def testViewsFromSequences_03(self):
seq_a = seq.CreateSequence("A", "ABCD--GH")
seq_a.AttachView(self.ent.Select('rname=A,B,C,D,G,H'))
seq_b = seq.CreateSequence("B", "ABCD-FGH")
seq_b.AttachView(self.ent.Select('rname=A,B,C,D,F,G,H'))
a, b = seq.ViewsFromSequences(seq_a, seq_b)
string_a = ''.join([r.one_letter_code for r in a.residues])
string_b = ''.join([r.one_letter_code for r in b.residues])
self.assertEqual(string_a, 'ABCDGH')
self.assertEqual(string_b, 'ABCDGH')
def testViewsFromSequences_08(self):
seq_a = seq.CreateSequence("A", "A-C-E-G")
seq_a.AttachView(self.ent.Select('rname=A,C,E,G'))
seq_b = seq.CreateSequence("B", "-B-D-H-")
seq_b.AttachView(self.ent.Select('rname=B,D,H'))
a, b = seq.ViewsFromSequences(seq_a, seq_b)
string_a = ''.join([r.one_letter_code for r in a.residues])
string_b = ''.join([r.one_letter_code for r in b.residues])
self.assertEqual(string_a, '')
self.assertEqual(string_b, '')
def testViewsFromSequences_09(self):
seq_a = seq.CreateSequence("A", "B-D-FGH")
seq_a.AttachView(self.ent.Select('rname=A,B,D,F,G,H'))
seq_a.offset = 1
seq_b = seq.CreateSequence("B", "B-DEF-H")
seq_b.offset = 1
seq_b.AttachView(self.ent.Select('rname=A,B,D,E,F,H'))
a, b = seq.ViewsFromSequences(seq_a, seq_b)
string_a = ''.join([r.one_letter_code for r in a.residues])
string_b = ''.join([r.one_letter_code for r in b.residues])
self.assertEqual(string_a, 'BDFH')
self.assertEqual(string_b, 'BDFH')
