements.
        :param crs: The coordinate system for the field.
        :type crs: :class:`ocgis.interface.base.crs.CoordinateReferenceSystem`
        :param ntime: The number of time elements.
        :type ntime: int
        :param with_bounds: If ``True``, extrapolate bounds on spatial dimensions.
        :type with_bounds: bool
        :returns: A small field object for testing.
        :rtype: `~ocgis.Field`
        """

        np.random.seed(1)
        row = VectorDimension(value=[4.0, 5.0], name="row")
        col = VectorDimension(value=[40.0, 50.0], name="col")

        if with_bounds:
            row.set_extrapolated_bounds()
            col.set_extrapolated_bounds()

        grid = SpatialGridDimension(row=row, col=col)
        sdim = SpatialDimension(grid=grid, crs=crs)

        if ntime == 2:
            value_temporal = [datetime.datetime(2000, 1, 1), datetime.datetime(2000, 2, 1)]
        else:
            value_temporal = []
            start = datetime.datetime(2000, 1, 1)
            delta = datetime.timedelta(days=1)
            ctr = 0
            while ctr < ntime:
                value_temporal.append(start)
                start += delta
                ctr += 1
        temporal = TemporalDimension(value=value_temporal)

        if nlevel is None:
            nlevel = 1
            level = None
        else:
            level = VectorDimension(value=range(1, nlevel + 1), name="level")

        if nrlz is None:
            nrlz = 1
            realization = None
        else:
            realization = VectorDimension(value=range(1, nrlz + 1), name="realization")

        variable = Variable(name="foo", value=np.random.rand(nrlz, ntime, nlevel, 2, 2))
        field = Field(spatial=sdim, temporal=temporal, variables=variable, level=level, realization=realization)

        return field
コード例 #15
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ファイル: test_base.py プロジェクト: UV-CDAT/ocgis
 def test_get_iter(self):
     vdim = VectorDimension(value=[10,20,30,40,50])
     with self.assertRaises(ValueError):
         list(vdim.get_iter())
         
     vdim = VectorDimension(value=[10,20,30,40,50],name='foo')
     tt = list(vdim.get_iter())
     self.assertEqual(tt[3],(3, {'foo_uid': 4, 'foo': 40, 'foo_bnds_lower': None, 'foo_bnds_upper': None}))
     
     vdim = VectorDimension(value=[10,20,30,40,50],bounds=[(ii-5,ii+5) for ii in [10,20,30,40,50]],name='foo',name_uid='hi')
     tt = list(vdim.get_iter())
     self.assertEqual(tt[3],(3, {'hi': 4, 'foo': 40, 'foo_bnds_lower': 35, 'foo_bnds_upper': 45}))
コード例 #16
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    def test_get_iter(self):
        vdim = VectorDimension(value=[10, 20, 30, 40, 50])
        with self.assertRaises(ValueError):
            list(vdim.get_iter())

        vdim = VectorDimension(value=[10, 20, 30, 40, 50], name='foo')
        tt = list(vdim.get_iter())
        self.assertEqual(tt[3], (3, {'foo_uid': 4, 'foo': 40, 'lb_foo': None, 'ub_foo': None}))
        self.assertIsInstance(tt[0][1], OrderedDict)

        vdim = VectorDimension(value=[10, 20, 30, 40, 50], bounds=[(ii - 5, ii + 5) for ii in [10, 20, 30, 40, 50]],
                               name='foo', name_uid='hi')
        tt = list(vdim.get_iter())
        self.assertEqual(tt[3], (3, {'hi': 4, 'foo': 40, 'lb_foo': 35, 'ub_foo': 45}))

        vdim = VectorDimension(value=[4, 5, 6, 7, 8, 9, 10], name='new')
        for slc, row in vdim.get_iter(with_bounds=False):
            for k in row.iterkeys():
                self.assertFalse(OCGIS_BOUNDS in k)
コード例 #17
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    def test_set_extrapolated_bounds(self):
        value = np.array([1, 2, 3, 4], dtype=float)
        vd = VectorDimension(value=value)
        self.assertIsNone(vd.bounds)
        vd.set_extrapolated_bounds()
        actual = np.array([[0.5, 1.5], [1.5, 2.5], [2.5, 3.5], [3.5, 4.5]], dtype=float)
        self.assertNumpyAll(vd.bounds, actual)

        # attempt to extrapolate when the bound are already present
        value = np.array([1.5])
        bounds = np.array([[1.0, 2.0]])
        vd = VectorDimension(value=value, bounds=bounds)
        with self.assertRaises(BoundsAlreadyAvailableError):
            vd.set_extrapolated_bounds()
コード例 #18
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ファイル: test_base.py プロジェクト: HydroLogic/ocgis
    def test_get_between_bounds(self):
        value = [0., 5., 10.]
        bounds = [[-2.5, 2.5], [2.5, 7.5], [7.5, 12.5]]

