def __init__(self, identifier_strategy, create_strategy):
self.identifier_strategy = identifier_strategy
self.create_strategy = create_strategy
self.bio_crosswalker = BioCrosswalk(identifier_strategy, create_strategy)
self.affiliations_crosswalker = AffiliationsCrosswalk(identifier_strategy, create_strategy)
self.funding_crosswalker = FundingCrosswalk(identifier_strategy, create_strategy)
self.works_crosswalker = WorksCrosswalk(identifier_strategy, create_strategy)
def setUp(self):
self.graph = Graph(namespace_manager=ns.ns_manager)
self.person_uri = ns.D["test"]
self.create_strategy = SimpleCreateEntitiesStrategy(
HashIdentifierStrategy(), person_uri=self.person_uri)
self.crosswalker = AffiliationsCrosswalk(
identifier_strategy=self.create_strategy,
create_strategy=self.create_strategy)
class PersonCrosswalk():
def __init__(self, identifier_strategy, create_strategy):
self.identifier_strategy = identifier_strategy
self.create_strategy = create_strategy
self.bio_crosswalker = BioCrosswalk(identifier_strategy, create_strategy)
self.affiliations_crosswalker = AffiliationsCrosswalk(identifier_strategy, create_strategy)
self.funding_crosswalker = FundingCrosswalk(identifier_strategy, create_strategy)
self.works_crosswalker = WorksCrosswalk(identifier_strategy, create_strategy)
def crosswalk(self, orcid_id, person_uri, person_class=None, confirmed_orcid_id=False):
# Create an RDFLib Graph
graph = Graph(namespace_manager=ns.ns_manager)
# 0000-0003-3441-946X
clean_orcid_id = clean_orcid(orcid_id)
orcid_profile = fetch_orcid_profile(clean_orcid_id)
# Determine the class to use for the person
person_clazz = FOAF.Person
if person_class:
person_clazz = getattr(VIVO, person_class)
# ORCID
PersonCrosswalk._add_orcid_id(person_uri, clean_orcid_id, graph, confirmed_orcid_id)
self.bio_crosswalker.crosswalk(orcid_profile, person_uri, graph, person_class=person_clazz)
self.works_crosswalker.crosswalk(orcid_profile, person_uri, graph)
self.affiliations_crosswalker.crosswalk(orcid_profile, person_uri, graph)
self.funding_crosswalker.crosswalk(orcid_profile, person_uri, graph)
return graph, orcid_profile, person_uri
@staticmethod
def _add_orcid_id(person_uri, orcid_id, graph, confirmed):
orcid_id_uriref = URIRef("http://orcid.org/%s" % orcid_id)
graph.add((person_uri, VIVO.orcidId, orcid_id_uriref))
graph.add((orcid_id_uriref, RDF.type, OWL.Thing))
if confirmed:
graph.add((orcid_id_uriref, VIVO.confirmedOrcidId, person_uri))
class TestAffiliations(TestCase):
def setUp(self):
self.graph = Graph(namespace_manager=ns.ns_manager)
self.person_uri = ns.D["test"]
self.create_strategy = SimpleCreateEntitiesStrategy(HashIdentifierStrategy(), person_uri=self.person_uri)
self.crosswalker = AffiliationsCrosswalk(identifier_strategy=self.create_strategy,
create_strategy=self.create_strategy)
def test_no_activities(self):
orcid_profile = json.loads("""
{
"message-version": "1.2",
"orcid-profile": {
"orcid-activities": null
}
}
""")
self.crosswalker.crosswalk(orcid_profile, self.person_uri, self.graph)
self.assertEqual(0, len(self.graph))
def test_no_affiliations(self):
orcid_profile = json.loads("""
{
"message-version": "1.2",
"orcid-profile": {
"orcid-activities": {
"affiliations": null
}
}
}
""")
self.crosswalker.crosswalk(orcid_profile, self.person_uri, self.graph)
