def addRoi(self, request, imageid):
img = self.getImage0(imageid)
if img is None:
return None
data = json.loads(request.body)
shapes = data['shapes']
x = y = l = z = t = -1
for s in shapes:
for k in s:
val = s[k]
if k == "x":
x = int(val)
elif k == "y":
y = int(val)
elif k == "width":
l = int(val)
elif k == "theZ":
z = int(val)
elif k == "theT":
t = int(val)
elif k == "fillColorAsInt":
fill = int(val)
elif k == "strokeColorAsInt":
stroke = int(val)
elif k == "strokeWidth":
strokeWidth = int(val)
if (x < 0 or y < 0 or z < 0 or t < 0 or l <= 0):
return None
updateService = self._connection.getUpdateService()
roi = RoiI()
roi.setImage(img._obj)
rect = RectangleI()
rect.x = rdouble(x)
rect.y = rdouble(y)
rect.width = rdouble(l)
rect.height = rdouble(l)
rect.theZ = rint(z)
rect.theT = rint(t)
rect.setFillColor(rint(fill))
strokeLen = LengthI()
strokeLen.setValue(strokeWidth)
strokeLen.setUnit(UnitsLength.PIXEL)
rect.setStrokeWidth(strokeLen)
rect.setStrokeColor(rint(stroke))
roi.addShape(rect)
if (updateService.saveAndReturnObject(roi) is None):
return None
return self.get_rois(imageid)
def addRoi(self, request, imageid):
img = self.getImage0(imageid)
if img is None:
return None
data = json.loads(request.body)
shapes = data['shapes']
x = y = l = z = t = -1
for s in shapes:
for k in s:
val = s[k]
if k == "x":
x = int(val)
elif k == "y":
y = int(val)
elif k == "width":
l = int(val)
elif k == "theZ":
z = int(val)
elif k == "theT":
t = int(val)
elif k == "fillColorAsInt":
fill = int(val)
elif k == "strokeColorAsInt":
stroke = int(val)
elif k == "strokeWidth":
strokeWidth = int(val)
if (x < 0 or y < 0 or z < 0 or t < 0 or l <= 0):
return None
updateService = self._connection.getUpdateService()
roi = RoiI()
roi.setImage(img._obj)
rect = RectangleI()
rect.x = rdouble(x)
rect.y = rdouble(y)
rect.width = rdouble(l)
rect.height = rdouble(l)
rect.theZ = rint(z)
rect.theT = rint(t)
rect.setFillColor(rint(fill))
strokeLen = LengthI()
strokeLen.setValue(strokeWidth)
strokeLen.setUnit(UnitsLength.PIXEL)
rect.setStrokeWidth(strokeLen)
rect.setStrokeColor(rint(stroke))
roi.addShape(rect)
if (updateService.saveAndReturnObject(roi) is None):
return None
return self.get_rois(imageid)
class ShapeSettingsData(object):
##
# Initialises the default values of the ShapeSettings.
# Stroke has default colour of darkGrey
# StrokeWidth defaults to 1
#
def __init__(self):
warnings.warn("This module is deprecated as of OMERO 5.3.0",
DeprecationWarning)
self.WHITE = 16777215
self.BLACK = 0
self.GREY = 11184810
self.strokeColour = rint(self.GREY)
self.strokeWidth = LengthI()
self.strokeWidth.setValue(1)
self.strokeWidth.setUnit(UnitsLength.POINT)
self.strokeDashArray = rstring('')
self.fillColour = rint(self.GREY)
self.fillRule = rstring('')
##
# Applies the settings in the ShapeSettingsData to the ROITypeI
# @param shape the omero.model.ROITypeI that these settings will
# be applied to
#
def setROIShapeSettings(self, shape):
warnings.warn("This module is deprecated as of OMERO 5.3.0",
DeprecationWarning)
shape.setStrokeColor(self.strokeColour)
shape.setStrokeWidth(self.strokeWidth)
shape.setStrokeDashArray(self.strokeDashArray)
shape.setFillColor(self.fillColour)
shape.setFillRule(self.fillRule)
##
# Set the Stroke settings of the ShapeSettings.
# @param colour The colour of the stroke.
# @param width The stroke width.
#
def setStrokeSettings(self, colour, width=1):
warnings.warn("This module is deprecated as of OMERO 5.3.0",
DeprecationWarning)
self.strokeColour = rint(colour)
self.strokeWidth = LengthI()
self.strokeWidth.setValue(width)
self.strokeWidth.setUnit(UnitsLength.POINT)
