コード例 #1
0
 def input(self,item):
     if isinstance(item, str):
         assert not os.path.normpath(item).startswith('..'), "Input files for AzureBatch must be under the current working directory. This input file is not: '{0}'".format(item)
         itemnorm = "./"+os.path.normpath(item).replace("\\","/")
         blobxfer(r"blobxfer.py --skipskip --storageaccountkey {} --upload {} {} {}".format(self.storage_key,self.storage_account,self.blob_fn,itemnorm),wd=".")
     elif hasattr(item,"copyinputs"):
         item.copyinputs(self)
コード例 #2
0
    def _process_result(self, distributable, inputOutputCopier,output_blobfn, run_dir_rel):

        inputOutputCopier.output(distributable) # Copy (update) any output files from the blob

        blobxfer(r"blobxfer.py --storageaccountkey {0} --download {1} {2}/{3} . --remoteresource result.p".format(self.storage_key,self.storage_account_name,self.container,output_blobfn), wd=run_dir_rel)
        resultp_filename = os.path.join(run_dir_rel, "result.p")
        with open(resultp_filename, mode='rb') as f:
            result = pickle.load(f)

        return result
コード例 #3
0
ファイル: AzureBatch.py プロジェクト: HealthML/FaST-LMM
 def output(self, item):
     if isinstance(item, str):
         itemnorm = "./" + os.path.normpath(item).replace("\\", "/")
         blobxfer(
             r"blobxfer.py --skipskip --storageaccountkey {} --download {} {} {} --remoteresource {}"
             .format(self.storage_key, self.storage_account, self.blob_fn,
                     ".", itemnorm),
             wd=".")
     elif hasattr(item, "copyoutputs"):
         item.copyoutputs(self)
コード例 #4
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    def _update_python_path_function(self):
        localpythonpath = os.environ.get("PYTHONPATH") #!!should it be able to work without pythonpath being set (e.g. if there was just one file)? Also, is None really the return or is it an exception.

        if localpythonpath == None: raise Exception("Expect local machine to have 'pythonpath' set")
        for i, localpathpart in enumerate(localpythonpath.split(';')):
            logging.info("Updating code on pythonpath as needed: {0}".format(localpathpart))
            blobxfer(r"blobxfer.py --skipskip --delete --storageaccountkey {0} --upload {1} {2}-pp-v{3}-{4} .".format(
                            self.storage_key,               #0
                            self.storage_account_name,      #1
                            self.container,                 #2
                            self.pp_version,                #3
                            i,                              #4
                            ),
                        wd=localpathpart)