# 2) Use createByFasta
covid2.createByFASTA('./samples/sequence2.fasta')
# The path is relative to the directory in which it is run
# the program or can be an absolute path
# 3) Ready for instructions
covid2.printOrganism()
"""Export an organism to FASTA file"""
covid2.exportToFASTA()
"""Create organism from file JSON"""
# 1) Create an empty Organism
covid3 = Organism()
# 2) Use createByJSON
covid3.createByJSON('./samples/sequence1.json', 'organism', 'nc', 'sequence',
'description')
# We need the name of the collection, the name
# of the NC attribute, the name of the sequence attribute and
# the name of the description attribute in the json file.
# 3) Ready for instructions
covid3.printOrganism()
"""Export an organism to JSON file"""
covid3.exportToJSON("hola.json")
# The route of the output file it's optional for every export method
"""Create organism from file CLUSTAL"""
# 1) Create an empty Organism
covid4 = Organism()
# 2) Use createByCLUSTAL