def test_job_from_file(self):
# make a hazard job
haz_cfg = helpers.get_data_path('event_based_hazard/job.ini')
haz_job = engine.job_from_file(haz_cfg, 'test_user')
# make a fake Output
out = models.Output.objects.create(
oq_job=haz_job, display_name='fake', output_type='gmf')
# make a risk job
risk_cfg = helpers.get_data_path('event_based_risk/job.ini')
with mock.patch.object(logs.LOG, 'warn') as warn:
risk_job = engine.job_from_file(
risk_cfg, 'another_user', hazard_output_id=out.id)
# make sure a warning is printed because you are using a hazard
# generated by a different user
self.assertEqual(warn.call_args[0],
('You are using a hazard calculation ran by %s',
'test_user'))
with mock.patch.object(logs.LOG, 'warn') as warn:
risk_job = engine.job_from_file(
risk_cfg, 'test_user', hazard_output_id=out.id,
quantile_loss_curves='0.1 0.2')
# make sure a warning is printed because you are using
# quantile_loss_curves with a single hazard output
self.assertEqual(
warn.call_args[0][0],
'quantile_loss_curves is on, but you passed a single hazard '
'output: the statistics will not be computed')
# make sure the hazard job is associated correctly
self.assertEqual(risk_job.hazard_calculation.id, haz_job.id)
def run_job(cfg_file, log_level, log_file, exports='',
hazard_calculation_id=None):
"""
Run a job using the specified config file and other options.
:param str cfg_file:
Path to calculation config (INI-style) files.
:param str log_level:
'debug', 'info', 'warn', 'error', or 'critical'
:param str log_file:
Path to log file.
:param exports:
A comma-separated string of export types requested by the user.
:param hazard_calculation_id:
ID of the previous calculation or None
"""
# if the master dies, automatically kill the workers
concurrent_futures_process_monkeypatch()
job_ini = os.path.abspath(cfg_file)
job_id, oqparam = eng.job_from_file(
job_ini, getpass.getuser(), hazard_calculation_id)
calc = eng.run_calc(job_id, oqparam, log_level, log_file, exports,
hazard_calculation_id=hazard_calculation_id)
calc.monitor.flush()
for line in logs.dbcmd('list_outputs', job_id, False):
print(line)
return job_id
def submit_job(job_file, temp_dir, dbname,
callback_url=None, foreign_calc_id=None,
hazard_output_id=None, hazard_calculation_id=None,
logfile=None):
"""
Create a job object from the given job.ini file in the job directory
and submit it to the job queue.
"""
try:
job = oq_engine.job_from_file(
job_file, "platform", DEFAULT_LOG_LEVEL, [], hazard_output_id,
hazard_calculation_id)
except: # catch errors in the job creation phase
etype, exc, tb = sys.exc_info()
einfo = "".join(traceback.format_tb(tb))
einfo += '%s: %s' % (etype.__name__, exc)
tasks.update_calculation(callback_url, status="failed", einfo=einfo)
raise
calc = job.calculation
job_type = 'risk' if job.calculation is job.risk_calculation else 'hazard'
future = executor.submit(
tasks.run_calc, job_type, calc.id, temp_dir,
callback_url, foreign_calc_id, dbname, logfile)
return job, future
def run_job(job_ini,
log_level='info',
log_file=None,
exports='',
username=getpass.getuser(),
**kw):
"""
Run a job using the specified config file and other options.
:param str job_ini:
Path to calculation config (INI-style) files.
:param str log_level:
'debug', 'info', 'warn', 'error', or 'critical'
:param str log_file:
Path to log file.
:param exports:
A comma-separated string of export types requested by the user.
