def __http_score__update__(self, subjects_to_update=None):
"""
after we have updated the scores, return them to panoptes using the http api
the alternative might be to upload to s3 or email someone the results
:param subjects_to_update: if there are a certain select number of subjects you want to update
so specifically, you used a heuristic to select which subjects to update and only want to send
those back. Basically if you selected heuristic for update and after sending everything back, that is
kinda silly - hence the assert
:return:
"""
assert (self.update_type == "complete") or (subjects_to_update
is not None)
for subject_id, aggregation in self.aggregator.__list_aggregations__(
subjects_to_update):
# try creating the aggregation
status, explanation = panoptesPythonAPI.create_aggregation(
self.workflow_id, subject_id, self.token, aggregation)
# if we had a problem, try updating the aggregation
if status == 400:
aggregation_id, etag = panoptesPythonAPI.find_aggregation_etag(
self.workflow_id, subject_id, self.token)
panoptesPythonAPI.update_aggregation(
self.workflow_id, self.workflow_version, subject_id,
aggregation_id, self.token, aggregation, etag)
def aggregate(scores):
# now do the aggregation
for (workflow_id,subject_id),values in scores.items():
# calculate the average score, std and set up the JSON results
avg_score = (values[0]*-1+ + values[1]*1 + values[2]*3)/float(sum(values))
std = math.sqrt((-1-avg_score)**2*(values[0]/float(sum(values))) + (1-avg_score)**2*(values[1]/float(sum(values))) + (3-avg_score)**2*(values[1]/float(sum(values))))
aggregation = {"mean":avg_score,"std":std,"count":values}
# try creating the aggregation
status,explanation = panoptesPythonAPI.create_aggregation(workflow_id,subject_id,token,aggregation)
# if we had a problem, try updating the aggregation
if status == 400:
aggregation_id,etag = panoptesPythonAPI.find_aggregation_etag(workflow_id,subject_id,token)
panoptesPythonAPI.update_aggregation(workflow_id,workflow_version,subject_id,aggregation_id,token,aggregation,etag)
def __http_score__update__(self,subjects_to_update=None):
"""
after we have updated the scores, return them to panoptes using the http api
the alternative might be to upload to s3 or email someone the results
:param subjects_to_update: if there are a certain select number of subjects you want to update
so specifically, you used a heuristic to select which subjects to update and only want to send
those back. Basically if you selected heuristic for update and after sending everything back, that is
kinda silly - hence the assert
:return:
"""
assert (self.update_type == "complete") or (subjects_to_update is not None)
for subject_id,aggregation in self.aggregator.__list_aggregations__(subjects_to_update):
# try creating the aggregation
status,explanation = panoptesPythonAPI.create_aggregation(self.workflow_id,subject_id,self.token,aggregation)
# if we had a problem, try updating the aggregation
if status == 400:
aggregation_id,etag = panoptesPythonAPI.find_aggregation_etag(self.workflow_id,subject_id,self.token)
panoptesPythonAPI.update_aggregation(self.workflow_id,self.workflow_version,subject_id,aggregation_id,self.token,aggregation,etag)
