def test_run(overwrite_desired_data=False):
lpy_filename = os.path.join(lgrass.__path__[0], "lgrass.lpy")
lsys = Lsystem(lpy_filename)
axiom = lsys.axiom
lsys.meteo_path = os.path.join(INPUTS_DIRPATH, 'meteo_file.csv')
lsys.INPUTS_DIRPATH = INPUTS_DIRPATH
lsys.OUTPUTS_DIRPATH = OUTPUTS_DIRPATH
lsys.GRAPHS_DIRPATH = GRAPHS_DIRPATH
lsys.derivationLength = NSTEP
lsys.DureeExp = NSTEP
lsys.option_tallage = True
lsys.option_senescence = True
lsys.option_floraison = True
lsys.option_caribu = 'Off'
lsys.option_tiller_regression = False
lsys.option_mophogenetic_regulation_by_carbone = False
lsys.derive(axiom, NSTEP)
# convert the outputs to Pandas dataframe
surface_biomass = pd.read_csv(lsys.chemin_fichier1.name)
evol = pd.read_csv(lsys.chemin_fichier2.name)
output_induction_file_path = os.path.join(OUTPUTS_DIRPATH,
'output_induction.csv')
output_induction = pd.read_csv(output_induction_file_path)
output_organ_lengths_file_path = os.path.join(OUTPUTS_DIRPATH,
'output_organ_lengths.csv')
output_organ_lengths = pd.read_csv(output_organ_lengths_file_path)
# # compare outputs
compare_actual_to_desired(OUTPUTS_DIRPATH, surface_biomass,
DESIRED_SORTIE_SURFACE_BIOMASS_FILENAME,
lsys.chemin_fichier1.name,
overwrite_desired_data)
compare_actual_to_desired(OUTPUTS_DIRPATH, evol,
DESIRED_SERIE_FOLIAIRE_FILENAME,
lsys.chemin_fichier2.name,
overwrite_desired_data)
compare_actual_to_desired(OUTPUTS_DIRPATH, output_induction,
DESIRED_OUTPUT_INDUCTION_FILENAME,
output_induction_file_path,
overwrite_desired_data)
compare_actual_to_desired(OUTPUTS_DIRPATH, output_organ_lengths,
DESIRED_OUTPUT_ORGAN_LENGTHS_FILENAME,
output_organ_lengths_file_path,
overwrite_desired_data)
if overwrite_desired_data:
print("New desired files written")
else:
print("Test passed successfully")