###
# Set the Fill Settings for the ShapeSettings.
# @param colour The fill colour of the shape.
def setFillSettings(self, colour):
warnings.warn("This module is deprecated as of OMERO 5.3.0",
DeprecationWarning)
self.fillColour = rstring(colour)
##
# Get the stroke settings as the tuple (strokeColour, strokeWidth).
# @return See above.
#
def getStrokeSettings(self):
warnings.warn("This module is deprecated as of OMERO 5.3.0",
DeprecationWarning)
return (self.strokeColour.getValue(), self.strokeWidth.getValue())
##
# Get the fill setting as a tuple of (fillColour)
# @return See above.
#
def getFillSettings(self):
warnings.warn("This module is deprecated as of OMERO 5.3.0",
DeprecationWarning)
return (self.fillColour.getValue())
##
# Get the tuple ((stokeColor, strokeWidth), (fillColour)).
# @return see above.
#
def getSettings(self):
warnings.warn("This module is deprecated as of OMERO 5.3.0",
DeprecationWarning)
return (self.getStrokeSettings(), self.getFillSettings())
##
# Set the current shapeSettings from the ROI roi.
# @param roi see above.
#
def getShapeSettingsFromROI(self, roi):
warnings.warn("This module is deprecated as of OMERO 5.3.0",
DeprecationWarning)
self.strokeColour = roi.getStrokeColor()
self.strokeWidth = roi.getStrokeWidth()
self.strokeDashArray = roi.getStrokeDashArray()
self.fillColour = roi.getFillColor()
self.fillRule = roi.getFillRule()
class ShapeSettingsData:
##
# Initialises the default values of the ShapeSettings.
# Stroke has default colour of darkGrey
# StrokeWidth defaults to 1
#
def __init__(self):
self.WHITE = 16777215
self.BLACK = 0
self.GREY = 11184810
self.strokeColour = rint(self.GREY)
self.strokeWidth = LengthI()
self.strokeWidth.setValue(1)
self.strokeWidth.setUnit(UnitsLength.POINT)
self.strokeDashArray = rstring('')
self.strokeDashOffset = rint(0)
self.strokeLineCap = rstring('')
self.strokeLineJoin = rstring('')
self.strokeMiterLimit = rint(0)
self.fillColour = rint(self.GREY)
self.fillRule = rstring('')
##
# Applies the settings in the ShapeSettingsData to the ROITypeI
# @param shape the omero.model.ROITypeI that these settings will
# be applied to
#
def setROIShapeSettings(self, shape):
shape.setStrokeColor(self.strokeColour)
shape.setStrokeWidth(self.strokeWidth)
shape.setStrokeDashArray(self.strokeDashArray)
shape.setStrokeDashOffset(self.strokeDashOffset)
shape.setStrokeLineCap(self.strokeLineCap)
shape.setStrokeLineJoin(self.strokeLineJoin)
shape.setStrokeMiterLimit(self.strokeMiterLimit)
shape.setFillColor(self.fillColour)
shape.setFillRule(self.fillRule)
##
# Set the Stroke settings of the ShapeSettings.
# @param colour The colour of the stroke.
# @param width The stroke width.
#
def setStrokeSettings(self, colour, width=1):
self.strokeColour = rint(colour)
self.strokeWidth = LengthI()
self.strokeWidth.setValue(width)
self.strokeWidth.setUnit(UnitsLength.POINT)
###
# Set the Fill Settings for the ShapeSettings.
# @param colour The fill colour of the shape.
def setFillSettings(self, colour):
self.fillColour = rstring(colour)
##
# Get the stroke settings as the tuple (strokeColour, strokeWidth).
# @return See above.
#
def getStrokeSettings(self):
return (self.strokeColour.getValue(), self.strokeWidth.getValue())
##
# Get the fill setting as a tuple of (fillColour)
# @return See above.
#
def getFillSettings(self):
return (self.fillColour.getValue())
##
# Get the tuple ((stokeColor, strokeWidth), (fillColour)).
# @return see above.
#
def getSettings(self):
return (self.getStrokeSettings(), self.getFillSettings())
##
# Set the current shapeSettings from the ROI roi.
# @param roi see above.
#
def getShapeSettingsFromROI(self, roi):
self.strokeColour = roi.getStrokeColor()
self.strokeWidth = roi.getStrokeWidth()
self.strokeDashArray = roi.getStrokeDashArray()
self.strokeDashOffset = roi.getStrokeDashOffset()
self.strokeLineCap = roi.getStrokeLineCap()
self.strokeLineJoin = roi.getStrokeLineJoin()
self.strokeMiterLimit = roi.getStrokeMiterLimit()
self.fillColour = roi.getFillColor()
self.fillRule = roi.getFillRule()
