def scatter_pairwise(series1, series2, x_label, y_label) -> str:
"""Scatter plot (or hexbin plot) from two series
Examples:
>>> widths = pd.Series([800, 1024])
>>> heights = pd.Series([600, 768])
>>> scatter_series(widths, heights, "Width", "Height")
Args:
series1: the series corresponding to the x-axis
series2: the series corresponding to the y-axis
x_label: the label on the x-axis
y_label: the label on the y-axis
Returns:
A string containing (a reference to) the image
"""
plt.xlabel(x_label)
plt.ylabel(y_label)
color = config["html"]["style"]["primary_color"].get(str)
scatter_threshold = config["plot"]["scatter_threshold"].get(int)
if len(series1) > scatter_threshold:
cmap = sns.light_palette(color, as_cmap=True)
plt.hexbin(series1.tolist(), series2.tolist(), gridsize=15, cmap=cmap)
else:
plt.scatter(series1.tolist(), series2.tolist(), color=color)
return plot_360_n0sc0pe(plt)
def scatter_series(config: Settings,
series: pd.Series,
x_label: str = "Width",
y_label: str = "Height") -> str:
"""Scatter plot (or hexbin plot) from one series of sequences with length 2
Examples:
>>> scatter_series(file_sizes, "Width", "Height")
Args:
config: report Settings object
series: the Series
x_label: the label on the x-axis
y_label: the label on the y-axis
Returns:
A string containing (a reference to) the image
"""
plt.xlabel(x_label)
plt.ylabel(y_label)
color = config.html.style.primary_color
data = zip(*series.tolist())
if len(series) > config.plot.scatter_threshold:
cmap = sns.light_palette(color, as_cmap=True)
plt.hexbin(*data, cmap=cmap)
else:
plt.scatter(*data, color=color)
return plot_360_n0sc0pe(config)
def scatter_pairwise(config: Settings, series1: pd.Series, series2: pd.Series,
x_label: str, y_label: str) -> str:
"""Scatter plot (or hexbin plot) from two series
Examples:
>>> widths = pd.Series([800, 1024])
>>> heights = pd.Series([600, 768])
>>> scatter_series(widths, heights, "Width", "Height")
Args:
config: Settings
series1: the series corresponding to the x-axis
series2: the series corresponding to the y-axis
x_label: the label on the x-axis
y_label: the label on the y-axis
Returns:
A string containing (a reference to) the image
"""
plt.xlabel(x_label)
plt.ylabel(y_label)
color = config.html.style.primary_color
indices = (series1.notna()) & (series2.notna())
if len(series1) > config.plot.scatter_threshold:
cmap = sns.light_palette(color, as_cmap=True)
plt.hexbin(series1[indices], series2[indices], gridsize=15, cmap=cmap)
else:
plt.scatter(series1[indices], series2[indices], color=color)
return plot_360_n0sc0pe(config)
def scatter_series(series, x_label="Width", y_label="Height") -> str:
"""Scatter plot (or hexbin plot) from one series of sequences with length 2
Examples:
>>> scatter_series(file_sizes, "Width", "Height")
Args:
series: the Series
x_label: the label on the x-axis
y_label: the label on the y-axis
Returns:
A string containing (a reference to) the image
"""
plt.xlabel(x_label)
plt.ylabel(y_label)
color = config["html"]["style"]["primary_color"].get(str)
scatter_threshold = config["plot"]["scatter_threshold"].get(int)
if len(series) > scatter_threshold:
cmap = sns.light_palette(color, as_cmap=True)
plt.hexbin(*zip(*series.tolist()), cmap=cmap)
else:
plt.scatter(*zip(*series.tolist()), color=color)
return plot_360_n0sc0pe(plt)
def scatter_complex(series: pd.Series) -> str:
"""Scatter plot (or hexbin plot) from a series of complex values
Examples:
>>> complex_series = pd.Series([complex(1, 3), complex(3, 1)])
>>> scatter_complex(complex_series)
Args:
series: the Series
Returns:
A string containing (a reference to) the image
"""
plt.ylabel("Imaginary")
plt.xlabel("Real")
color = config["html"]["style"]["primary_color"].get(str)
scatter_threshold = config["plot"]["scatter_threshold"].get(int)
if len(series) > scatter_threshold:
cmap = sns.light_palette(color, as_cmap=True)
plt.hexbin(series.real, series.imag, cmap=cmap)
else:
plt.scatter(series.real, series.imag, color=color)
return plot_360_n0sc0pe(plt)
def scatter_series(series, x_label="Width", y_label="Height") -> str:
"""
Examples:
>>> scatter_series(file_sizes, "Width", "Height")
Args:
series:
x_label:
y_label:
Returns:
"""
plt.xlabel(x_label)
plt.ylabel(y_label)
color = config["html"]["style"]["primary_color"].get(str)
if len(series) > 1000:
cmap = sns.light_palette(color, as_cmap=True)
plt.hexbin(*zip(*series.tolist()), cmap=cmap)
else:
plt.scatter(*zip(*series.tolist()), color=color)
return plot_360_n0sc0pe(plt)
def correlation_matrix(data: pd.DataFrame, vmin: int = -1) -> str:
"""Plot image of a matrix correlation.