self.assertEqual(0, len(self.graph))
def test_no_education(self):
orcid_profile = json.loads("""
{
"message-version": "1.2",
"orcid-profile": {
"orcid-bio": {
"orcid-activities": {
"affiliations": {
"affiliation": [
{
"type": "EMPLOYMENT",
"department-name": "Gelman Library",
"role-title": "Science & Engineering Librarian",
"start-date": {
"year": {
"value": "2013"
},
"month": {
"value": "07"
},
"day": null
},
"end-date": null,
"organization": {
"name": "George Washington University",
"address": {
"city": "Washington",
"region": "DC",
"country": "US"
},
"disambiguated-organization": {
"disambiguated-organization-identifier": "8367",
"disambiguation-source": "RINGGOLD"
}
},
"source": {
"source-orcid": {
"value": null,
"uri": "http://orcid.org/0000-0002-4192-3392",
"path": "0000-0002-4192-3392",
"host": "orcid.org"
},
"source-client-id": null,
"source-name": {
"value": "Hope Lappen"
},
"source-date": {
"value": 1386877638912
}
},
"created-date": {
"value": 1386877638912
},
"last-modified-date": {
"value": 1386877750045
},
"visibility": "PUBLIC",
"put-code": "25495"
}
]
}
}
}
}
}
""")
self.crosswalker.crosswalk(orcid_profile, self.person_uri, self.graph)
self.assertEqual(0, len(self.graph))
def test_education(self):
orcid_profile = json.loads("""
{
"message-version": "1.2",
"orcid-profile": {
"orcid-activities": {
"affiliations": {
"affiliation": [
{
"type": "EDUCATION",
"department-name": "Neurosciences",
"role-title": "PhD",
"start-date": {
"year": {
"value": "1995"
},
"month" : {
"value" : "06"
},
"day" : {
"value" : "11"
}
},
"end-date": {
"year": {
"value": "1997"
},
"month" : {
"value" : "07"
},
"day" : {
"value" : "03"
}
},
"organization": {
"name": "Stanford University School of Medicine",
"address": {
"city": "Stanford",
"region": "California",
"country": "US"
},
"disambiguated-organization": null
},
"source": {
"source-orcid": {
"value": null,
"uri": "http://orcid.org/0000-0001-5109-3700",
"path": "0000-0001-5109-3700",
"host": "orcid.org"
},
"source-client-id": null,
"source-name": {
"value": "Laurel L Haak"
},
"source-date": {
"value": 1385568459467
}
},
"created-date": {
"value": 1385568459467
},
"last-modified-date": {
"value": 1406092743932
},
"visibility": "PUBLIC",
"put-code": "1006"
}
]
}
}
}
}
""")
self.crosswalker.crosswalk(orcid_profile, self.person_uri, self.graph)
self.assertTrue(bool(self.graph.query("""
ask where {
?awdgre a vivo:AwardedDegree .
?awdgre rdfs:label "PhD" .
?awdgre obo:RO_0002353 ?awdgreproc .
?awdgre vivo:assignedBy ?org .
?awdgre vivo:relates d:test, ?dgre .
?org a foaf:Organization .
?org rdfs:label "Stanford University School of Medicine" .
?org obo:RO_0001025 ?geo .
?geo rdfs:label "Stanford, California" .
?awdgreproc a vivo:EducationalProcess .
?awdgreproc obo:RO_0000057 ?org, d:test .
?awdgreproc vivo:dateTimeInterval ?awdgreprocint .
?awdgreproc vivo:departmentOrSchool "Neurosciences" .
?awdgreprocint a vivo:DateTimeInterval .
?awdgreprocint vivo:end ?awdgreprocintend .
?awdgreprocintend a vivo:DateTimeValue .
?awdgreprocintend rdfs:label "1997" .
?awdgreprocintend vivo:dateTime "1997-01-01T00:00:00"^^xsd:dateTime .
?awdgreprocintend vivo:dateTimePrecision vivo:yearPrecision .
?awdgreprocint vivo:start ?awdgreprocintstart .
?awdgreprocintstart a vivo:DateTimeValue .