:param username:
Name of the user running the job
:param kw:
Extra parameters like hazard_calculation_id and calculation_mode
"""
job_id = logs.init('job', getattr(logging, log_level.upper()))
with logs.handle(job_id, log_level, log_file):
job_ini = os.path.abspath(job_ini)
oqparam = eng.job_from_file(job_ini, job_id, username, **kw)
kw['username'] = username
eng.run_calc(job_id, oqparam, exports, **kw)
for line in logs.dbcmd('list_outputs', job_id, False):
safeprint(line)
return job_id
def test_job_from_file(self):
# make a hazard job
haz_cfg = helpers.get_data_path('event_based_hazard/job.ini')
haz_job = engine.job_from_file(haz_cfg, 'test_user')
# make a fake Output
out = models.Output.objects.create(
oq_job=haz_job, display_name='fake', output_type='gmf')
# make a risk job
risk_cfg = helpers.get_data_path('event_based_risk/job.ini')
risk_job = engine.job_from_file(risk_cfg, 'test_user',
hazard_output_id=out.id)
# make sure the hazard job is associated correctly
oqjob = risk_job.risk_calculation.hazard_calculation
self.assertEqual(oqjob.id, haz_job.id)
def get_job(cfg, username="******", hazard_calculation_id=None,
hazard_output_id=None, **extras):
"""
Given a path to a config file and a hazard_calculation_id
(or, alternatively, a hazard_output_id, create a
:class:`openquake.engine.db.models.OqJob` object for a risk calculation.
"""
if hazard_calculation_id is None and hazard_output_id is None:
return engine.job_from_file(cfg, username, 'error', [], **extras)
job = engine.prepare_job(username)
oqparam = readini.parse_config(
open(cfg), hazard_calculation_id, hazard_output_id)
params = vars(oqparam)
if hazard_calculation_id is None:
params['hazard_calculation_id'] = models.Output.objects.get(
pk=hazard_output_id).oq_job.id
# we are removing intensity_measure_types_and_levels because it is not
# a field of RiskCalculation; this ugliness will disappear when
# RiskCalculation will be removed
del params['intensity_measure_types_and_levels']
job.save_params(params)
risk_calc = engine.create_calculation(models.RiskCalculation, params)
risk_calc = models.RiskCalculation.objects.get(id=risk_calc.id)
job.risk_calculation = risk_calc
job.save()
return job
def run_job(job_ini, log_level='info', log_file=None, exports='',
username=getpass.getuser(), **kw):
"""
Run a job using the specified config file and other options.
:param str job_ini:
Path to calculation config (INI-style) files.
:param str log_level:
'debug', 'info', 'warn', 'error', or 'critical'
:param str log_file:
Path to log file.
:param exports:
A comma-separated string of export types requested by the user.
:param username:
Name of the user running the job
:param kw:
Extra parameters like hazard_calculation_id and calculation_mode
"""
job_id = logs.init('job', getattr(logging, log_level.upper()))
with logs.handle(job_id, log_level, log_file):
job_ini = os.path.abspath(job_ini)
oqparam = eng.job_from_file(job_ini, job_id, username, **kw)
kw['username'] = username
eng.run_calc(job_id, oqparam, exports, **kw)
for line in logs.dbcmd('list_outputs', job_id, False):
safeprint(line)
return job_id
def run_job(cfg_file, log_level='info', log_file=None, exports='',
hazard_calculation_id=None, **kw):
"""
Run a job using the specified config file and other options.
:param str cfg_file:
Path to calculation config (INI-style) files.
:param str log_level:
'debug', 'info', 'warn', 'error', or 'critical'
:param str log_file:
Path to log file.
:param exports:
A comma-separated string of export types requested by the user.
:param hazard_calculation_id:
ID of the previous calculation or None
"""
# if the master dies, automatically kill the workers
job_ini = os.path.abspath(cfg_file)
job_id, oqparam = eng.job_from_file(
job_ini, getpass.getuser(), hazard_calculation_id)
calc = eng.run_calc(job_id, oqparam, log_level, log_file, exports,
hazard_calculation_id=hazard_calculation_id, **kw)
calc._monitor.flush()
for line in logs.dbcmd('list_outputs', job_id, False):
safeprint(line)
return job_id
def submit_job(job_ini, user_name, hazard_job_id=None,
loglevel=DEFAULT_LOG_LEVEL, logfile=None, exports=''):
"""
Create a job object from the given job.ini file in the job directory
and submit it to the job queue. Returns the job ID.
"""
job_id, oqparam = engine.job_from_file(job_ini, user_name, hazard_job_id)
fut = executor.submit(engine.run_calc, job_id, oqparam, loglevel,
logfile, exports, hazard_job_id)
return job_id, fut
def run_job(cfg, exports='xml,csv', hazard_calculation_id=None, **params):
"""
Given the path to a job config file and a hazard_calculation_id
or a output, run the job.