Args:
data: The matrix correlation to plot.
vmin: Minimum value of value range.
Returns:
The resulting correlation matrix encoded as a string.
"""
fig_cor, axes_cor = plt.subplots()
cmap = config["plot"]["correlation"]["cmap"].get(str)
if vmin == 0:
cmap = get_cmap_half(cmap)
labels = data.columns
matrix_image = axes_cor.imshow(
data, vmin=vmin, vmax=1, interpolation="nearest", cmap=cmap
)
plt.colorbar(matrix_image)
axes_cor.set_xticks(np.arange(0, data.shape[0], float(data.shape[0]) / len(labels)))
axes_cor.set_yticks(np.arange(0, data.shape[1], float(data.shape[1]) / len(labels)))
font_size = get_correlation_font_size(len(labels))
axes_cor.set_xticklabels(labels, rotation=90, fontsize=font_size)
axes_cor.set_yticklabels(labels, fontsize=font_size)
plt.subplots_adjust(bottom=0.2)
return plot_360_n0sc0pe(plt)
def mini_histogram(
config: Settings,
series: np.ndarray,
bins: Union[int, np.ndarray],
date: bool = False,
) -> str:
"""Plot a small (mini) histogram of the data.
Args:
config: Settings
series: The data to plot.
bins: number of bins (int for equal size, ndarray for variable size)
Returns:
The resulting mini histogram encoded as a string.
"""
plot = _plot_histogram(config, series, bins, figsize=(3, 2.25), date=date)
plot.axes.get_yaxis().set_visible(False)
plot.set_facecolor("w")
for tick in plot.xaxis.get_major_ticks():
tick.label1.set_fontsize(6 if date else 8)
plot.xaxis.set_tick_params(rotation=90 if date else 45)
plot.figure.tight_layout()
return plot_360_n0sc0pe(config)
def scatter_complex(series) -> str:
plt.ylabel("Imaginary")
plt.xlabel("Real")
if len(series) > 1000:
plt.hexbin(series.real, series.imag)
else:
plt.scatter(series.real, series.imag)
return plot_360_n0sc0pe(plt)
def correlation_matrix(data: pd.DataFrame, vmin: int = -1) -> str:
"""Plot image of a matrix correlation.
Args:
data: The matrix correlation to plot.
vmin: Minimum value of value range.
Returns:
The resulting correlation matrix encoded as a string.
"""
with matplotlib.style.context([
"seaborn-ticks",
str(get_resource("styles/pandas_profiling_frame.mplstyle"))
]):
fig_cor, axes_cor = plt.subplots()
cmap_name = config["plot"]["correlation"]["cmap"].get(str)
cmap_bad = config["plot"]["correlation"]["bad"].get(str)
cmap = plt.get_cmap(cmap_name)
if vmin == 0:
cmap = get_cmap_half(cmap)
cmap.set_bad(cmap_bad)
labels = data.columns
matrix_image = axes_cor.imshow(data,
vmin=vmin,
vmax=1,
interpolation="nearest",
cmap=cmap)
cbar = plt.colorbar(matrix_image)
cbar.outline.set_visible(False)
if data.isnull().values.any():
legend_elements = [
Patch(facecolor=cmap(np.nan), label="invalid\ncoefficient")
]
plt.legend(
handles=legend_elements,
loc="upper right",
handleheight=2.5,
)
axes_cor.set_xticks(
np.arange(0, data.shape[0],
float(data.shape[0]) / len(labels)))
axes_cor.set_yticks(
np.arange(0, data.shape[1],
float(data.shape[1]) / len(labels)))
font_size = get_correlation_font_size(len(labels))
axes_cor.set_xticklabels(labels, rotation=90, fontsize=font_size)
axes_cor.set_yticklabels(labels, fontsize=font_size)
plt.subplots_adjust(bottom=0.2)
return plot_360_n0sc0pe(plt)
def scatter_pairwise(series1, series2, x_label, y_label) -> str:
plt.xlabel(x_label)
plt.ylabel(y_label)
if len(series1) > 1000:
color = config["html"]["style"]["primary_color"].get(str)
cmap = sns.light_palette(color, as_cmap=True)
plt.hexbin(series1.tolist(), series2.tolist(), gridsize=15, cmap=cmap)
else:
plt.scatter(series1.tolist(), series2.tolist())
return plot_360_n0sc0pe(plt)
def correlation_matrix(config: Settings,
data: pd.DataFrame,
vmin: int = -1) -> str:
"""Plot image of a matrix correlation.