?awdgreprocintstart rdfs:label "1995" .
?awdgreprocintstart vivo:dateTime "1995-01-01T00:00:00"^^xsd:dateTime .
?awdgreprocintstart vivo:dateTimePrecision vivo:yearPrecision .
}
""")))
def test_education_minimal(self):
orcid_profile = json.loads("""
{
"message-version": "1.2",
"orcid-profile": {
"orcid-activities": {
"affiliations": {
"affiliation": [
{
"type": "EDUCATION",
"department-name": null,
"start-date": null,
"end-date": null,
"organization": {
"name": "Stanford University School of Medicine",
"address": {
"city": "Stanford",
"region": "California",
"country": "US"
},
"disambiguated-organization": null
},
"source": {
"source-orcid": {
"value": null,
"uri": "http://orcid.org/0000-0001-5109-3700",
"path": "0000-0001-5109-3700",
"host": "orcid.org"
},
"source-client-id": null,
"source-name": {
"value": "Laurel L Haak"
},
"source-date": {
"value": 1385568459467
}
},
"created-date": {
"value": 1385568459467
},
"last-modified-date": {
"value": 1406092743932
},
"visibility": "PUBLIC",
"put-code": "1006"
}
]
}
}
}
}
""")
self.crosswalker.crosswalk(orcid_profile, self.person_uri, self.graph)
self.assertTrue(bool(self.graph.query("""
ask where {
?org a foaf:Organization .
?org rdfs:label "Stanford University School of Medicine" .
?org obo:RO_0001025 ?geo .
?geo rdfs:label "Stanford, California" .
?awdgreproc a vivo:EducationalProcess .
?awdgreproc obo:RO_0000057 ?org, d:test .
filter not exists {
?awdgreproc vivo:departmentOrSchool ?awdgredept .
}
}
""")))
def setUp(self):
self.graph = Graph(namespace_manager=ns.ns_manager)
self.person_uri = ns.D["test"]
self.create_strategy = SimpleCreateEntitiesStrategy(HashIdentifierStrategy(), person_uri=self.person_uri)
self.crosswalker = AffiliationsCrosswalk(identifier_strategy=self.create_strategy,
create_strategy=self.create_strategy)
class TestAffiliations(TestCase):
def setUp(self):
self.graph = Graph(namespace_manager=ns.ns_manager)
self.person_uri = ns.D["test"]
self.create_strategy = SimpleCreateEntitiesStrategy(
HashIdentifierStrategy(), person_uri=self.person_uri)
self.crosswalker = AffiliationsCrosswalk(
identifier_strategy=self.create_strategy,
create_strategy=self.create_strategy)
def test_no_activities(self):
orcid_profile = json.loads("""
{
"message-version": "1.2",
"orcid-profile": {
"orcid-activities": null
}
}
""")
self.crosswalker.crosswalk(orcid_profile, self.person_uri, self.graph)
self.assertEqual(0, len(self.graph))
def test_no_affiliations(self):
orcid_profile = json.loads("""
{
"message-version": "1.2",
"orcid-profile": {
"orcid-activities": {
"affiliations": null
}
}
}
""")
self.crosswalker.crosswalk(orcid_profile, self.person_uri, self.graph)
self.assertEqual(0, len(self.graph))
def test_no_education(self):
orcid_profile = json.loads("""
{
"message-version": "1.2",
"orcid-profile": {
"orcid-bio": {
"orcid-activities": {
"affiliations": {
"affiliation": [
{
"type": "EMPLOYMENT",
"department-name": "Gelman Library",
"role-title": "Science & Engineering Librarian",
"start-date": {
"year": {
"value": "2013"
},
"month": {
"value": "07"