        # # a reversed copy of these bounds are created here
        value_reverse = deepcopy(value)
        value_reverse.reverse()
        bounds_reverse = deepcopy(bounds)
        bounds_reverse.reverse()
        for ii in range(len(bounds)):
            bounds_reverse[ii].reverse()

        data = {'original': {'value': value, 'bounds': bounds},
                'reversed': {'value': value_reverse, 'bounds': bounds_reverse}}
        for key in ['original', 'reversed']:
            vdim = VectorDimension(value=data[key]['value'],
                                   bounds=data[key]['bounds'])

            vdim_between = vdim.get_between(1, 3)
            self.assertEqual(len(vdim_between), 2)
            if key == 'original':
                self.assertEqual(vdim_between.bounds.tostring(),
                                 '\x00\x00\x00\x00\x00\x00\x04\xc0\x00\x00\x00\x00\x00\x00\x04@\x00\x00\x00\x00\x00\x00\x04@\x00\x00\x00\x00\x00\x00\x1e@')
            else:
                self.assertEqual(vdim_between.bounds.tostring(),
                                 '\x00\x00\x00\x00\x00\x00\x1e@\x00\x00\x00\x00\x00\x00\x04@\x00\x00\x00\x00\x00\x00\x04@\x00\x00\x00\x00\x00\x00\x04\xc0')
            self.assertEqual(vdim.resolution, 5.0)

            ## preference is given to the lower bound in the case of "ties" where
            ## the value could be assumed part of the lower or upper cell
            vdim_between = vdim.get_between(2.5, 2.5)
            self.assertEqual(len(vdim_between), 1)
            if key == 'original':
                self.assertNumpyAll(vdim_between.bounds, np.array([[2.5, 7.5]]))
            else:
                self.assertNumpyAll(vdim_between.bounds, np.array([[7.5, 2.5]]))

            ## if the interval is closed and the subset range falls only on bounds
            ## value then the subset will be empty
            with self.assertRaises(EmptySubsetError):
                vdim.get_between(2.5, 2.5, closed=True)

            vdim_between = vdim.get_between(2.5, 7.5)
            if key == 'original':
                self.assertEqual(vdim_between.bounds.tostring(),
                                 '\x00\x00\x00\x00\x00\x00\x04@\x00\x00\x00\x00\x00\x00\x1e@\x00\x00\x00\x00\x00\x00\x1e@\x00\x00\x00\x00\x00\x00)@')
            else:
                self.assertEqual(vdim_between.bounds.tostring(),
                                 '\x00\x00\x00\x00\x00\x00)@\x00\x00\x00\x00\x00\x00\x1e@\x00\x00\x00\x00\x00\x00\x1e@\x00\x00\x00\x00\x00\x00\x04@')
コード例 #19
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ファイル: test_base.py プロジェクト: HydroLogic/ocgis
 def test_with_units(self):
     vdim = VectorDimension(value=[5, 10, 15], units='celsius')
     self.assertEqual(vdim.cfunits, Units('celsius'))
     vdim.cfunits_conform(Units('kelvin'))
     self.assertNumpyAll(vdim.value, np.array([278.15, 283.15, 288.15]))
コード例 #20
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ファイル: test_crs.py プロジェクト: HydroLogic/ocgis
    def test_get_wrapped_state(self):
        refv = WrappableCoordinateReferenceSystem
        refm = refv.get_wrapped_state

        ## test grid ##

        row = VectorDimension(value=[50, 60])

        col = VectorDimension(value=[0, 90, 180])
        grid = SpatialGridDimension(row=row, col=col)
        sdim = SpatialDimension(grid=grid)
        self.assertEqual(refm(sdim), refv._flag_unknown)

        col = VectorDimension(value=[-170, 0, 30])
        grid = SpatialGridDimension(row=row, col=col)
        sdim = SpatialDimension(grid=grid)
        self.assertEqual(refm(sdim), refv._flag_wrapped)

        col = VectorDimension(value=[0, 90, 180, 270])
        grid = SpatialGridDimension(row=row, col=col)
        sdim = SpatialDimension(grid=grid)
        self.assertEqual(refm(sdim), refv._flag_unwrapped)

