def __init__(self, server_file, hostname, username, password, *args,
**kwargs):
self.servers_info = {}
if server_file is not None: # read hostname-file
host_names_and_paths_array = load_table_from_text_file(
server_file, comment='#')[0]
passw = None
for i in range(host_names_and_paths_array.shape[0]):
self.servers_info[host_names_and_paths_array[i, 0]] = {
'username': host_names_and_paths_array[i, 1],
'opus_path': host_names_and_paths_array[i, 2],
'communication_path_root': host_names_and_paths_array[i,
3],
'number_of_processes': int(host_names_and_paths_array[i,
4])
}
previous_passw = None
if (host_names_and_paths_array[i, 0] <> 'localhost'):
default = ''
if passw is not None:
default = ' [previous password]'
previous_passw = passw
passw = getpass.getpass(
'Password for %s@%s%s:' %
(self.servers_info[host_names_and_paths_array[i, 0]]
['username'], host_names_and_paths_array[i,
0], default))
if len(passw) == 0:
passw = previous_passw
self.servers_info[host_names_and_paths_array[
i, 0]]['password'] = passw
else:
self.servers_info[host_names_and_paths_array[
i, 0]]['password'] = None
else:
self.servers_info[hostname] = {
'username': username,
'opus_path': self.remote_opus_path,
'communication_path_root': self.remote_communication_path_root,
'number_of_processes': 1,
'password': password
}
for server in self.servers_info.keys():
self.servers_info[server][
'python_command'] = self.python_commands.get(
server, self.python_command)
self.servers_info[server]['running'] = 0 # 0 processes are running
RemoteRun.__init__(self, hostname, username, password, *args, **kwargs)
def __init__(self, server_file, hostname, username, password, *args, **kwargs):
self.servers_info = {}
if server_file is not None: # read hostname-file
host_names_and_paths_array = load_table_from_text_file(server_file, comment='#')[0]
passw = None
for i in range(host_names_and_paths_array.shape[0]):
self.servers_info[host_names_and_paths_array[i,0]] = {
'username': host_names_and_paths_array[i,1],
'opus_path': host_names_and_paths_array[i,2],
'communication_path_root': host_names_and_paths_array[i,3],
'number_of_processes': int(host_names_and_paths_array[i,4])}
previous_passw = None
if (host_names_and_paths_array[i,0] <> 'localhost'):
default = ''
if passw is not None:
default = ' [previous password]'
previous_passw = passw
passw = getpass.getpass('Password for %s@%s%s:' % (
self.servers_info[host_names_and_paths_array[i,0]]['username'],
host_names_and_paths_array[i,0], default))
if len(passw) == 0:
passw = previous_passw
self.servers_info[host_names_and_paths_array[i,0]]['password'] = passw
else:
self.servers_info[host_names_and_paths_array[i,0]]['password'] = None
else:
self.servers_info[hostname] = {
'username': username,
'opus_path': self.remote_opus_path,
'communication_path_root': self.remote_communication_path_root,
'number_of_processes': 1,
'password': password
}
for server in self.servers_info.keys():
self.servers_info[server]['python_command'] = self.python_commands.get(server, self.python_command)
self.servers_info[server]['running'] = 0 # 0 processes are running
RemoteRun.__init__(self, hostname, username, password, *args, **kwargs)
def read_run_id_file(self, filename):
# filename is a file with a tuple (run_id, year, hostname) per row
content = load_table_from_text_file(filename, convert_to_float=False)[0]
for run_id, year, server in content:
self.run_ids_dict[int(run_id)] = (int(year), server)
def plot_correlation_diagnose(filename):
from opus_core.plot_functions import plot_matplot
data, coef_names = load_table_from_text_file(filename,
convert_to_float=True,
header=True)
plot_matplot(absolute(data), xlabels=coef_names, ylabels=coef_names)
def plot_utility_diagnose(filename):
from opus_core.plot_functions import plot_barchart
data, coef_names = load_table_from_text_file(filename,
convert_to_float=True,
header=True)
plot_barchart(data[2, :], labels=coef_names)
def plot_correlation_diagnose(filename):
from opus_core.plot_functions import plot_matplot
data, coef_names = load_table_from_text_file(filename, convert_to_float=True, header=True)
plot_matplot(absolute(data), xlabels = coef_names, ylabels=coef_names)
def plot_utility_diagnose(filename):
from opus_core.plot_functions import plot_barchart
data, coef_names = load_table_from_text_file(filename, convert_to_float=True, header=True)
plot_barchart(data[2,:], labels = coef_names)
def read_run_id_file(self, filename):
# filename is a file with a tuple (run_id, year, hostname) per row
content = load_table_from_text_file(filename,
convert_to_float=False)[0]
for run_id, year, server in content:
self.run_ids_dict[int(run_id)] = (int(year), server)