},
"day": null
},
"end-date": null,
"organization": {
"name": "George Washington University",
"address": {
"city": "Washington",
"region": "DC",
"country": "US"
},
"disambiguated-organization": {
"disambiguated-organization-identifier": "8367",
"disambiguation-source": "RINGGOLD"
}
},
"source": {
"source-orcid": {
"value": null,
"uri": "http://orcid.org/0000-0002-4192-3392",
"path": "0000-0002-4192-3392",
"host": "orcid.org"
},
"source-client-id": null,
"source-name": {
"value": "Hope Lappen"
},
"source-date": {
"value": 1386877638912
}
},
"created-date": {
"value": 1386877638912
},
"last-modified-date": {
"value": 1386877750045
},
"visibility": "PUBLIC",
"put-code": "25495"
}
]
}
}
}
}
}
""")
self.crosswalker.crosswalk(orcid_profile, self.person_uri, self.graph)
self.assertEqual(0, len(self.graph))
def test_education(self):
orcid_profile = json.loads("""
{
"message-version": "1.2",
"orcid-profile": {
"orcid-activities": {
"affiliations": {
"affiliation": [
{
"type": "EDUCATION",
"department-name": "Neurosciences",
"role-title": "PhD",
"start-date": {
"year": {
"value": "1995"
},
"month" : {
"value" : "06"
},
"day" : {
"value" : "11"
}
},
"end-date": {
"year": {
"value": "1997"
},
"month" : {
"value" : "07"
},
"day" : {
"value" : "03"
}
},
"organization": {
"name": "Stanford University School of Medicine",
"address": {
"city": "Stanford",
"region": "California",
"country": "US"
},
"disambiguated-organization": null
},
"source": {
"source-orcid": {
"value": null,
"uri": "http://orcid.org/0000-0001-5109-3700",
"path": "0000-0001-5109-3700",
"host": "orcid.org"
},
"source-client-id": null,
"source-name": {
"value": "Laurel L Haak"
},
"source-date": {
"value": 1385568459467
}
},
"created-date": {
"value": 1385568459467
},
"last-modified-date": {
"value": 1406092743932
},
"visibility": "PUBLIC",
"put-code": "1006"
}
]
}
}
}
}
""")
self.crosswalker.crosswalk(orcid_profile, self.person_uri, self.graph)
self.assertTrue(
bool(
self.graph.query("""
ask where {
?awdgre a vivo:AwardedDegree .
?awdgre rdfs:label "PhD" .
?awdgre obo:RO_0002353 ?awdgreproc .
?awdgre vivo:assignedBy ?org .
?awdgre vivo:relates d:test, ?dgre .
?org a foaf:Organization .
?org rdfs:label "Stanford University School of Medicine" .
?org obo:RO_0001025 ?geo .
?geo rdfs:label "Stanford, California" .
?awdgreproc a vivo:EducationalProcess .
?awdgreproc obo:RO_0000057 ?org, d:test .
?awdgreproc vivo:dateTimeInterval ?awdgreprocint .
?awdgreproc vivo:departmentOrSchool "Neurosciences" .
?awdgreprocint a vivo:DateTimeInterval .
?awdgreprocint vivo:end ?awdgreprocintend .
?awdgreprocintend a vivo:DateTimeValue .
?awdgreprocintend rdfs:label "1997" .
?awdgreprocintend vivo:dateTime "1997-01-01T00:00:00"^^xsd:dateTime .
?awdgreprocintend vivo:dateTimePrecision vivo:yearPrecision .
?awdgreprocint vivo:start ?awdgreprocintstart .
?awdgreprocintstart a vivo:DateTimeValue .
?awdgreprocintstart rdfs:label "1995" .
?awdgreprocintstart vivo:dateTime "1995-01-01T00:00:00"^^xsd:dateTime .
?awdgreprocintstart vivo:dateTimePrecision vivo:yearPrecision .
