def test_valid_with_contractno_after_formatting_markup_as_first_element(
self):
sample = io.BytesIO(b"""
<article>
<front>
<article-meta>
<funding-group>
<award-group>
<funding-source>Brazilian Ministry of Health/Secretariat of Health Surveillance/Department of STD, AIDS and Viral Hepatitis</funding-source>
<award-id>2010/03107-2</award-id>
</award-group>
<funding-statement>Apoio financeiro: Fundacao de Amparo a Pesquisa do Estado de Sao Paulo (FAPESP). Processo 2010/03107-2. Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq).
</funding-statement>
</funding-group>
</article-meta>
</front>
<back>
<fn-group>
<fn fn-type="financial-disclosure">
<p><bold>Apoio financeiro:</bold> Fundacao de Amparo a Pesquisa do Estado de Sao
Paulo (FAPESP). Processo 2010/03107-2. Conselho Nacional de
Desenvolvimento Cientifico e Tecnologico (CNPq).</p>
</fn>
</fn-group>
</back>
</article>
""")
et = etree.parse(sample)
_, err_list = checks.funding_group((et, []))
self.assertEqual(len(err_list), 0)
def test_proposition_1_case_3(self):
"""
HasExplicitContract is False
HasFundingGroup is True
(HasExplicitContract <=> HasFundingGroup) is False
"""
sample = io.BytesIO(b"""
<article>
<front>
<article-meta>
<funding-group>
<award-group>
<funding-source>Brazilian Ministry of Health/Secretariat of Health Surveillance/Department of STD, AIDS and Viral Hepatitis</funding-source>
<award-id>CSV 234/07</award-id>
</award-group>
<funding-statement>This study was supported by the Brazilian Ministry of Health/Secretariat of Health Surveillance/Department of STD, AIDS and Viral Hepatitis, through the Project of International Technical Cooperation AD/BRA/03/H34 between the Brazilian Government and the United Nations Office on Drugs and Crime (Process CSV 234/07).</funding-statement>
</funding-group>
</article-meta>
</front>
<back>
<fn-group>
<fn id="fn1">
<p>This study was supported by the Brazilian Ministry of Health/Secretariat of Health Surveillance/Department of STD, AIDS and Viral Hepatitis, through the Project of International Technical Cooperation AD/BRA/03/H34 between the Brazilian Government and the United Nations Office on Drugs and Crime (Process CSV 234/07).</p>
</fn>
</fn-group>
</back>
</article>
""")
et = etree.parse(sample)
_, err_list = checks.funding_group((et, []))
self.assertEqual(len(err_list), 1)
self.assertTrue("'funding-group'" in err_list[0].message)
def test_valid_with_contractno_after_formatting_markup(self):
sample = io.BytesIO(b"""
<article>
<front>
<article-meta>
<funding-group>
<award-group>
<funding-source>Brazilian Ministry of Health/Secretariat of Health Surveillance/Department of STD, AIDS and Viral Hepatitis</funding-source>
<award-id>CSV 234/07</award-id>
</award-group>
<funding-statement>This study was supported by the Brazilian Ministry of Health/Secretariat of Health Surveillance/Department of STD, AIDS and Viral Hepatitis, through the Project of International Technical Cooperation AD/BRA/03/H34 between the Brazilian Government and the United Nations Office on Drugs and Crime (Process CSV 234/07).</funding-statement>
</funding-group>
</article-meta>
</front>
<back>
<ack>
<p>This study was supported by the <italic>Brazilian</italic> Ministry of Health/Secretariat of Health Surveillance/Department of STD, AIDS and Viral Hepatitis, through the Project of International Technical Cooperation AD/BRA/03/H34 between the Brazilian Government and the United Nations Office on Drugs and Crime (Process CSV 234/07).</p>
</ack>
</back>
</article>
""")
et = etree.parse(sample)
_, err_list = checks.funding_group((et, []))
self.assertEqual(len(err_list), 0)
def test_proposition_1_case_4(self):
"""
HasExplicitContract is False