:returns: a calculator object
"""
job_id, oqparam = engine.job_from_file(
cfg, 'openquake', 'error', [], hazard_calculation_id, **params)
logfile = os.path.join(tempfile.gettempdir(), 'qatest.log')
return engine.run_calc(job_id, oqparam, 'error', logfile, exports)
def run_job(cfg, exports='xml,csv', hazard_calculation_id=None, **params):
"""
Given the path to a job config file and a hazard_calculation_id
or a output, run the job.
:returns: a calculator object
"""
job_id, oqparam = engine.job_from_file(cfg, 'openquake', 'error', [],
hazard_calculation_id, **params)
logfile = os.path.join(tempfile.gettempdir(), 'qatest.log')
return engine.run_calc(job_id, oqparam, 'error', logfile, exports)
def test_job_from_file(self):
# make a hazard job
haz_cfg = helpers.get_data_path('event_based_hazard/job.ini')
haz_job = engine.job_from_file(haz_cfg, 'test_user')
# make a fake Output
out = models.Output.objects.create(oq_job=haz_job,
display_name='fake',
output_type='gmf')
# make a risk job
risk_cfg = helpers.get_data_path('event_based_risk/job.ini')
with mock.patch.object(logs.LOG, 'warn') as warn:
risk_job = engine.job_from_file(risk_cfg,
'another_user',
hazard_output_id=out.id)
# make sure a warning is printed because you are using a hazard
# generated by a different user
self.assertEqual(
warn.call_args[0],
('You are using a hazard calculation ran by %s', 'test_user'))
with mock.patch.object(logs.LOG, 'warn') as warn:
risk_job = engine.job_from_file(risk_cfg,
'test_user',
hazard_output_id=out.id,
quantile_loss_curves='0.1 0.2')
# make sure a warning is printed because you are using
# quantile_loss_curves with a single hazard output
self.assertEqual(
warn.call_args[0][0],
'quantile_loss_curves is on, but you passed a single hazard '
'output: the statistics will not be computed')
# make sure the hazard job is associated correctly
self.assertEqual(risk_job.hazard_calculation.id, haz_job.id)
def submit_job(job_ini,
user_name,
hazard_job_id=None,
loglevel=DEFAULT_LOG_LEVEL,
logfile=None,
exports=''):
"""
Create a job object from the given job.ini file in the job directory
and submit it to the job queue. Returns the job ID.
"""
job_id, oqparam = engine.job_from_file(job_ini, user_name, hazard_job_id)
fut = executor.submit(engine.run_calc, job_id, oqparam, loglevel, logfile,
exports, hazard_job_id)
return job_id, fut
def get_job(cfg, username="******", hazard_calculation_id=None,
hazard_output_id=None, **extras):
"""
Given a path to a config file and a hazard_calculation_id
(or, alternatively, a hazard_output_id, create a
:class:`openquake.engine.db.models.OqJob` object for a risk calculation.
"""
if hazard_output_id and not hazard_calculation_id:
hazard_calculation_id = models.Output.objects.get(
pk=hazard_output_id).oq_job.id
return engine.job_from_file(
cfg, username, 'error', [],
hazard_calculation_id=hazard_calculation_id,
hazard_output_id=hazard_output_id, **extras)
def get_job(cfg, username="******", hazard_calculation_id=None,
hazard_output_id=None, **extras):
"""
Given a path to a config file and a hazard_calculation_id
(or, alternatively, a hazard_output_id, create a
:class:`openquake.engine.db.models.OqJob` object for a risk calculation.
"""
if hazard_output_id and not hazard_calculation_id:
hazard_calculation_id = models.Output.objects.get(
pk=hazard_output_id).oq_job.id
return engine.job_from_file(
cfg, username, 'error', [],
hazard_calculation_id=hazard_calculation_id,
hazard_output_id=hazard_output_id, **extras)
def submit_job(job_ini, user_name, hazard_job_id=None):
"""
Create a job object from the given job.ini file in the job directory
and run it in a new process. Returns the job ID and PID.