}
""")))
def test_education_minimal(self):
orcid_profile = json.loads("""
{
"message-version": "1.2",
"orcid-profile": {
"orcid-activities": {
"affiliations": {
"affiliation": [
{
"type": "EDUCATION",
"department-name": null,
"start-date": null,
"end-date": null,
"organization": {
"name": "Stanford University School of Medicine",
"address": {
"city": "Stanford",
"region": "California",
"country": "US"
},
"disambiguated-organization": null
},
"source": {
"source-orcid": {
"value": null,
"uri": "http://orcid.org/0000-0001-5109-3700",
"path": "0000-0001-5109-3700",
"host": "orcid.org"
},
"source-client-id": null,
"source-name": {
"value": "Laurel L Haak"
},
"source-date": {
"value": 1385568459467
}
},
"created-date": {
"value": 1385568459467
},
"last-modified-date": {
"value": 1406092743932
},
"visibility": "PUBLIC",
"put-code": "1006"
}
]
}
}
}
}
""")
self.crosswalker.crosswalk(orcid_profile, self.person_uri, self.graph)
self.assertTrue(
bool(
self.graph.query("""
ask where {
?org a foaf:Organization .
?org rdfs:label "Stanford University School of Medicine" .
?org obo:RO_0001025 ?geo .
?geo rdfs:label "Stanford, California" .
?awdgreproc a vivo:EducationalProcess .
?awdgreproc obo:RO_0000057 ?org, d:test .
filter not exists {
?awdgreproc vivo:departmentOrSchool ?awdgredept .
}
}
""")))
class TestAffiliations(TestCase):
def setUp(self):
self.graph = Graph(namespace_manager=ns.ns_manager)
self.person_uri = ns.D["test"]
self.create_strategy = SimpleCreateEntitiesStrategy(
HashIdentifierStrategy(), person_uri=self.person_uri)
self.crosswalker = AffiliationsCrosswalk(
identifier_strategy=self.create_strategy,
create_strategy=self.create_strategy)
def test_no_affiliations(self):
orcid_profile = json.loads("""
{
"activities-summary": {
}
}
""")
self.crosswalker.crosswalk(orcid_profile, self.person_uri, self.graph)
self.assertEqual(0, len(self.graph))
def test_no_education(self):
orcid_profile = json.loads("""
{
"activities-summary": {
"educations": {
"education-summary": []
}
}
}
""")
self.crosswalker.crosswalk(orcid_profile, self.person_uri, self.graph)
self.assertEqual(0, len(self.graph))
def test_education(self):
orcid_profile = json.loads("""
{
"activities-summary": {
"educations": {
"last-modified-date": {
"value": 1486085029078
},
"education-summary": [
{
"created-date": {
"value": 1385568459467
},
"last-modified-date": {
"value": 1486085026897
},
"source": {
"source-orcid": {
"uri": "http://orcid.org/0000-0001-5109-3700",
"path": "0000-0001-5109-3700",
"host": "orcid.org"
},
"source-client-id": null,
"source-name": {
"value": "Laurel L Haak"
}
},
"department-name": "Neurosciences",
"role-title": "PhD",
"start-date": {
"year": {
"value": "1995"
},
"month": null,
"day": null
},
"end-date": {
"year": {
"value": "1997"
},
"month": null,
"day": null
},
"organization": {
"name": "Stanford University School of Medicine",
"address": {
"city": "Stanford",
"region": "California",
"country": "US"
},
"disambiguated-organization": null
},
"visibility": "PUBLIC",
"put-code": 1006,
"path": "/0000-0001-5109-3700/education/1006"
}
],
"path": "/0000-0001-5109-3700/educations"
}
}
}
""")
# Changed start date to 1995
self.crosswalker.crosswalk(orcid_profile, self.person_uri, self.graph)
self.assertTrue(
bool(
self.graph.query("""
ask where {
?awdgre a vivo:AwardedDegree .
?awdgre rdfs:label "PhD" .
?awdgre obo:RO_0002353 ?awdgreproc .
?awdgre vivo:assignedBy ?org .
?awdgre vivo:relates d:test, ?dgre .
?org a foaf:Organization .
?org rdfs:label "Stanford University School of Medicine" .
?org obo:RO_0001025 ?geo .
?geo rdfs:label "Stanford, California" .
?awdgreproc a vivo:EducationalProcess .
