def setUp(self):
kitchen_sink_xml = os.path.join(os.getcwd(), 'sample-xml/elife-kitchen-sink.xml')
# all of these methods are equivalent:
#self.soup = bss(open(kitchen_sink_xml, 'r').read())
#self.soup = parser.parse_xml(open(kitchen_sink_xml, 'r'))
self.soup = parser.parse_document(kitchen_sink_xml)
def setUp(self):
kitchen_sink_xml = sample_xml('elife-kitchen-sink.xml')
# all of these methods are equivalent:
#self.soup = bss(open(kitchen_sink_xml, 'r').read())
#self.soup = parser.parse_xml(open(kitchen_sink_xml, 'r'))
self.soup = parser.parse_document(kitchen_sink_xml)
def test_quickly(self):
struct = [
(parser.doi, u"10.7554/eLife.00013"),
(parser.journal_id, u"eLife"),
(parser.journal_title, u"eLife"),
#(parser.journal_issn, u"2050-084X"),
(parser.publisher, u"eLife Sciences Publications, Ltd"),
]
for func, expected in struct:
soup = parser.parse_document(self.kitchen_sink_xml)
got = func(soup)
try:
self.assertEqual(got, expected)
except AssertionError:
print 'failed on',func,'expected',expected,'got',got
raise
soup = parser.parse_document(self.kitchen_sink_xml)
self.assertEqual(parser.journal_issn(soup, pub_format="electronic"), u"2050-084X")
def test_quickly(self):
struct = [
(parser.doi, u"10.7554/eLife.00013"),
(parser.journal_id, u"eLife"),
(parser.journal_title, u"eLife"),
#(parser.journal_issn, u"2050-084X"),
(parser.publisher, u"eLife Sciences Publications, Ltd"),
]
for func, expected in struct:
soup = parser.parse_document(self.kitchen_sink_xml)
got = func(soup)
try:
self.assertEqual(got, expected)
except AssertionError:
print 'failed on', func, 'expected', expected, 'got', got
raise
soup = parser.parse_document(self.kitchen_sink_xml)
self.assertEqual(parser.journal_issn(soup, pub_format="electronic"),
u"2050-084X")
def test_decision_letter(self, filename, expected_type):
soup = parser.parse_document(sample_xml(filename))
self.assertEqual(type(raw_parser.decision_letter(soup)), expected_type)
def test_author_response(self, filename, expected_type):
soup = parser.parse_document(sample_xml(filename))
self.assertEqual(type(raw_parser.author_response(soup)), expected_type)
def test_article_body(self, filename, expected_type):
soup = parser.parse_document(sample_xml(filename))
self.assertEqual(type(raw_parser.article_body(soup)), expected_type)
def test_sub_article(self, filename, expected_len):
soup = parser.parse_document(sample_xml(filename))
self.assertEqual(len(raw_parser.sub_article(soup)), expected_len)
def test_quickly2(self):
soup = parser.parse_document(self.xml)
self.assertEqual(raw_parser.article_type(soup), "research-article")
def test_abstract(self, filename, expected_len):
soup = parser.parse_document(sample_xml(filename))
self.assertEqual(len(raw_parser.abstract(soup)), expected_len)
for filename in xml_filenames:
if not os.path.exists(json_expected_folder(filename)):
os.mkdir(json_expected_folder(filename))
# Output json files for testing expected output
for function_attrs in json_functions:
if type(function_attrs) == str:
function_name = function_attrs
function_arguments = None
elif type(function_attrs) == tuple:
function_name = function_attrs[0]
if type(function_attrs[1]) == tuple:
function_arguments = function_attrs[1]
else:
print "arguments for function " + function_name + " must be a tuple"
soup = parser.parse_document(sample_xml(filename))
if function_arguments:
result = getattr(parser, function_name)(soup, *function_arguments)
else:
result = getattr(parser, function_name)(soup)
if result is not None:
print "writing " + json_expected_file(filename, function_name)
with open(json_expected_file(filename, function_name), "wb") as json_file_fp:
json_file_fp.write(json.dumps(result, indent=4))
def test_mixed_citations(self):
self.soup = parser.parse_document(sample_xml('elife-kitchen-sink.xml'))
self.assertEqual(1, len(raw_parser.mixed_citations(self.soup)))
def test_funding_group(self, filename, expected_len):
soup = parser.parse_document(sample_xml(filename))
self.assertEqual(len(raw_parser.funding_group(soup)), expected_len)
def test_quickly2(self):
soup = parser.parse_document(self.xml)
self.assertEqual(raw_parser.article_type(soup), "research-article")
def test_fn_group(self, filename, content_type, expected_len):
soup = parser.parse_document(sample_xml(filename))
self.assertEqual(len(raw_parser.fn_group(soup, content_type)),
expected_len)
def test_pub_id_uri(self, filename, ext_link_type, expected_len):
soup = parser.parse_document(sample_xml(filename))
self.assertEqual(len(raw_parser.ext_link(soup, ext_link_type)),
expected_len)
def setUp(self):
self.kitchen_sink_xml = sample_xml('elife-kitchen-sink.xml')
self.xml = sample_xml('elife00013.xml')
self.soup = parser.parse_document(self.kitchen_sink_xml)
def test_disp_formula(self, filename, expected_len):
soup = parser.parse_document(sample_xml(filename))
self.assertEqual(len(raw_parser.disp_formula(soup)), expected_len)
def test_table_wrap_foot(self, filename, expected_len):
soup = parser.parse_document(sample_xml(filename))
self.assertEqual(len(raw_parser.table_wrap_foot(soup)), expected_len)
def setUp(self):
self.kitchen_sink_xml = os.path.join(os.getcwd(), 'sample-xml/elife-kitchen-sink.xml')
self.xml = os.path.join(os.getcwd(), 'sample-xml/elife00013.xml')
self.soup = parser.parse_document(self.kitchen_sink_xml)
def test_principal_award_recipient(self, filename, expected_len):
soup = parser.parse_document(sample_xml(filename))
self.assertEqual(len(raw_parser.principal_award_recipient(soup)),
expected_len)