"""
job_id, oq = engine.job_from_file(job_ini, user_name, hazard_job_id)
pik = pickle.dumps(oq, protocol=0) # human readable protocol
code = RUNCALC % dict(job_id=job_id, hazard_job_id=hazard_job_id, pik=pik)
tmp_py = writetmp(code, suffix='.py')
# print(code, tmp_py) # useful when debugging
devnull = getattr(subprocess, 'DEVNULL', None) # defined in Python 3
popen = subprocess.Popen([sys.executable, tmp_py],
stdin=devnull, stdout=devnull, stderr=devnull)
threading.Thread(target=popen.wait).start()
return job_id, popen.pid
def test(self):
# check that if risk models are provided, then the sites
# and the imls are got from there
cfg = helpers.get_data_path('classical_job-sd-imt.ini')
job = engine.job_from_file(cfg, helpers.default_user())
job.is_running = True
job.save()
calc = calculators(job)
calc.parse_risk_model()
self.assertEqual(['PGA'], list(calc.oqparam.imtls))
self.assertEqual(3, calc.job.exposuremodel.exposuredata_set.count())
return job
def test(self):
# check that if risk models are provided, then the sites
# and the imls are got from there
cfg = helpers.get_data_path('classical_job-sd-imt.ini')
job = engine.job_from_file(cfg, helpers.default_user())
job.is_running = True
job.save()
calc = calculators(job)
calc.parse_risk_model()
self.assertEqual(['PGA'], list(calc.oqparam.imtls))
self.assertEqual(3, calc.job.exposuremodel.exposuredata_set.count())
return job
def submit_job(job_ini, username, hazard_job_id=None):
"""
Create a job object from the given job.ini file in the job directory
and run it in a new process. Returns the job ID and PID.
"""
job_id, oq = engine.job_from_file(job_ini, username, hazard_job_id)
pik = pickle.dumps(oq, protocol=0) # human readable protocol
code = RUNCALC % dict(job_id=job_id, hazard_job_id=hazard_job_id, pik=pik,
username=username)
tmp_py = gettemp(code, suffix='.py')
# print(code, tmp_py) # useful when debugging
devnull = subprocess.DEVNULL
popen = subprocess.Popen([sys.executable, tmp_py],
stdin=devnull, stdout=devnull, stderr=devnull)
threading.Thread(target=popen.wait).start()
logs.dbcmd('update_job', job_id, {'pid': popen.pid})
return job_id, popen.pid
def test(self):
cfg = helpers.get_data_path('event_based_hazard/job.ini')
job = engine.job_from_file(cfg, 'test_user')
with tempfile.NamedTemporaryFile() as temp:
with self.assertRaises(ZeroDivisionError), mock.patch(
'openquake.engine.engine._do_run_calc', lambda *args: 1/0
), mock.patch('openquake.engine.engine.cleanup_after_job',
lambda job: None):
engine.run_calc(job, 'info', temp.name, exports=[])
logged = open(temp.name).read()
# make sure the real error has been logged
self.assertIn('integer division or modulo by zero', logged)
# also check the spurious cleanup error
self.assertIn('TypeError: <lambda>() got an unexpected keyword '
"argument 'terminate'", logged)
def get_job(cfg, username="******", hazard_calculation_id=None,
hazard_output_id=None):
"""
Given a path to a config file and a hazard_calculation_id
(or, alternatively, a hazard_output_id, create a
:class:`openquake.engine.db.models.OqJob` object for a risk calculation.
"""
if hazard_calculation_id is None and hazard_output_id is None:
return engine.job_from_file(cfg, username, 'error', [])
job = engine.prepare_job(username)
params = vars(readini.parse_config(
open(cfg), hazard_calculation_id, hazard_output_id))
risk_calc = engine.create_calculation(models.RiskCalculation, params)
risk_calc = models.RiskCalculation.objects.get(id=risk_calc.id)
job.risk_calculation = risk_calc
job.save()
return job
def test(self):
# check that if risk models are provided, then the sites
# and the imls are got from there
cfg = helpers.get_data_path('classical_job-sd-imt.ini')
job = engine.job_from_file(cfg, helpers.default_user())
job.is_running = True
job.save()
haz_calc = job.get_oqparam()
calc = get_calculator_class('hazard', haz_calc.calculation_mode)(job)
calc.parse_risk_models()
self.assertEqual(['PGA'],
list(calc.hc.intensity_measure_types_and_levels))
self.assertEqual(3, calc.job.exposuremodel.exposuredata_set.count())
return job
def submit_job(job_ini, username, hazard_job_id=None):
"""
Create a job object from the given job.ini file in the job directory
and run it in a new process. Returns the job ID and PID.