?awdgreproc obo:RO_0000057 ?org, d:test .
?awdgreproc vivo:dateTimeInterval ?awdgreprocint .
?awdgreproc vivo:departmentOrSchool "Neurosciences" .
?awdgreprocint a vivo:DateTimeInterval .
?awdgreprocint vivo:end ?awdgreprocintend .
?awdgreprocintend a vivo:DateTimeValue .
?awdgreprocintend rdfs:label "1997" .
?awdgreprocintend vivo:dateTime "1997-01-01T00:00:00"^^xsd:dateTime .
?awdgreprocintend vivo:dateTimePrecision vivo:yearPrecision .
?awdgreprocint vivo:start ?awdgreprocintstart .
?awdgreprocintstart a vivo:DateTimeValue .
?awdgreprocintstart rdfs:label "1995" .
?awdgreprocintstart vivo:dateTime "1995-01-01T00:00:00"^^xsd:dateTime .
?awdgreprocintstart vivo:dateTimePrecision vivo:yearPrecision .
}
""")))
def test_education_minimal(self):
orcid_profile = json.loads("""
{
"activities-summary": {
"educations": {
"last-modified-date": {
"value": 1486085029078
},
"education-summary": [
{
"created-date": {
"value": 1385568459467
},
"last-modified-date": {
"value": 1486085026897
},
"source": {
"source-orcid": {
"uri": "http://orcid.org/0000-0001-5109-3700",
"path": "0000-0001-5109-3700",
"host": "orcid.org"
},
"source-client-id": null,
"source-name": {
"value": "Laurel L Haak"
}
},
"department-name": null,
"role-title": "PhD",
"start-date": null,
"end-date": null,
"organization": {
"name": "Stanford University School of Medicine",
"address": {
"city": "Stanford",
"region": "California",
"country": "US"
},
"disambiguated-organization": null
},
"visibility": "PUBLIC",
"put-code": 1006,
"path": "/0000-0001-5109-3700/education/1006"
}
],
"path": "/0000-0001-5109-3700/educations"
}
}
}
""")
self.crosswalker.crosswalk(orcid_profile, self.person_uri, self.graph)
self.assertTrue(
bool(
self.graph.query("""
ask where {
?org a foaf:Organization .
?org rdfs:label "Stanford University School of Medicine" .
?org obo:RO_0001025 ?geo .
?geo rdfs:label "Stanford, California" .
?awdgreproc a vivo:EducationalProcess .
?awdgreproc obo:RO_0000057 ?org, d:test .
filter not exists {
?awdgreproc vivo:departmentOrSchool ?awdgredept .
}
}
""")))
class TestAffiliations(TestCase):
def setUp(self):
self.graph = Graph(namespace_manager=ns.ns_manager)
self.person_uri = ns.D["test"]
self.create_strategy = SimpleCreateEntitiesStrategy(HashIdentifierStrategy(), person_uri=self.person_uri)
self.crosswalker = AffiliationsCrosswalk(identifier_strategy=self.create_strategy,
create_strategy=self.create_strategy)
def test_no_affiliations(self):
orcid_profile = json.loads("""
{
"activities-summary": {
}
}
""")
self.crosswalker.crosswalk(orcid_profile, self.person_uri, self.graph)
self.assertEqual(0, len(self.graph))
def test_no_education(self):
orcid_profile = json.loads("""
{
"activities-summary": {
"educations": {
"education-summary": []
}
}
}
""")
self.crosswalker.crosswalk(orcid_profile, self.person_uri, self.graph)
self.assertEqual(0, len(self.graph))
def test_education(self):
orcid_profile = json.loads("""
{
"activities-summary": {
"educations": {
"last-modified-date": {
"value": 1486085029078
},
"education-summary": [
{
"created-date": {
"value": 1385568459467
},
"last-modified-date": {
"value": 1486085026897
},
"source": {
"source-orcid": {
"uri": "http://orcid.org/0000-0001-5109-3700",
"path": "0000-0001-5109-3700",
"host": "orcid.org"
},
"source-client-id": null,
"source-name": {
"value": "Laurel L Haak"
}
},
"department-name": "Neurosciences",
"role-title": "PhD",
"start-date": {
"year": {
"value": "1995"
},
"month": null,
"day": null
},
"end-date": {
"year": {
"value": "1997"
},
"month": null,
"day": null
},
"organization": {
"name": "Stanford University School of Medicine",
"address": {
"city": "Stanford",
"region": "California",
"country": "US"
},
"disambiguated-organization": null
},
"visibility": "PUBLIC",
"put-code": 1006,
"path": "/0000-0001-5109-3700/education/1006"
}
],
"path": "/0000-0001-5109-3700/educations"
}
}
}
""")
# Changed start date to 1995
self.crosswalker.crosswalk(orcid_profile, self.person_uri, self.graph)
self.assertTrue(bool(self.graph.query("""
ask where {
?awdgre a vivo:AwardedDegree .