Args:
config: Settings
data: The matrix correlation to plot.
vmin: Minimum value of value range.
Returns:
The resulting correlation matrix encoded as a string.
"""
fig_cor, axes_cor = plt.subplots()
cmap = plt.get_cmap(config.plot.correlation.cmap)
if vmin == 0:
cmap = get_cmap_half(cmap)
cmap = copy.copy(cmap)
cmap.set_bad(config.plot.correlation.bad)
labels = data.columns
matrix_image = axes_cor.imshow(data,
vmin=vmin,
vmax=1,
interpolation="nearest",
cmap=cmap)
plt.colorbar(matrix_image)
if data.isnull().values.any():
legend_elements = [
Patch(facecolor=cmap(np.nan), label="invalid\ncoefficient")
]
plt.legend(
handles=legend_elements,
loc="upper right",
handleheight=2.5,
)
axes_cor.set_xticks(
np.arange(0, data.shape[0],
float(data.shape[0]) / len(labels)))
axes_cor.set_yticks(
np.arange(0, data.shape[1],
float(data.shape[1]) / len(labels)))
font_size = get_correlation_font_size(len(labels))
axes_cor.set_xticklabels(labels, rotation=90, fontsize=font_size)
axes_cor.set_yticklabels(labels, fontsize=font_size)
plt.subplots_adjust(bottom=0.2)
return plot_360_n0sc0pe(config)
def cat_frequency_plot(
config: Settings,
data: pd.Series,
) -> str:
"""Generate category frequency plot to show category frequency.
Works for boolean and categorical features.
Modify colors by setting 'config.plot.cat_freq.colors' to a
list of valid matplotib colors:
https://matplotlib.org/stable/tutorials/colors/colors.html
Args:
config (Settings): a profile report config
data (pd.Series): category frequencies with category names as index
Returns:
str: encoded category frequency plot encoded
"""
# Get colors, if not defined, use matplotlib defaults
colors = config.plot.cat_freq.colors
if colors is None:
# Get matplotlib defaults
colors = plt.rcParams["axes.prop_cycle"].by_key()["color"]
# If there are more categories than colors, loop through the colors again
if len(colors) < len(data):
multiplier = int(len(data) / len(colors)) + 1
colors = multiplier * colors # repeat colors as required
colors = colors[0:len(
data)] # select the exact number of colors required
# Create the plot
plot_type = config.plot.cat_freq.type
if plot_type == "bar":
plot, legend = _plot_stacked_barh(data, colors)
elif plot_type == "pie":
plot, legend = _plot_pie_chart(data, colors)
else:
msg = (f"'{plot_type}' is not a valid plot type! "
"Expected values are ['bar', 'pie']")
msg
raise ValueError(msg)
return plot_360_n0sc0pe(
config,
bbox_extra_artists=[
legend,
],
bbox_inches="tight",
)
def scatter_complex(series) -> str:
plt.ylabel("Imaginary")
plt.xlabel("Real")
color = config["html"]["style"]["primary_color"].get(str)
if len(series) > 1000:
cmap = sns.light_palette(color, as_cmap=True)
plt.hexbin(series.real, series.imag, cmap=cmap)
else:
plt.scatter(series.real, series.imag, color=color)
return plot_360_n0sc0pe(plt)
def missing_dendrogram(data: pd.DataFrame) -> str:
"""Generate a dendrogram plot for missing values.
Args:
data: Pandas DataFrame to generate missing values dendrogram plot from.
Returns:
The resulting missing values dendrogram plot encoded as a string.
