コード例 #1
0
def uploadImage(path, gateway):
    
    user = gateway.getLoggedInUser()
        ctx = SecurityContext(user.getGroupId())
        sessionKey = gateway.getSessionId(user)
        
        config = ImportConfig()
        
        config.email.set("")
        config.sendFiles.set('true')
        config.sendReport.set('false')
        config.contOnError.set('false')
        config.debug.set('false')
        config.hostname.set(HOST)
        config.sessionKey.set(sessionKey)
        config.targetClass.set("omero.model.Dataset")
        config.targetId.set(datasetId)
        
        loci.common.DebugTools.enableLogging("DEBUG")
        
        store = config.createStore()
        reader = OMEROWrapper(config)
        
        library = ImportLibrary(store,reader)
        errorHandler = ErrorHandler(config)
        
        library.addObserver(LoggingImportMonitor())
        candidates = ImportCandidates (reader, path, errorHandler)
        reader.setMetadataOptions(DefaultMetadataOptions(MetadataLevel.ALL))
        success = library.importCandidates(config, candidates)
        return success
コード例 #2
0
def upload_image(gateway, path, host, dataset_id):

    user = gateway.getLoggedInUser()
    ctx = SecurityContext(user.getGroupId())
    session_key = gateway.getSessionId(user)
    
    str2d = Array.newInstance(String,[1])
    str2d[0] = path
    
    config = ImportConfig()

    config.email.set("")
    config.sendFiles.set('true')
    config.sendReport.set('false')
    config.contOnError.set('false')
    config.debug.set('false')
    config.hostname.set(host)
    config.sessionKey.set(session_key)
    config.targetClass.set("omero.model.Dataset")
    config.targetId.set(dataset_id)

    loci.common.DebugTools.enableLogging("DEBUG")

    store = config.createStore()
    reader = OMEROWrapper(config)

    library = ImportLibrary(store,reader)
    error_handler = ErrorHandler(config)

    library.addObserver(LoggingImportMonitor())
    candidates = ImportCandidates(reader, str2d, error_handler)
    reader.setMetadataOptions(DefaultMetadataOptions(MetadataLevel.ALL))
    print('Importing image: ' + str2d[0])
    success = library.importCandidates(config, candidates)
    return success