?awdgre rdfs:label "PhD" .
?awdgre obo:RO_0002353 ?awdgreproc .
?awdgre vivo:assignedBy ?org .
?awdgre vivo:relates d:test, ?dgre .
?org a foaf:Organization .
?org rdfs:label "Stanford University School of Medicine" .
?org obo:RO_0001025 ?geo .
?geo rdfs:label "Stanford, California" .
?awdgreproc a vivo:EducationalProcess .
?awdgreproc obo:RO_0000057 ?org, d:test .
?awdgreproc vivo:dateTimeInterval ?awdgreprocint .
?awdgreproc vivo:departmentOrSchool "Neurosciences" .
?awdgreprocint a vivo:DateTimeInterval .
?awdgreprocint vivo:end ?awdgreprocintend .
?awdgreprocintend a vivo:DateTimeValue .
?awdgreprocintend rdfs:label "1997" .
?awdgreprocintend vivo:dateTime "1997-01-01T00:00:00"^^xsd:dateTime .
?awdgreprocintend vivo:dateTimePrecision vivo:yearPrecision .
?awdgreprocint vivo:start ?awdgreprocintstart .
?awdgreprocintstart a vivo:DateTimeValue .
?awdgreprocintstart rdfs:label "1995" .
?awdgreprocintstart vivo:dateTime "1995-01-01T00:00:00"^^xsd:dateTime .
?awdgreprocintstart vivo:dateTimePrecision vivo:yearPrecision .
}
""")))
def test_education_minimal(self):
orcid_profile = json.loads("""
{
"activities-summary": {
"educations": {
"last-modified-date": {
"value": 1486085029078
},
"education-summary": [
{
"created-date": {
"value": 1385568459467
},
"last-modified-date": {
"value": 1486085026897
},
"source": {
"source-orcid": {
"uri": "http://orcid.org/0000-0001-5109-3700",
"path": "0000-0001-5109-3700",
"host": "orcid.org"
},
"source-client-id": null,
"source-name": {
"value": "Laurel L Haak"
}
},
"department-name": null,
"role-title": "PhD",
"start-date": null,
"end-date": null,
"organization": {
"name": "Stanford University School of Medicine",
"address": {
"city": "Stanford",
"region": "California",
"country": "US"
},
"disambiguated-organization": null
},
"visibility": "PUBLIC",
"put-code": 1006,
"path": "/0000-0001-5109-3700/education/1006"
}
],
"path": "/0000-0001-5109-3700/educations"
}
}
}
""")
self.crosswalker.crosswalk(orcid_profile, self.person_uri, self.graph)
self.assertTrue(bool(self.graph.query("""
ask where {
?org a foaf:Organization .
?org rdfs:label "Stanford University School of Medicine" .
?org obo:RO_0001025 ?geo .
?geo rdfs:label "Stanford, California" .
?awdgreproc a vivo:EducationalProcess .
?awdgreproc obo:RO_0000057 ?org, d:test .
filter not exists {
?awdgreproc vivo:departmentOrSchool ?awdgredept .
}
}
""")))