"""
missingno.dendrogram(data, fontsize=get_font_size(data) * 2.0)
plt.subplots_adjust(left=0.1, right=0.9, top=0.7, bottom=0.2)
return plot_360_n0sc0pe(plt)
def pie_plot(data, legend_kws=None):
if legend_kws is None:
legend_kws = {}
def func(pct, allvals):
absolute = int(pct / 100.0 * np.sum(allvals))
return f"{pct:.1f}%\n({absolute:d})"
wedges, _, _ = plt.pie(
data, autopct=lambda pct: func(pct, data), textprops={"color": "w"}
)
plt.legend(wedges, data.index.values, **legend_kws)
return plot_360_n0sc0pe(plt)
def pie_plot(data, legend_kws=None):
if legend_kws is None:
legend_kws = {}
def func(pct, allvals):
absolute = int(pct / 100.0 * np.sum(allvals))
return "{:.1f}%\n({:d})".format(pct, absolute)
wedges, _, _ = plt.pie(data,
autopct=lambda pct: func(pct, data),
textprops=dict(color="w"))
plt.legend(wedges, data.index.values, **legend_kws)
return plot_360_n0sc0pe(plt)
def histogram(series: np.ndarray, bins: Union[int, np.ndarray], date=False) -> str:
"""Plot an histogram of the data.
Args:
series: The data to plot.
bins: number of bins (int for equal size, ndarray for variable size)
Returns:
The resulting histogram encoded as a string.
"""
plot = _plot_histogram(series, bins, date=date)
plot.xaxis.set_tick_params(rotation=90 if date else 45)
plot.figure.tight_layout()
return plot_360_n0sc0pe(plt)
def predictivity(data: pd.DataFrame) -> str:
"""Plot image of a matrix correlation.
Args:
data: The matrix correlation to plot.
Returns:
The resulting predictivity plot encoded as a string.
"""
with matplotlib.style.context([
"seaborn-ticks",
str(get_resource("styles/pandas_profiling_frame.mplstyle"))
]):
target_variables = config["correlations"]["targets"].get()
if len(target_variables) == 0:
target_variables = list(
data.select_dtypes(include=np.number).columns)
palette = sns.color_palette().as_hex()
tmp = palette[3]
palette[3] = palette[1]
palette[1] = tmp
fig_pred, axes_pred = plt.subplots()
axes_pred.set_ylim(0, 100)
# Rescale in range [0, 100] for better visualization
predictivity = (100 *
data[target_variables].round(2).abs()).astype(int)
# Barplot predictivity
predictivity.plot.bar(
figsize=(10, 6),
width=0.8,
legend=True,
fontsize=get_predictivity_font_size(predictivity),
rot=45,
ax=axes_pred,
color=palette)
for patch in axes_pred.patches:
axes_pred.annotate(patch.get_height(),
(patch.get_x() + patch.get_width() / 2., 100),
ha="center",
va="center",
xytext=(0, 15),
textcoords="offset points",
rotation=45)
plt.subplots_adjust(left=0.1, right=0.9, top=0.8, bottom=0.2)
return plot_360_n0sc0pe(plt)
def histogram(series: np.ndarray, series_description: dict,
bins: Union[int, np.ndarray]) -> str:
"""Plot an histogram of the data.
Args:
series: The data to plot.
series_description:
bins: number of bins (int for equal size, ndarray for variable size)
Returns:
The resulting histogram encoded as a string.
"""
plot = _plot_histogram(series, series_description, bins)
plot.xaxis.set_tick_params(rotation=45)
plot.figure.tight_layout()
return plot_360_n0sc0pe(plt)
def missing_dendrogram(data: pd.DataFrame) -> str:
"""Generate a dendrogram plot for missing values.
Args:
data: Pandas DataFrame to generate missing values dendrogram plot from.
Returns:
The resulting missing values dendrogram plot encoded as a string.
"""
with matplotlib.style.context([
"seaborn-ticks",
str(get_resource("styles/pandas_profiling_frame.mplstyle"))
]):
missingno.dendrogram(data, fontsize=get_font_size(data) * 2.0)
plt.subplots_adjust(left=0.1, right=0.9, top=0.7, bottom=0.2)
return plot_360_n0sc0pe(plt)
def clustermap(data: pd.DataFrame) -> str:
"""Plot a clustermap of the data.
Args:
series: The data to plot.
Returns:
The resulting clustermap encoded as a string.
:param data:
"""
with matplotlib.style.context([
"seaborn-ticks",
str(get_resource("styles/pandas_profiling_frame.mplstyle"))
]):
plot = _plot_clustermap(data)
return plot_360_n0sc0pe(plt)
def boxplot(series: np.ndarray, series_description: dict) -> str:
"""Plot a boxplot of the data.
Args:
series: The data to plot.
series_description:
Returns:
The resulting boxplot encoded as a string.
