read('inTrees.phy') inTrees = var.trees var.trees = [] read('stMcmcCons.nex') read('mrpMajRuleConsTree.nex') read('mrpStrictConsTree.nex') var.trees[1].name = 'mrpMajRule' var.trees[2].name = 'mrpStrict' from p4.SuperTreeSupport import SuperTreeSupport print("%20s %6s %6s %6s %6s %6s" % (' ', 'S', 'P', 'Q', 'R', 'V')) for st in var.trees: sts = SuperTreeSupport(st, inTrees) sts.doSaveDecoratedTree = False sts.decoratedFilename = 'mytree.nex' sts.doSaveIndexTree = False sts.indexFilename = 'mytreeIndex.nex' sts.csvFilename = 'mytreeIndex.csv' sts.doDrawTree = False sts.verbose = 0 sts.superTreeSupport() print("%20s %6.2f %6.2f %6.2f %6.2f %6.2f" % (st.name, sts.S, sts.P, sts.Q, sts.R, sts.V))
read('inTrees.phy') inTrees = var.trees var.trees = [] read('stMcmcCons.nex') read('mrpMajRuleConsTree.nex') read('mrpStrictConsTree.nex') var.trees[1].name = 'mrpMajRule' var.trees[2].name = 'mrpStrict' from p4.SuperTreeSupport import SuperTreeSupport print "%20s %6s %6s %6s %6s %6s" % (' ', 'S', 'P', 'Q', 'R', 'V') for st in var.trees: sts = SuperTreeSupport(st, inTrees) sts.doSaveDecoratedTree = False sts.decoratedFilename='mytree.nex' sts.doSaveIndexTree=False sts.indexFilename='mytreeIndex.nex' sts.csvFilename='mytreeIndex.csv' sts.doDrawTree=False sts.verbose=0 sts.superTreeSupport() print "%20s %6.2f %6.2f %6.2f %6.2f %6.2f" % (st.name, sts.S, sts.P, sts.Q, sts.R, sts.V)