def main():
CONFIG_FILE = os.path.join(PROJECT_DIR, 'config_test.yml')
CONFIG = {}
with open(CONFIG_FILE, 'r') as cfg:
CONFIG = yaml.load(cfg, Loader=yaml.FullLoader)
conn_settings = CONFIG['omero_conn']
broker = OMERODataBroker(conn_settings)
cache_manager = OmeroCacheManager()
# broker.open_omero_session()
dir_path = os.path.join(
PROJECT_DIR, "tests", "test_data",
"Morph_Batgirl_OldCamera_Htb2_Myo1_Hog1_Lte1_Vph1_00")
# cache_manager.create_db_info(broker)
# cache_manager.save_matlab_object()
cache_manager.save_db_data(broker)
cache_manager.load_matlab_object()
# upload_metadata(broker, dir_path)
broker.close_omero_session()
def search_by_type_field(self, type, field, value, case_sensitive=False):
broker = OMERODataBroker(username=self.USERNAME, password=self.PASSWORD, server=self.SERVER, port=self.PORT,
image_processor=DefaultImageProcessor())
broker.open_omero_session()
objects = broker.find_objects_by_type_field_value(type, field, value, case_sensitive)
broker.close_omero_session()
return objects
def search_by_query(self, query, params):
broker = OMERODataBroker(username=self.USERNAME, password=self.PASSWORD, server=self.SERVER, port=self.PORT,
image_processor=DefaultImageProcessor())
broker.open_omero_session()
objects = broker.find_objects_by_query(query, params)
broker.close_omero_session()
return objects
def main():
PROJECT_DIR = os.path.join(os.path.dirname(os.path.realpath(__file__)), "..", "..")
CONFIG_FILE = os.path.join(PROJECT_DIR, 'config_test.yml')
CONFIG = {}
with open(CONFIG_FILE, 'r') as cfg:
CONFIG = yaml.load(cfg, Loader=yaml.FullLoader)
conn_settings = CONFIG['omero_conn']
broker = OMERODataBroker(CONFIG,
image_processor=image_processor_impl())
broker.open_omero_session()
# dir_path = os.path.join("","/var","data_dir")
dir_path = os.path.join(PROJECT_DIR,"..","Morph_Batgirl_OldCamera_Htb2_Myo1_Hog1_Lte1_Vph1_00")
data_transfer_manager = DataTransferManager()
data_transfer_manager.upload_data_dir(broker, "test_dataset", dir_path, hypercube=False)
# upload_metadata(broker, dir_path)
broker.close_omero_session()