#
# To be run in OMERO CLI shell as follows:
#
# # Download script to current working directory
# omero shell --login
# ...
# %run -i rename-image.py image_id name
#
import sys
from omero.gateway import omero_type
try:
image_id, name = sys.argv[1:]
except ValueError:
print "Usage: %s <image_id> <name>"
sys.exit(1)
image_id = long(image_id)
session = client.getSession()
iquery = session.getQueryService()
iupdate = session.getUpdateService()
image = iquery.find('Image', image_id)
image.setName(omero_type(name))
iupdate.saveObject(image)
print 'Successfully set name of Image:%d to %r' % (image_id, name)
from omero.gateway import omero_type
try:
plate_id, name = sys.argv[1:]
except ValueError:
print "Usage: %s <plate_id> <name>"
sys.exit(1)
plate_id = long(plate_id)
session = client.getSession()
iquery = session.getQueryService()
iupdate = session.getUpdateService()
params = omero.sys.Parameters()
params.map = {"pid": omero_type(plate_id)}
query = """select image from Image image
join image.wellSamples as samples
join samples.well as well
join well.plate as plate
where plate.id=:pid"""
images = iquery.findAllByQuery(query, params)
for image in images:
image.setName(omero_type(name))
iupdate.saveObject(image)
print 'Successfully set name of %d images in Plate:%d to %r' % (
len(images), plate_id, name)
#
# # Download script to current working directory
# omero shell --login
# ...
# %run -i edit_plate.py plate_id attribute value
#
import sys
from omero.gateway import omero_type
try:
plate_id, attribute, value = sys.argv[1:]
except ValueError:
print "Usage: %s <plate_id> <attribute> <value>"
sys.exit(1)
plate_id = long(plate_id)
session = client.getSession()
iquery = session.getQueryService()
iupdate = session.getUpdateService()
plate = iquery.find('Plate', plate_id)
if not hasattr(plate, attribute):
print 'Plate has no attribute %r' % (attribute)
sys.exit(1)
setattr(plate, attribute, omero_type(value))
iupdate.saveObject(plate)
print 'Successfully set attribute %r of Plate:%d to %r' % \
(attribute, plate_id, value)