"""
job_id = logs.init('job')
oq = engine.job_from_file(
job_ini, job_id, username, hazard_calculation_id=hazard_job_id)
pik = pickle.dumps(oq, protocol=0) # human readable protocol
code = RUNCALC % dict(job_id=job_id, hazard_job_id=hazard_job_id, pik=pik,
username=username)
tmp_py = gettemp(code, suffix='.py')
# print(code, tmp_py) # useful when debugging
devnull = subprocess.DEVNULL
popen = subprocess.Popen([sys.executable, tmp_py],
stdin=devnull, stdout=devnull, stderr=devnull)
threading.Thread(target=popen.wait).start()
logs.dbcmd('update_job', job_id, {'pid': popen.pid})
return job_id, popen.pid
def pre_execute(job_ini):
"""
Run a hazard calculation, but stops it immediately after the
pre_execute phase. In this way it is possible to determine
the input_weight and output_weight of the calculation without
running it.
"""
job = job_from_file(job_ini, getpass.getuser(), 'info', [])
calc_mode = job.hazard_calculation.calculation_mode
calculator = get_calculator_class('hazard', calc_mode)(job)
handler = LogStreamHandler(job)
logging.root.addHandler(handler)
logs.set_level('info')
t0 = time.time()
try:
calculator.pre_execute()
finally:
duration = time.time() - t0
logs.LOG.info('Pre_execute time: %s s', duration)
logging.root.removeHandler(handler)
def run_jobs(job_inis, log_level='info', log_file=None, exports='',
username=getpass.getuser(), **kw):
"""
Run jobs using the specified config file and other options.
:param str job_inis:
A list of paths to .ini files.
:param str log_level:
'debug', 'info', 'warn', 'error', or 'critical'
:param str log_file:
Path to log file.
:param exports:
A comma-separated string of export types requested by the user.
:param username:
Name of the user running the job
:param kw:
Extra parameters like hazard_calculation_id and calculation_mode
"""
dist = parallel.oq_distribute()
jobparams = []
for job_ini in job_inis:
# NB: the logs must be initialized BEFORE everything
job_id = logs.init('job', getattr(logging, log_level.upper()))
with logs.handle(job_id, log_level, log_file):
oqparam = eng.job_from_file(os.path.abspath(job_ini), job_id,
username, **kw)
if (not jobparams and 'csm_cache' not in kw
and 'hazard_calculation_id' not in kw):
kw['hazard_calculation_id'] = job_id
jobparams.append((job_id, oqparam))
jobarray = len(jobparams) > 1 and 'csm_cache' in kw
try:
eng.poll_queue(job_id, poll_time=15)
# wait for an empty slot or a CTRL-C
except BaseException:
# the job aborted even before starting
for job_id, oqparam in jobparams:
logs.dbcmd('finish', job_id, 'aborted')
return jobparams
else:
for job_id, oqparam in jobparams:
dic = {'status': 'executing', 'pid': eng._PID}
if jobarray:
dic['hazard_calculation_id'] = jobparams[0][0]
logs.dbcmd('update_job', job_id, dic)
try:
if dist == 'zmq' and config.zworkers['host_cores']:
logging.info('Asking the DbServer to start the workers')
logs.dbcmd('zmq_start') # start the zworkers
logs.dbcmd('zmq_wait') # wait for them to go up
allargs = [(job_id, oqparam, exports, log_level, log_file)
for job_id, oqparam in jobparams]
if jobarray:
with start_many(eng.run_calc, allargs):
pass
else:
for args in allargs:
eng.run_calc(*args)
finally:
if dist == 'zmq' and config.zworkers['host_cores']:
logging.info('Stopping the zworkers')
logs.dbcmd('zmq_stop')
elif dist.startswith('celery'):
eng.celery_cleanup(config.distribution.terminate_workers_on_revoke)
return jobparams