def test_export(self):
with app.app_context():
self.login()
# SQL export
rv = self.app.get(url_for('export_sql'))
assert b'Export SQL' in rv.data
rv = self.app.post(url_for('export_sql'), follow_redirects=True)
assert b'Data was exported as SQL' in rv.data
date_string = DateMapper.current_date_for_filename()
self.app.get(url_for('download_sql', filename=date_string + '_dump.sql'))
rv = self.app.get(url_for('delete_sql', filename=date_string + '_dump.sql'),
follow_redirects=True)
assert b'File deleted' in rv.data
# CSV export
rv = self.app.get(url_for('export_csv'))
assert b'Export CSV' in rv.data
rv = self.app.post(url_for('export_csv'), follow_redirects=True,
data={'zip': True, 'model_class': True,
'gis_point': True, 'gis_format': 'wkt'})
assert b'Data was exported as CSV' in rv.data
rv = self.app.post(url_for('export_csv'), follow_redirects=True,
data={'model_class': True, 'timestamps': True,
'gis_polygon': True, 'gis_format': 'postgis'})
assert b'Data was exported as CSV' in rv.data
rv = self.app.post(url_for('export_csv'), follow_redirects=True,
data={'model_class': True, 'timestamps': True, 'gis_point': True,
'gis_polygon': True, 'gis_format': 'coordinates'})
assert b'Data was exported as CSV' in rv.data
date_string = DateMapper.current_date_for_filename()
self.app.get(url_for('download_csv', filename=date_string + '_csv.zip'))
rv = self.app.get(url_for('delete_csv', filename=date_string + '_csv.zip'),
follow_redirects=True)
assert b'File deleted' in rv.data
def export_csv(form):
""" Creates CSV file(s) in the export/csv folder, filename begins with current date."""
import pandas.io.sql as psql
date_string = DateMapper.current_date_for_filename()
path = app.config['EXPORT_FOLDER_PATH'] + '/csv/'
if form.zip.data:
path = '/tmp/' + date_string + '_openatlas_csv_export'
if os.path.exists(path):
shutil.rmtree(path) # pragma: no cover
os.makedirs(path)
tables = {
'model_class': ['id', 'name', 'code'],
'model_class_inheritance': ['id', 'super_code', 'sub_code'],
'model_entity': ['id', 'name', 'description', 'class_code', 'begin_from', 'begin_to',
'begin_comment', 'end_from', 'end_to', 'end_comment'],
'model_link': ['id', 'property_code', 'domain_id', 'range_id', 'type_id', 'description',
'begin_from', 'begin_to', 'begin_comment', 'end_from', 'end_to',
'end_comment'],
'model_property': ['id', 'code', 'range_class_code', 'domain_class_code', 'name',
'name_inverse'],
'model_property_inheritance': ['id', 'super_code', 'sub_code'],
'gis_point': ['id', 'entity_id', 'name', 'description', 'type'],
'gis_linestring': ['id', 'entity_id', 'name', 'description', 'type'],
'gis_polygon': ['id', 'entity_id', 'name', 'description', 'type']}
gis_tables = ['gis_point', 'gis_linestring', 'gis_polygon']
for table, fields in tables.items():
if getattr(form, table).data:
if form.timestamps.data:
fields.append('created')
fields.append('modified')
if table in gis_tables:
if form.gis_format.data == 'wkt':
fields.append("ST_AsText(geom)")
elif form.gis_format.data == 'coordinates':
if table == 'gis_point':
fields.append("ST_X(geom) || ' ' || ST_Y(geom) AS coordinates")
else:
fields.append("""
ST_X(public.ST_PointOnSurface(geom)) || ' ' ||
ST_Y(public.ST_PointOnSurface(geom)) AS polygon_center_point""")
else:
fields.append('geom')
sql = "SELECT {fields} FROM {table};".format(
fields=','.join(fields), table=table.replace('_', '.', 1))
data_frame = psql.read_sql(sql, g.db)
file_path = path + '/{date}_{name}.csv'.format(date=date_string, name=table)
data_frame.to_csv(file_path, index=False)
if form.zip.data:
info = 'CSV export from: {host}\n'. format(host=request.headers['Host'])
info += 'Created: {date} by {user}\nOpenAtlas version: {version}'.format(
date=date_string, user=current_user.username, version=app.config['VERSION'])
with open(path + '/info.txt', "w") as file:
print(info, file=file)
zip_file = app.config['EXPORT_FOLDER_PATH'] + '/csv/' + date_string + '_csv'
shutil.make_archive(zip_file, 'zip', path)
shutil.rmtree(path)
return
def export_sql():
""" Creates a pg_dump file in the export/sql folder, filename begins with current date."""
