remember=True,
help="Output file. Leave empty for console ouptut.",
default="",
name="Output File",
filetypes=[("All output formats",
"*.xlsx;*.xls;*.csv;*.tsv;*.txt"),
("Excel", "*.xlsx"), ("Excel2003", "*.xls"),
("CSV", "*.csv"), ("TSV", "*.tsv"),
("Text", "*.txt")])
parser.add_option_group(advanced)
opt = None
while True:
if 'exit' in error_kwargs:
try:
opt, args = parser.parse_args(opts=opt)
except UserCancelledError:
sys.exit(0)
else:
opt, args = parser.parse_args()
break
progress = None
if not opt.output:
opt.quiet = True
if opt.maxreads == None:
opt.maxreads = 1e+20
progress = ProgressText(quiet=opt.quiet)
from dataset import XLSFileTable, CSVFileTable, TSVFileTable, XLSXFileTable, TXTFileTable, BEDFile, VCFFile
advanced.add_option("-q", "--quiet", action="store_true", dest="quiet", default=False, remember=True,
help="Quiet.", name="Quiet")
advanced.add_option("-d", "--debug", action="store_true", dest="debug", default=False, remember=True,
help="Debug.", name="Debug")
parser.add_option("-o", "--output", type="savefile", dest="output", remember=True,
help="Output file. Leave empty for console ouptut.", default="",
name="Output File", filetypes=[("All output formats", "*.xlsx;*.xls;*.csv;*.tsv;*.txt"),
("Excel", "*.xlsx"), ("Excel2003", "*.xls"),
("CSV", "*.csv"), ("TSV", "*.tsv"), ("Text", "*.txt")])
parser.add_option_group(advanced)
opt = None
while True:
if 'exit' in error_kwargs:
try:
opt, args = parser.parse_args(opts=opt)
except UserCancelledError:
sys.exit(0)
else:
opt, args = parser.parse_args()
break
progress = None
if not opt.output:
opt.quiet = True
if opt.maxreads == None:
opt.maxreads = 1e+20
progress = ProgressText(quiet=opt.quiet)
from dataset import XLSFileTable, CSVFileTable, TSVFileTable, XLSXFileTable, TXTFileTable, BEDFile, VCFFile