HasFundingGroup is False
(HasExplicitContract <=> HasFundingGroup) is True
"""
sample = StringIO("""
<article>
<front>
<article-meta></article-meta>
</front>
<back>
<fn-group>
<fn id="fn1">
<p>This study was supported by the Brazilian Ministry of Health/Secretariat of Health Surveillance/Department of STD, AIDS and Viral Hepatitis, through the Project of International Technical Cooperation AD/BRA/03/H34 between the Brazilian Government and the United Nations Office on Drugs and Crime (Process CSV 234/07).</p>
</fn>
</fn-group>
</back>
</article>
""")
et = etree.parse(sample)
_, err_list = checks.funding_group((et, []))
self.assertEquals(len(err_list), 0)
def test_fn_p_and_awardid_with_no_content(self):
sample = io.BytesIO(b"""
<article>
<front>
<article-meta>
<funding-group>
<award-group>
<funding-source>Brazilian Ministry of Health/Secretariat of Health Surveillance/Department of STD, AIDS and Viral Hepatitis</funding-source>
<award-id/>
</award-group>
</funding-group>
</article-meta>
</front>
<back>
<fn-group>
<fn id="fn1" fn-type="financial-disclosure">
<p/>
</fn>
</fn-group>
</back>
</article>
""")
et = etree.parse(sample)
_, err_list = checks.funding_group((et, []))
self.assertEqual(len(err_list), 1)
self.assertTrue("'fn-group'" in err_list[0].message)
def test_proposition_1_case_1(self):
"""
HasExplicitContract is True
HasFundingGroup is True
(HasExplicitContract <=> HasFundingGroup) is True
"""
sample = os.path.join(SAMPLES_PATH, '0034-8910-rsp-48-2-0206.xml')
et = etree.parse(sample)
_, err_list = checks.funding_group((et, []))
self.assertEqual(len(err_list), 0)
def test_proposition_1_case_1(self):
"""
HasExplicitContract is True
HasFundingGroup is True
(HasExplicitContract <=> HasFundingGroup) is True
"""
sample = os.path.join(SAMPLES_PATH, '0034-8910-rsp-48-2-0206.xml')
et = etree.parse(sample)
_, err_list = checks.funding_group((et, []))
self.assertEquals(len(err_list), 0)
def test_fn_p_with_no_content(self):
sample = io.BytesIO(b"""
<article>
<front>
<article-meta>
</article-meta>
</front>
<back>
<fn-group>
<fn id="fn1" fn-type="financial-disclosure">
<p/>
</fn>
</fn-group>
</back>
</article>
""")
et = etree.parse(sample)
_, err_list = checks.funding_group((et, []))
self.assertEqual(len(err_list), 1)
self.assertTrue("'fn-group'" in err_list[0].message)
def test_proposition_3_case_3(self):
"""
∀ContractNo<fn> [ Registered(FundingGroup, ContractNo) ] ^
∀ContractNo<ack> [ Registered(FundingGroup, ContractNo) ] ^
∃ContractNo<funding-group> [ ¬(Registered(Ack, ContractNo)) ^ ¬(Registered(Fn, ContractNo)) ]
"""
sample = io.BytesIO(b"""
<article>
<front>
<article-meta>
<funding-group>
<award-group>
<funding-source>Brazilian Ministry of Health/Secretariat of Health Surveillance/Department of STD, AIDS and Viral Hepatitis</funding-source>
<award-id>234/07</award-id>
</award-group>
<award-group>
<funding-source>Brazilian Ministry of Health/Secretariat of Health Surveillance/Department of STD, AIDS and Viral Hepatitis</funding-source>
<award-id>236/08</award-id>
</award-group>
<funding-statement>This study was supported by the Brazilian Ministry of Health/Secretariat of Health Surveillance/Department of STD, AIDS and Viral Hepatitis, through the Project of International Technical Cooperation AD/BRA/03/H34 between the Brazilian Government and the United Nations Office on Drugs and Crime (Process CSV 234/07).</funding-statement>
</funding-group>
</article-meta>
</front>
<back>
<fn-group>
<fn id="fn1" fn-type="financial-disclosure">
<p>This study was supported by the Brazilian Ministry of Health/Secretariat of Health Surveillance/Department of STD, AIDS and Viral Hepatitis, through the Project of International Technical Cooperation AD/BRA/03/H34 between the Brazilian Government and the United Nations Office on Drugs and Crime (Process CSV 234/07).</p>
