def do_update(self):
self.prepare()
if not os.path.exists(os.path.join(SyncDB.DOWNLOAD_DIR(),"protein_atlas")):
util.unix("mkdir " + os.path.join(SyncDB.DOWNLOAD_DIR(),"protein_atlas"))
data = self.get_summary_expression_data(GPUtils.get_ensembl2gid_map(), "Ensembl") \
+ self.get_protein_class_data(GPUtils.get_ensembl2gid_map(), "Ensembl") \
+ self.get_subcellular_location() \
+ self.get_rna_tissue_category(GPUtils.get_ensembl2gid_map(), "Ensembl")
dff=pd.DataFrame(data);
reload(sys)
sys.setdefaultencoding('utf8')
dff['content']=dff['content'].map(lambda x: unicode(x).encode('utf-8'))
dff['content']=dff['content'].map(lambda x: x.replace('\r','').replace('\n','') if x!='nan' else '')
dff['tax_id']='9606'
dff.to_csv(self.fn_dest, index=False, sep=',');
from auxiliary import remove_auxiliary_files, remove_cache_files
from gutter import update_marks
from parsing import (BibTexParser, BiberParser, ChkTexParser, LaTexParser,
MakeGlossariesParser, MakeIndexParser, LaTexMkParser)
from tex import (find_file_to_typeset, find_tex_directives, find_tex_packages)
from tmprefs import Preferences
# -- Module Import ------------------------------------------------------------
try:
# Python 2
import sys
reload(sys)
sys.setdefaultencoding("utf-8")
except NameError:
# Python 3
pass
# -- Exit Codes ---------------------------------------------------------------
EXIT_SUCCESS = 0
EXIT_TEX_ENGINE_NOT_FOUND = 1
EXIT_DISCARD = 200
EXIT_SHOW_TOOL_TIP = 206
# -- Functions ----------------------------------------------------------------
def run_bibtex(filename, verbose=False):
#coding:utf8
from os import sys, system
import socket
from re import findall
from time import sleep
try:
import requests
except ImportError:
print "[!] Modul Requests tidak ditemukan [!]"
print "[!] pip install requests [!]"
sys.exit(0)
reload(sys)
sys.setdefaultencoding('utf8')
W = '\033[0m' # white (default)
R = '\033[31m' # red
G = '\033[1;32m' # green bold
O = '\033[33m' # orange
B = '\033[34m' # blue
P = '\033[35m' # purple
C = '\033[36m' # cyan
GR = '\033[37m' # gray
#LogFile
file = "/storage/emulated/0/ProxyLog.txt"
def slowprint(s):
system("clear")
print P+"Proxy Checker & Grab Proxy sslproxies.org"+W
for c in s + '\n':
sys.stdout.write(c)
sys.stdout.flush() # defeat buffering
sleep(2./90)
from urllib import quote # Python 2
from auxiliary import remove_auxiliary_files
from gutter import update_marks
from parsing import (BibTexParser, BiberParser, ChkTexParser, LaTexParser,
MakeGlossariesParser, MakeIndexParser, LaTexMkParser)
from tex import (find_file_to_typeset, find_tex_directives, find_tex_packages)
from tmprefs import Preferences
# -- Module Import ------------------------------------------------------------
try:
# Python 2
import sys
reload(sys)
sys.setdefaultencoding("utf-8")
except NameError:
# Python 3
pass
# -- Exit Codes ---------------------------------------------------------------
EXIT_SUCCESS = 0
EXIT_TEX_ENGINE_NOT_FOUND = 1
EXIT_DISCARD = 200
EXIT_SHOW_TOOL_TIP = 206
# -- Functions ----------------------------------------------------------------
def run_bibtex(filename, verbose=False):
import codecs
import datetime
import StringIO
import functools
import sae
from os import sys, path
from peewee import *
from flask import Flask, render_template, flash
from flask import request, redirect, url_for, Response
from flask.globals import session
from openpyxl import Workbook
# set default encoding
reload(sys)
sys.setdefaultencoding('utf8')
# seesion secret_key
SECRET_KEY = 'jianglin, secret!'
app = Flask(__name__)
app.config.from_object(__name__)
app.debug = False
# mysql database connection
db = MySQLDatabase(
user=sae.const.MYSQL_USER,
passwd=sae.const.MYSQL_PASS,
host=sae.const.MYSQL_HOST,
port=int(sae.const.MYSQL_PORT),
database=sae.const.MYSQL_DB,
charset='utf8')
