def test_simple_annotate(self): """ Annotate a simple example. """ base_config_location = "testdata/ensembl/saccer/" config_parser = ConfigUtils.createConfigParser(base_config_location + "ensembl.config") title = config_parser.get("general", "title") version = config_parser.get("general", "version") src_file = config_parser.get("general", "src_file") ensembl_ds = EnsemblTranscriptDatasource(title=title, version=version, src_file=src_file) m = MutationData() m.chr = "22" m.start = "22161963" m.end = "22161963" m.ref_allele = "C" m.alt_allele = "A" m2 = ensembl_ds.annotate_mutation(m)