def test_markAdoptedSets():
# Set's.
fus = osim.FunctionSet()
fu1 = osim.Constant()
fus.adoptAndAppend(fu1)
del fus
del fu1
s = osim.ScaleSet()
o = osim.Scale()
s.adoptAndAppend(o)
del s
del o
s = osim.ControlSet()
o = osim.ControlLinear()
s.adoptAndAppend(o)
del s
del o
s = osim.BodyScaleSet()
o = osim.BodyScale()
s.adoptAndAppend(o)
del s
del o
s = osim.PathPointSet()
o = osim.PathPoint()
s.adoptAndAppend(o)
del s
del o
s = osim.IKTaskSet()
o = osim.IKMarkerTask()
s.adoptAndAppend(o)
del s
del o
s = osim.MarkerPairSet()
o = osim.MarkerPair()
s.adoptAndAppend(o)
del s
del o
s = osim.MeasurementSet()
o = osim.Measurement()
s.adoptAndAppend(o)
del s
del o
s = osim.FrameSet()
o = osim.Body()
s.adoptAndAppend(o)
del s
del o
s = osim.ForceSet()
o = osim.CoordinateLimitForce()
s.adoptAndAppend(o)
del s
del o
s = osim.ForceSet()
o = osim.SpringGeneralizedForce()
s.append(o)
s = osim.ProbeSet()
o = osim.Umberger2010MuscleMetabolicsProbe()
s.adoptAndAppend(o)
del s
del o
a = osim.Model()
body = osim.Body('body',
1.0,
osim.Vec3(0, 0, 0),
osim.Inertia(0, 0, 0)
)
loc_in_parent = osim.Vec3(0, -0, 0)
orient_in_parent = osim.Vec3(0, 0, 0)
loc_in_body = osim.Vec3(0, 0, 0)
orient_in_body = osim.Vec3(0, 0, 0)
joint = osim.WeldJoint("weld_joint",
a.getGround(),
loc_in_parent, orient_in_parent,
body,
loc_in_body, orient_in_parent)
a.addBody(body)
constr = osim.ConstantDistanceConstraint()
constr.setBody1ByName("ground")
constr.setBody1PointLocation(osim.Vec3(0, 0, 0))
constr.setBody2ByName("body")
constr.setBody2PointLocation(osim.Vec3(1, 0, 0))
constr.setConstantDistance(1)
a.addConstraint(constr)
#Set generic model path
genModelPath = '..\\..\\OpensimModel'
#Set generic model file
genModelFileName = genModelPath+'\\LaiArnold2017_refined_Fukuchi2017-running.osim'
#Add model geometry to search paths
osim.ModelVisualizer.addDirToGeometrySearchPaths(genModelPath+'\\Geometry')
#Create the measurement set object for later use
measurementSetObject = osim.OpenSimObject.makeObjectFromFile('..\\OpensimModel\\scaleMeasurementSet_Fukuchi2017-running.xml')
measurementSet = osim.MeasurementSet.safeDownCast(measurementSetObject)
#Set the scale task set
scaleTaskSet = osim.IKTaskSet('..\\OpensimModel\\scaleTasks_Fukuchi2017-running.xml')
#Set scale order
scaleOrder = osim.ArrayStr()
scaleOrder.set(0,'measurements')
#Set IK task set
ikTaskSet = osim.IKTaskSet('..\\OpensimModel\\ikTasks_Fukuchi2017-running.xml')
#Set up a list of markers once flattened to keep
#This mainly gets rid of the random ASY markers
markersFlatList = ['L.ASIS_1','L.ASIS_2','L.ASIS_3',
'L.Heel.Bottom_1','L.Heel.Bottom_2','L.Heel.Bottom_3',
'L.Heel.Lateral_1','L.Heel.Lateral_2','L.Heel.Lateral_3',
'L.Heel.Top_1','L.Heel.Top_2','L.Heel.Top_3',
'L.Iliac.Crest_1','L.Iliac.Crest_2','L.Iliac.Crest_3',
def test_markAdoptedSets():