"""
with matplotlib.style.context([
"seaborn-ticks",
str(get_resource("styles/pandas_profiling_frame.mplstyle"))
]):
plot = _plot_boxplot(series, series_description)
plot.figure.tight_layout()
return plot_360_n0sc0pe(plt)
def missing_matrix(data: pd.DataFrame) -> str:
"""Generate missing values matrix plot
Args:
data: Pandas DataFrame to generate missing values matrix from.
Returns:
The resulting missing values matrix encoded as a string.
"""
labels = config["plot"]["missing"]["force_labels"].get(bool)
missingno.matrix(
data,
figsize=(10, 4),
color=hex_to_rgb(config["html"]["style"]["primary_color"].get(str)),
fontsize=get_font_size(data) / 20 * 16,
sparkline=False,
labels=labels,
)
plt.subplots_adjust(left=0.1, right=0.9, top=0.7, bottom=0.2)
return plot_360_n0sc0pe(plt)
def pie_plot(config: Settings,
data: pd.Series,
legend_kws: Optional[dict] = None) -> str:
if legend_kws is None:
legend_kws = {}
def make_autopct(values: pd.Series) -> Callable:
def my_autopct(pct: float) -> str:
total = np.sum(values)
val = int(round(pct * total / 100.0))
return f"{pct:.1f}% ({val:d})"
return my_autopct
wedges, _, _ = plt.pie(data,
autopct=make_autopct(data),
textprops={"color": "w"})
plt.legend(wedges, data.index.values, **legend_kws)
return plot_360_n0sc0pe(config)
def histogram(series: np.ndarray, series_description: dict,
bins: Union[int, np.ndarray]) -> str:
"""Plot an histogram of the data.
Args:
series: The data to plot.
series_description:
bins: number of bins (int for equal size, ndarray for variable size)
Returns:
The resulting histogram encoded as a string.
"""
with matplotlib.style.context([
"seaborn-ticks",
str(get_resource("styles/pandas_profiling_frame.mplstyle"))
]):
plot = _plot_histogram(series, series_description, bins)
plot.xaxis.set_tick_params(rotation=45)
plot.figure.tight_layout()
return plot_360_n0sc0pe(plt)
def missing_matrix(config: Settings, data: pd.DataFrame) -> str:
"""Generate missing values matrix plot
Args:
config: Settings
data: Pandas DataFrame to generate missing values matrix from.
Returns:
The resulting missing values matrix encoded as a string.
"""
missingno.matrix(
data,
figsize=(10, 4),
fontsize=get_font_size(data) / 20 * 16,
sparkline=False,
color=hex_to_rgb(config.html.style.primary_color),
labels=config.plot.missing.force_labels,
)
plt.subplots_adjust(left=0.1, right=0.9, top=0.7, bottom=0.2)
return plot_360_n0sc0pe(config)
def missing_bar(data: pd.DataFrame) -> str:
"""Generate missing values bar plot.
Args:
data: Pandas DataFrame to generate missing values bar plot from.
Returns:
The resulting missing values bar plot encoded as a string.
"""
labels = config["plot"]["missing"]["force_labels"].get(bool)
missingno.bar(
data,
figsize=(10, 5),
color=hex_to_rgb(config["html"]["style"]["primary_color"].get(str)),
fontsize=get_font_size(data),
labels=labels,
)
for ax0 in plt.gcf().get_axes():
ax0.grid(False)
plt.subplots_adjust(left=0.1, right=0.9, top=0.8, bottom=0.3)
return plot_360_n0sc0pe(plt)
def scatter_series(series, x_label="Width", y_label="Height") -> str:
"""
Examples:
>>> scatter_series(file_sizes, "Width", "Height")
Args:
series:
x_label:
y_label:
Returns:
"""
plt.xlabel(x_label)
plt.ylabel(y_label)
if len(series) > 1000:
plt.hexbin(*zip(*series.tolist()))
else:
plt.scatter(*zip(*series.tolist()))
return plot_360_n0sc0pe(plt)
def missing_bar(config: Settings, data: pd.DataFrame) -> str:
"""Generate missing values bar plot.
Args:
config: Settings
data: Pandas DataFrame to generate missing values bar plot from.
Returns:
The resulting missing values bar plot encoded as a string.
"""
missingno.bar(
data,
figsize=(10, 5),
fontsize=get_font_size(data),
color=hex_to_rgb(config.html.style.primary_color),
labels=config.plot.missing.force_labels,
)
for ax0 in plt.gcf().get_axes():
ax0.grid(False)
plt.subplots_adjust(left=0.1, right=0.9, top=0.8, bottom=0.3)
return plot_360_n0sc0pe(config)
