def run(self):
try:
self.stdout = NeuronEngine.compile_modfiles(self.modelpath)
except sp.CalledProcessError as err:
self.stderr = err.output
self.returncode = err.returncode
inform('Error compiling modfiles:', self.stderr, indent=2)
with working_dir(dirname(self.modelpath)):
inform("Running %s on %s..." % (self.name, self.modelpath),
indent=1)
p = sp.Popen(['nrniv', '-python', self.modelpath, '-nogui'],
stdin=sp.PIPE, stdout=sp.PIPE, stderr=sp.PIPE)
cmd = '''\
%s
''' % ('\n'.join(self.extra_pars))
if sys.version_info[0]==3:
c = dedent(cmd).encode()
else:
c = dedent(cmd)
stdout, stderr = p.communicate(c)
# with open('/tmp/omv_test.nrn.stdout', 'w') as f:
# f.write(stdout)
self.stdout = str(stdout.decode())
self.stderr = str(stderr.decode())
inform("OUT: %s"% self.stdout, verbosity=1, indent=2)
inform("ERR: %s"% self.stderr, verbosity=1, indent=2)
inform("returncode: [%s]"% p.returncode, verbosity=1, indent=2)
self.returncode = p.returncode
if self.returncode != 0:
raise EngineExecutionError
def run(self):
try:
self.stdout = NeuronEngine.compile_modfiles(self.modelpath)
except sp.CalledProcessError as err:
self.stderr = err.output
self.returncode = err.returncode
inform('Error compiling modfiles:', self.stderr, indent=2)
with working_dir(dirname(self.modelpath)):
inform("Running %s on %s..." % (self.name, self.modelpath),
indent=1)
p = sp.Popen(['nrniv', '-python', self.modelpath, '-nogui'],
stdin=sp.PIPE, stdout=sp.PIPE, stderr=sp.PIPE)
cmd = '''\
%s
''' % ('\n'.join(self.extra_pars))
stdout, stderr = p.communicate(dedent(cmd))
# with open('/tmp/omv_test.nrn.stdout', 'w') as f:
# f.write(stdout)
self.stdout = stdout
self.stderr = stderr
inform("OUT: ", stdout, verbosity=1, indent=2)
inform("ERR: ", stderr, verbosity=1, indent=2)
inform("returncode: ", p.returncode, verbosity=1, indent=2)
self.returncode = p.returncode
if self.returncode is not 0:
raise EngineExecutionError
def run(self):
try:
self.stdout = NeuronEngine.compile_modfiles(self.modelpath)
except sp.CalledProcessError as err:
self.stderr = err.output
self.returncode = err.returncode
inform('Error compiling modfiles:', self.stderr, indent=2)
try:
inform("Running file %s with %s" %
(trim_path(self.modelpath), self.name),
indent=1)
self.stdout = check_output(['python', self.modelpath, 'neuron'],
cwd=os.path.dirname(self.modelpath))
self.returncode = 0
except sp.CalledProcessError as err:
self.returncode = err.returncode
self.stdout = err.output
raise EngineExecutionError
except Exception as err:
inform("Another error with running %s: " % self.name,
err,
indent=1)
self.returncode = -1
self.stdout = "???"
def run(self):
try:
self.stdout = NeuronEngine.compile_modfiles(self.modelpath)
except sp.CalledProcessError as err:
self.stderr = err.output
self.returncode = err.returncode
inform('Error compiling modfiles:', self.stderr, indent=2)
try:
inform("Running file %s with %s" % (trim_path(self.modelpath), self.name), indent=1)
self.stdout = check_output(['python', self.modelpath, 'neuron'],
cwd=os.path.dirname(self.modelpath))
self.returncode = 0
except sp.CalledProcessError as err:
self.returncode = err.returncode
self.stdout = err.output
raise EngineExecutionError
except Exception as err:
inform("Another error with running %s: "%self.name, err, indent=1)
self.returncode = -1
self.stdout = "???"