def convert_assocs(ont, file, outfile, p, args):
assocs = p.parse(open(file, "r"), None)
w = GpadWriter()
fmt = args.to
if fmt == 'gpad':
w = GpadWriter()
else:
raise ValueError("Not supported: {}".format(fmt))
w.file = outfile
w.write(assocs)
def write_assocs(assocs, outfile, args):
w = GpadWriter()
fmt = args.to
if fmt is None or fmt == 'gaf':
w = GafWriter()
elif fmt == 'gpad':
w = GpadWriter()
else:
raise ValueError("Not supported: {}".format(fmt))
w.file = outfile
w.write(assocs)