</fn>
</fn-group>
</back>
</article>
""")
et = etree.parse(sample)
_, err_list = checks.funding_group((et, []))
self.assertEqual(len(err_list), 1)
self.assertTrue("'funding-group'" in err_list[0].message)
def test_proposition_3_case_3(self):
"""
∀ContractNo<fn> [ Registered(FundingGroup, ContractNo) ] ^
∀ContractNo<ack> [ Registered(FundingGroup, ContractNo) ] ^
∃ContractNo<funding-group> [ ¬(Registered(Ack, ContractNo)) ^ ¬(Registered(Fn, ContractNo)) ]
"""
sample = StringIO("""
<article>
<front>
<article-meta>
<funding-group>
<award-group>
<funding-source>Brazilian Ministry of Health/Secretariat of Health Surveillance/Department of STD, AIDS and Viral Hepatitis</funding-source>
<award-id>234/07</award-id>
</award-group>
<award-group>
<funding-source>Brazilian Ministry of Health/Secretariat of Health Surveillance/Department of STD, AIDS and Viral Hepatitis</funding-source>
<award-id>236/08</award-id>
</award-group>
<funding-statement>This study was supported by the Brazilian Ministry of Health/Secretariat of Health Surveillance/Department of STD, AIDS and Viral Hepatitis, through the Project of International Technical Cooperation AD/BRA/03/H34 between the Brazilian Government and the United Nations Office on Drugs and Crime (Process CSV 234/07).</funding-statement>
</funding-group>
</article-meta>
</front>
<back>
<fn-group>
<fn id="fn1" fn-type="financial-disclosure">
<p>This study was supported by the Brazilian Ministry of Health/Secretariat of Health Surveillance/Department of STD, AIDS and Viral Hepatitis, through the Project of International Technical Cooperation AD/BRA/03/H34 between the Brazilian Government and the United Nations Office on Drugs and Crime (Process CSV 234/07).</p>
</fn>
</fn-group>
</back>
</article>
""")
et = etree.parse(sample)
_, err_list = checks.funding_group((et, []))
self.assertEquals(len(err_list), 1)
self.assertTrue("'funding-group'" in err_list[0].message)
def test_proposition_3_case_2(self):
""" This cannot be checked by packtools' stylechecker.
∀ContractNo<fn> [ Registered(FundingGroup, ContractNo) ] ^
∃ContractNo<ack> [ ¬Registered(FundingGroup, ContractNo) ] ^
∀ContractNo<funding-group> [ Registered(Ack, ContractNo) v Registered(Fn, ContractNo) ]
"""
sample = io.BytesIO(b"""
<article>
<front>
<article-meta>
<funding-group>
<award-group>
<funding-source>Brazilian Ministry of Health/Secretariat of Health Surveillance/Department of STD, AIDS and Viral Hepatitis</funding-source>
<award-id>234/07</award-id>
</award-group>
<funding-statement>This study was supported by the Brazilian Ministry of Health/Secretariat of Health Surveillance/Department of STD, AIDS and Viral Hepatitis, through the Project of International Technical Cooperation AD/BRA/03/H34 between the Brazilian Government and the United Nations Office on Drugs and Crime (Process CSV 234/07).</funding-statement>
</funding-group>
</article-meta>
</front>
<back>
<fn-group>
<fn id="fn1" fn-type="financial-disclosure">
<p>This study was supported by the Brazilian Ministry of Health/Secretariat of Health Surveillance/Department of STD, AIDS and Viral Hepatitis, through the Project of International Technical Cooperation AD/BRA/03/H34 between the Brazilian Government and the United Nations Office on Drugs and Crime (Process CSV 234/07).</p>
</fn>
</fn-group>
<ack>
<p>... this study was supported by FooBar under the process 235/09.</p>
</ack>
</back>
</article>
""")
et = etree.parse(sample)
_, err_list = checks.funding_group((et, []))
self.assertEqual(len(err_list), 0) # the error could not be detected