def load(conn, filepath):
"""
Import new tag(s) from json.
"""
if filepath:
fobj = open(filepath, "r")
else:
sys.stderr.write("Error: No file is given.\n")
sys.exit(1)
p = json.load(fobj)
if fobj is not sys.stdin:
fobj.close()
update = conn.getUpdateService()
tagList2 = []
for tset in p:
if "tag" in tset:
tag = TagAnnotationI()
tag.setTextValue(rstring(tset["tag"]))
if tset["desc"]:
tag.setDescription(rstring(tset["desc"]))
tagList2.append(tag)
#end if
if "tagset" in tset:
tagList = []
for t in tset['tags']:
tag = TagAnnotationI()
tag.setTextValue(rstring(t["name"]))
if t["desc"]:
tag.setDescription(rstring(t["desc"]))
tagList.append(tag)
#end for
tagList = update.saveAndReturnArray(tagList)
tag = TagAnnotationI()
tag.setTextValue(rstring(tset["tagset"]))
if tset["desc"]:
tag.setDescription(rstring(tset["desc"]))
tag.setNs(rstring(omero.constants.metadata.NSINSIGHTTAGSET))
tag = update.saveAndReturnObject(tag)
links = []
for child in tagList:
l = AnnotationAnnotationLinkI()
l.setChild(child)
l.setParent(tag)
links.append(l)
#end for
update.saveAndReturnArray(links)
#end if
#end for
update.saveAndReturnArray(tagList2)
def addTagAs(self, user, project):
""" Adds and links a Tag. """
tag = TagAnnotationI()
tag.setTextValue(rstring(self.tag_text))
tag.setNs(rstring(self.tag_ns))
tag = self.updateServices[user].saveAndReturnObject(tag)
self.linkTagAs(user, project, tag)
return tag
def testBasicUsage(self):
img = self.new_image(name="name")
img.linkAnnotation(TagAnnotationI())
img = self.update.saveAndReturnObject(img)
img = self.query.findByQuery(
"select img from Image img "
"join fetch img.annotationLinksCountPerOwner "
"where img.id = %s" % (img.id.val), None)
assert img
assert img.getAnnotationLinksCountPerOwner()[self.ctx.userId] > 0
def testBasicUsage(self):
usr = self.client.sf.getAdminService().getEventContext().userId
img = ImageI()
img.name = rstring("name")
img.acquisitionDate = rtime(0)
tag = TagAnnotationI()
img.linkAnnotation(tag)
img = self.client.sf.getUpdateService().saveAndReturnObject(img)
img = self.client.sf.getQueryService().findByQuery(
"""
select img from Image img
join fetch img.annotationLinksCountPerOwner
where img.id = %s
""" % (img.id.val), None)
self.assert_(img)
self.assert_(img.getAnnotationLinksCountPerOwner()[usr] > 0)
def testLoginToPublicGroupTicket1940(self):
# As root create a new group
uuid = self.uuid()
g = ExperimenterGroupI()
g.name = rstring(uuid)
g.details.permissions = PermissionsI("rwrwrw")
gid = self.root.sf.getAdminService().createGroup(g)
# As a regular user, login to that group
rv = self.root.getPropertyMap()
ec = self.client.sf.getAdminService().getEventContext()
public_client = omero.client(rv)
public_client.getImplicitContext().put("omero.group", uuid)
sf = public_client.createSession(ec.userName, "foo")
ec = sf.getAdminService().getEventContext()
self.assertEquals(uuid, ec.groupName)
# But can the user write anything?
tag = TagAnnotationI()
sf.getUpdateService().saveObject(tag)
def testLoginToPublicGroupTicket1940(self):
# As root create a new group
uuid = self.uuid()
g = ExperimenterGroupI()
g.name = rstring(uuid)
g.ldap = rbool(False)
g.details.permissions = PermissionsI("rwrwrw")
self.root.sf.getAdminService().createGroup(g)
# As a regular user, login to that group
rv = self.root.getPropertyMap()
ec = self.client.sf.getAdminService().getEventContext()
public_client = omero.client(rv)
public_client.getImplicitContext().put("omero.group", uuid)
sf = public_client.createSession(ec.userName, ec.userName)
ec = sf.getAdminService().getEventContext()
assert uuid == ec.groupName
# But can the user write anything?
tag = TagAnnotationI()
tag = sf.getUpdateService().saveAndReturnObject(tag)
# And link?
# And edit? cF. READ-ONLY & READ-LINK
sf.getUpdateService().deleteObject(tag)
def makeTag(self):
tag = TagAnnotationI()
tag.setTextValue(rstring(self.tag_text))
tag.setNs(rstring(self.tag_ns))
return tag