# Todo: prevent exposing the database password to the process list
path = '{path}/sql/{date}_dump.sql'.format(path=app.config['EXPORT_FOLDER_PATH'],
date=DateMapper.current_date_for_filename())
command = '''pg_dump -h {host} -d {database} -U {user} -p {port} -f {file}'''.format(
host=app.config['DATABASE_HOST'],
database=app.config['DATABASE_NAME'],
port=app.config['DATABASE_PORT'],
user=app.config['DATABASE_USER'],
file=path)
try:
subprocess.Popen(command, shell=True, stdin=subprocess.PIPE,
env={'PGPASSWORD': app.config['DATABASE_PASS']}).wait()
except Exception: # pragma: no cover
return False
return True
def export_sql() -> bool:
""" Creates a pg_dump file in the export/sql folder, filename begins with current date."""
# Todo: prevent exposing the database password to the process list
file_name = DateMapper.current_date_for_filename() + '_dump.sql'
path = app.config['EXPORT_FOLDER_PATH'].joinpath('sql', file_name)
command = """pg_dump -h {host} -d {database} -U {user} -p {port} -f {file}""".format(
host=app.config['DATABASE_HOST'],
database=app.config['DATABASE_NAME'],
port=app.config['DATABASE_PORT'],
user=app.config['DATABASE_USER'],
file=path)
try:
subprocess.Popen(command,
shell=True,
stdin=subprocess.PIPE,
env={
'PGPASSWORD': app.config['DATABASE_PASS']
}).wait()
except Exception: # pragma: no cover
return False
return True
def export_sql():
""" Creates a pg_dump file in the export/sql folder, filename begins with current date."""
# Todo: prevent exposing the database password to the process list
if os.name != "posix": # pragma: no cover
return False # For other operating systems e.g. Windows, we would need adaptions here
path = '{path}/sql/{date}_dump.sql'.format(
path=app.config['EXPORT_FOLDER_PATH'],
date=DateMapper.current_date_for_filename())
command = """pg_dump -h {host} -d {database} -U {user} -p {port} -f {file}""".format(
host=app.config['DATABASE_HOST'],
database=app.config['DATABASE_NAME'],
port=app.config['DATABASE_PORT'],
user=app.config['DATABASE_USER'],
file=path)
try:
subprocess.Popen(command,
shell=True,
stdin=subprocess.PIPE,
env={
'PGPASSWORD': app.config['DATABASE_PASS']
}).wait()
except Exception: # pragma: no cover
return False
return True
def export_csv(form: FlaskForm) -> None:
""" Creates CSV file(s) in the export/csv folder, filename begins with current date."""
import pandas.io.sql as psql
date_string = DateMapper.current_date_for_filename()
path = app.config['EXPORT_FOLDER_PATH'].joinpath('csv')
if form.zip.data:
path = app.config['TMP_FOLDER_PATH'].joinpath(
date_string + '_openatlas_csv_export')
if os.path.exists(path):
shutil.rmtree(path) # pragma: no cover
os.makedirs(path)
tables = {
'model_class': ['id', 'name', 'code'],
'model_class_inheritance': ['id', 'super_code', 'sub_code'],
'model_entity': [
'id', 'name', 'description', 'class_code', 'begin_from',
'begin_to', 'begin_comment', 'end_from', 'end_to',
'end_comment'
],
'model_link': [
'id', 'property_code', 'domain_id', 'range_id', 'type_id',
'description', 'begin_from', 'begin_to', 'begin_comment',
'end_from', 'end_to', 'end_comment'
],
'model_property': [
'id', 'code', 'range_class_code', 'domain_class_code', 'name',
'name_inverse'
],
'model_property_inheritance': ['id', 'super_code', 'sub_code'],
'gis_point': ['id', 'entity_id', 'name', 'description', 'type'],
'gis_linestring':
['id', 'entity_id', 'name', 'description', 'type'],
'gis_polygon': ['id', 'entity_id', 'name', 'description', 'type']
}
gis_tables = ['gis_point', 'gis_linestring', 'gis_polygon']
for table, fields in tables.items():
if getattr(form, table).data:
if form.timestamps.data:
fields.append('created')
fields.append('modified')
if table in gis_tables:
if form.gis_format.data == 'wkt':
fields.append("ST_AsText(geom)")
elif form.gis_format.data == 'coordinates':
if table == 'gis_point':
fields.append(
"ST_X(geom) || ' ' || ST_Y(geom) AS coordinates"
)
else:
fields.append("""
ST_X(public.ST_PointOnSurface(geom)) || ' ' ||
ST_Y(public.ST_PointOnSurface(geom)) AS polygon_center_point"""
)
else:
fields.append('geom')
sql = "SELECT {fields} FROM {table};".format(
fields=','.join(fields), table=table.replace('_', '.', 1))
data_frame = psql.read_sql(sql, g.db)
data_frame.to_csv(path.joinpath(date_string + '_' + table +
'.csv'),
index=False)
if form.zip.data:
info = 'CSV export from: {host}\n'.format(
host=request.headers['Host'])
info += 'Created: {date} by {user}\nOpenAtlas version: {version}'.format(
date=date_string,
user=current_user.username,
version=app.config['VERSION'])
with open(path.joinpath('info.txt'), "w") as file:
print(info, file=file)
zip_file = app.config['EXPORT_FOLDER_PATH'].joinpath(
'csv', date_string + '_csv')
shutil.make_archive(zip_file, 'zip', path)
shutil.rmtree(path)