#! /usr/bin/env python
# Experiment Navigator user interaction script
# Julia Daniel, Akhila Moturu, Eric Cramer, and Gaby Steiner
# Final project for CS 270 / BMI 210, Winter 2018
# ----------------------------------------------------------
import ontology as o
import sys
if __name__ == "__main__":
print("* ~ * ~ * ~ * ~ * ~ * ~ * ~ * ~ * ~ *")
print("Welcome to the Experiment Navigator!")
print("Loading our cutting-edge experiment ontology...")
ont = o.build_ontology()
print("...done!")
print(
"The Experiment Navigator is your tool to help find the right experiment for you, given a hypothesis you'd like to test."
)
print("Please enter your hypothesis here, in your own words:")
hypothesis = input(" > ")
# print(hypothesis)
print(
"Great! In order to determine which experiment(s) you should conduct to test this hypothesis, we need to know more about the substances and information involved."
)
molecule = input("What type of molecule are you working with? ")
if molecule.lower() == "protein":
typeprotein = input(
"What do you want to learn about the protein? Please type one of the following: location, structure, interaction, quantification, detection. "
)
#DONE WITH LOCATION
if typeprotein.lower() == "location":
res = g.query("select (COUNT(?a) as ?CNT) where {?a <" + PREFIX + '/' +
relation + "> ?s .}")
output = str(list(res)[0][0])
elif q_number == 11:
res = g.query("select (COUNT(?s) as ?CNT) where {?s <" + PREFIX + '/' +
relation + "> <" + PREFIX + '/' + entity + "> .}")
output = str(list(res)[0][0])
elif q_number == 12:
res = g.query("select (COUNT(?s) as ?CNT) where {?s <"+PREFIX +'/'+ relation + "> <"+PREFIX +'/'+entity+ "> ." \
"?s <"+PREFIX +'/'+ relation + "> <"+PREFIX +'/'+entity2+ "> .}"
)
output = str(list(res)[0][0])
else:
output = None
print(output)
if __name__ == "__main__":
input = sys.argv[1]
if input == 'question':
q_number, relation, entity, entity2 = extract_q_info(sys.argv[2])
query(q_number, relation, entity, entity2)
elif input == 'create':
build_ontology()