        ## test geom ##

        for with_polygon in [True, False]:
            row = VectorDimension(value=[50, 60])
            col = VectorDimension(value=[155, 165, 175])
            if with_polygon:
                row.set_extrapolated_bounds()
                col.set_extrapolated_bounds()
            grid = SpatialGridDimension(row=row, col=col)
            sdim = SpatialDimension(grid=grid)
            sdim.grid = None
            self.assertEqual(refm(sdim), refv._flag_unknown)

            row = VectorDimension(value=[50, 60])
            col = VectorDimension(value=[160, 170, 180])
            if with_polygon:
                row.set_extrapolated_bounds()
                col.set_extrapolated_bounds()
            grid = SpatialGridDimension(row=row, col=col)
            sdim = SpatialDimension(grid=grid)
            sdim.grid = None
            if with_polygon:
                actual = refv._flag_unwrapped
            else:
                actual = refv._flag_unknown
            self.assertEqual(refm(sdim), actual)

            row = VectorDimension(value=[50, 60])
            col = VectorDimension(value=[-160, -150, -140])
            if with_polygon:
                row.set_extrapolated_bounds()
                col.set_extrapolated_bounds()
            grid = SpatialGridDimension(row=row, col=col)
            sdim = SpatialDimension(grid=grid)
            sdim.grid = None
            self.assertEqual(refm(sdim), refv._flag_wrapped)
コード例 #21
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ファイル: test_base.py プロジェクト: NCPP/ocgis
    def test_get_ocgis_field_from_esmpy_field(self):
        np.random.seed(1)
        temporal = TemporalDimension(value=[3000.0, 4000.0, 5000.0])
        level = VectorDimension(value=[10, 20, 30, 40])
        realization = VectorDimension(value=[100, 200])

        kwds = dict(
            crs=[None, CoordinateReferenceSystem(epsg=4326), Spherical()],
            with_mask=[False, True],
            with_corners=[False, True],
            dimensions=[False, True],
            drealization=[False, True],
            dtemporal=[False, True],
            dlevel=[False, True],
        )

        for k in self.iter_product_keywords(kwds):
            row = VectorDimension(value=[1.0, 2.0])
            col = VectorDimension(value=[3.0, 4.0])
            if k.with_corners:
                row.set_extrapolated_bounds()
                col.set_extrapolated_bounds()

            value_tmin = np.random.rand(2, 3, 4, 2, 2)
            tmin = Variable(value=value_tmin, name="tmin")
            variables = VariableCollection([tmin])
            grid = SpatialGridDimension(row=row, col=col)
            sdim = SpatialDimension(grid=grid, crs=k.crs)
            field = Field(variables=variables, spatial=sdim, temporal=temporal, level=level, realization=realization)
            if k.with_mask:
                mask = np.zeros(value_tmin.shape[-2:], dtype=bool)
                mask[0, 1] = True
                set_new_value_mask_for_field(field, mask)
                sdim.set_mask(mask)
                self.assertTrue(tmin.value.mask.any())
                self.assertTrue(sdim.get_mask().any())
            else:
                self.assertFalse(tmin.value.mask.any())
                self.assertFalse(sdim.get_mask().any())
            coll = SpatialCollection()
            coll[1] = {field.name: field}
            conv = ESMPyConverter([coll])
            efield = conv.write()

            if k.dimensions:
                dimensions = {}
                if k.drealization:
                    dimensions["realization"] = realization
                if k.dtemporal:
                    dimensions["temporal"] = temporal
                if k.dlevel:
                    dimensions["level"] = level
            else:
                dimensions = None

            ofield = get_ocgis_field_from_esmf_field(efield, crs=k.crs, dimensions=dimensions)

            self.assertIsInstance(ofield, Field)
            self.assertEqual(ofield.shape, efield.data.shape)

            # Test a default CRS is applied for the spherical case.
            if k.crs is None:
                self.assertEqual(ofield.spatial.crs, Spherical())

            if k.drealization and k.dimensions:
                target = realization.value
            else:
                target = np.array([1, 2])
            self.assertNumpyAll(ofield.realization.value, target)

            if k.dtemporal and k.dimensions:
                target = temporal.value
            else:
                target = np.array([1, 1, 1])
                with self.assertRaises(CannotFormatTimeError):
                    ofield.temporal.value_datetime
                self.assertFalse(ofield.temporal.format_time)
            self.assertNumpyAll(ofield.temporal.value, target)

            if k.dlevel and k.dimensions:
                target = level.value
            else:
                target = np.array([1, 2, 3, 4])
            self.assertNumpyAll(ofield.level.value, target)

            self.assertNumpyAll(field.spatial.grid.value, ofield.spatial.grid.value)
            if k.with_corners:
                self.assertIsNotNone(ofield.spatial.grid.corners)
                self.assertNumpyAll(field.spatial.grid.corners, ofield.spatial.grid.corners)

            try:
                self.assertEqual(ofield.spatial.crs, sdim.crs)
            except AssertionError:
                # A "None" "crs" argument results in a default coordinate system applied to the output OCGIS field.
                self.assertIsNone(k.crs)