# Set's.
fus = osim.FunctionSet()
fu1 = osim.Constant()
fus.adoptAndAppend(fu1)
del fus
del fu1
gs = osim.GeometrySet()
dg = osim.DisplayGeometry()
gs.adoptAndAppend(dg)
del gs
del dg
s = osim.ScaleSet()
o = osim.Scale()
s.adoptAndAppend(o)
del s
del o
s = osim.ForceSet()
o = osim.BushingForce()
s.adoptAndAppend(o)
del s
del o
cs = osim.ControllerSet()
csc = osim.PrescribedController()
cs.adoptAndAppend(csc)
del cs
del csc
s = osim.ContactGeometrySet()
o = osim.ContactHalfSpace()
s.adoptAndAppend(o)
del s
del o
s = osim.AnalysisSet()
o = osim.MuscleAnalysis()
s.adoptAndAppend(o)
del s
del o
s = osim.ControlSet()
o = osim.ControlLinear()
s.adoptAndAppend(o)
del s
del o
s = osim.MarkerSet()
o = osim.Marker()
s.adoptAndAppend(o)
del s
del o
s = osim.BodySet()
o = osim.Body()
s.adoptAndAppend(o)
del s
del o
s = osim.BodyScaleSet()
o = osim.BodyScale()
s.adoptAndAppend(o)
del s
del o
s = osim.CoordinateSet()
o = osim.Coordinate()
s.adoptAndAppend(o)
del s
del o
s = osim.JointSet()
o = osim.BallJoint()
s.adoptAndAppend(o)
del s
del o
s = osim.PathPointSet()
o = osim.PathPoint()
s.adoptAndAppend(o)
del s
del o
s = osim.IKTaskSet()
o = osim.IKMarkerTask()
s.adoptAndAppend(o)
del s
del o
s = osim.MarkerPairSet()
o = osim.MarkerPair()
s.adoptAndAppend(o)
del s
del o
s = osim.MeasurementSet()
o = osim.Measurement()
s.adoptAndAppend(o)
del s
del o
# TODO
# s = osim.ProbeSet()
# o = osim.Umberger2010MuscleMetabolicsProbe()
# s.adoptAndAppend(o)
# del s
# del o
s = osim.ConstraintSet()
a = osim.Model()
body = osim.Body('body', 1.0, osim.Vec3(0, 0, 0), osim.Inertia(0, 0, 0))
loc_in_parent = osim.Vec3(0, -0, 0)
orient_in_parent = osim.Vec3(0, 0, 0)
loc_in_body = osim.Vec3(0, 0, 0)
orient_in_body = osim.Vec3(0, 0, 0)
joint = osim.WeldJoint("weld_joint", a.getGroundBody(), loc_in_parent,
orient_in_parent, body, loc_in_body,
orient_in_parent)
a.addBody(body)
constr = osim.ConstantDistanceConstraint()
constr.setBody1ByName("ground")
constr.setBody1PointLocation(osim.Vec3(0, 0, 0))
constr.setBody2ByName("body")
constr.setBody2PointLocation(osim.Vec3(1, 0, 0))
constr.setConstantDistance(1)
s.adoptAndAppend(constr)
scaleTool = osim.ScaleTool()
#Set participant mass (64.3kg)
scaleTool.setSubjectMass(64.3)
#Set generic model file
genModelFileName = os.getcwd()+'\\pfjLoading_GenericOsimModel_LaiArnold.osim'
scaleTool.getGenericModelMaker().setModelFileName(genModelFileName)
#Set the measurement set
measurementSetObject = osim.OpenSimObject.makeObjectFromFile('scaleMeasurementSet.xml')
measurementSet = osim.MeasurementSet.safeDownCast(measurementSetObject)
scaleTool.getModelScaler().setMeasurementSet(measurementSet)
#Set scale tasks
taskSet = osim.IKTaskSet('scaleTasks.xml')
for k in range(0,taskSet.getSize()-1):
scaleTool.getMarkerPlacer().getIKTaskSet().adoptAndAppend(taskSet.get(k))
#Set marker file
#Add the virtual markers and create a new .trc file to use in scaling
osimHelper.addVirtualMarkersStatic('static.trc','staticVirtualMarkers.trc')
#Place in scale tool
scaleTool.getMarkerPlacer().setMarkerFileName('staticVirtualMarkers.trc')
scaleTool.getModelScaler().setMarkerFileName('staticVirtualMarkers.trc')
#Set options
scaleTool.getModelScaler().setPreserveMassDist(True)
scaleOrder = osim.ArrayStr(); scaleOrder.set(0,'measurements')