def __init__(self, gid = -1, pos = -1, p={}):
# Get default L2Pyr params and update them with any corresponding params in p
p_all_default = p_default.get_L2Pyr_params_default()
self.p_all = paramrw.compare_dictionaries(p_all_default, p)
# Get somatic, dendritic, and synapse properties
p_soma = self.__get_soma_props(pos)
p_dend = self.__get_dend_props()
p_syn = self.__get_syn_props()
# p_dend_props, dend_names = self.__get_dend_props()
# usage: Pyr.__init__(self, soma_props)
Pyr.__init__(self, gid, p_soma)
self.celltype = 'L2_pyramidal'
# geometry
# creates dict of dends: self.dends
self.create_dends(p_dend)
self.topol() # sets the connectivity between sections
self.geom(p_dend) # sets geom properties; adjusted after translation from hoc (2009 model)
# biophysics
self.__biophys_soma()
self.__biophys_dends()
# dipole_insert() comes from Cell()
self.yscale = self.get_sectnames()
self.dipole_insert(self.yscale)
# create synapses
self.__synapse_create(p_syn)
# self.__synapse_create()
# run record_current_soma(), defined in Cell()
self.record_current_soma()
def __init__(self, gid=-1, pos=-1, p={}):
# Get default L5Pyr params and update them with corresponding params in p
p_all_default = p_default.get_L5Pyr_params_default()
self.p_all = paramrw.compare_dictionaries(p_all_default, p)
# Get somatic, dendirtic, and synapse properties
p_soma = self.__get_soma_props(pos)
p_dend = self.__get_dend_props()
p_syn = self.__get_syn_props()
Pyr.__init__(self, gid, p_soma)
self.celltype = 'L5_pyramidal'
# Geometry
# dend Cm and dend Ra set using soma Cm and soma Ra
self.create_dends(p_dend) # just creates the sections
self.topol() # sets the connectivity between sections
self.geom(
p_dend
) # sets geom properties; adjusted after translation from hoc (2009 model)
# biophysics
self.__biophys_soma()
self.__biophys_dends()
# Dictionary of length scales to calculate dipole without 3d shape. Comes from Pyr().
# dipole_insert() comes from Cell()
self.yscale = self.get_sectnames()
self.dipole_insert(self.yscale)
# create synapses
self.__synapse_create(p_syn)
# self.create_ca_rxd()
# insert iclamp
self.list_IClamp = []
# run record current soma, defined in Cell()
self.record_current_soma()