            ofield_tmin_value = ofield.variables[efield.name].value
            for arr1, arr2 in itertools.combinations([tmin.value.data, efield.data, ofield_tmin_value.data], r=2):
                self.assertNumpyAll(arr1, arr2, check_arr_type=False)

            rows = list(ofield.get_iter())
            try:
                self.assertEqual(len(rows), len(value_tmin.flatten()))
            except AssertionError:
                self.assertTrue(k.with_mask)
                self.assertEqual(len(rows), len(tmin.value.compressed()))

            self.assertTrue(np.may_share_memory(ofield_tmin_value, efield.data))
            self.assertFalse(np.may_share_memory(ofield_tmin_value, tmin.value))
コード例 #22
0
    def test_write_netcdf(self):
        path = os.path.join(self.current_dir_output, 'foo.nc')

        other_bounds_name = 'bnds'
        keywords = dict(with_bounds=[True, False],
                        with_attrs=[True, False],
                        unlimited=[False, True],
                        kwargs=[{}, {'zlib': True}],
                        bounds_dimension_name=[None, other_bounds_name],
                        axis=[None, 'GG'],
                        name=[None, 'temporal'],
                        name_bounds=[None, 'time_bounds'],
                        name_value=[None, 'time'],
                        format=[None, 'NETCDF4_CLASSIC'])

        for k in itr_products_keywords(keywords, as_namedtuple=True):
            if k.with_attrs:
                attrs = {'a': 5, 'b': np.array([5, 6])}
            else:
                attrs = None
            vd = VectorDimension(value=[2., 4.], attrs=attrs, name=k.name, name_bounds=k.name_bounds,
                                 name_value=k.name_value, axis=k.axis, unlimited=k.unlimited)
            if k.with_bounds:
                vd.set_extrapolated_bounds()
            with nc_scope(path, 'w') as ds:
                try:
                    vd.write_netcdf(ds, bounds_dimension_name=k.bounds_dimension_name, **k.kwargs)
                except ValueError:
                    self.assertIsNone(vd.name)
                    continue

            with nc_scope(path, 'r') as ds:
                var = ds.variables[vd.name_value]

                if k.axis is None:
                    axis_actual = ''
                else:
                    axis_actual = vd.axis
                self.assertEqual(var.axis, axis_actual)

                try:
                    self.assertIn(constants.OCGIS_BOUNDS, ds.dimensions)
                except AssertionError:
                    try:
                        self.assertFalse(k.with_bounds)
                    except AssertionError:
                        try:
                            self.assertEqual(k.bounds_dimension_name, other_bounds_name)
                        except AssertionError:
                            self.assertIsNotNone(k.name_bounds_suffix)
                            self.assertIsNone(k.bounds_dimension_name)
                            self.assertIn(k.name_bounds_suffix, ds.variables[vd.name_bounds].dimensions)
                try:
                    self.assertFalse(ds.dimensions[vd.name].isunlimited())
                except AssertionError:
                    self.assertTrue(k.unlimited)

                try:
                    self.assertEqual(var.a, attrs['a'])
                    self.assertNumpyAll(var.b, attrs['b'])
                except AttributeError:
                    self.assertFalse(k.with_attrs)
                try:
                    self.assertEqual(var.bounds, vd.name_bounds)
                    self.assertNumpyAll(vd.bounds, ds.variables[vd.name_bounds][:])
                except (AttributeError, KeyError):
                    self.assertFalse(k.with_bounds)
                self.assertEqual(var._name, vd.name_value)
                self.assertEqual(var.dimensions, (vd.name,))
                self.assertNumpyAll(vd.value, var[:])
コード例 #23
0
 def test_units_with_bounds(self):
     value = [5., 10., 15.]
     vdim = VectorDimension(value=value, units='celsius',
                            bounds=get_bounds_from_1d(np.array(value)))
     vdim.cfunits_conform(get_units_object('kelvin'))
     self.assertNumpyAll(vdim.bounds, np.array([[275.65, 280.65], [280.65, 285.65], [285.65, 290.65]]))
コード例 #24
0
ファイル: test_base.py プロジェクト: HydroLogic/ocgis
 def test_with_units_and_bounds_interpolation(self):
     vdim = VectorDimension(value=[5., 10., 15.], units='celsius')
     vdim.set_extrapolated_bounds()
     vdim.cfunits_conform(Units('kelvin'))
     self.assertNumpyAll(vdim.bounds, np.array([[275.65, 280.65], [280.65, 285.65], [285.65, 290.65]]))
コード例 #25
0
 def test_remove_bounds(self):
     vd = VectorDimension(value=[1, 2, 3])
     vd.set_extrapolated_bounds()
     self.assertIsNotNone(vd.bounds)
     vd.remove_bounds()
     self.assertIsNone(vd.bounds)